From fd2071cfd725d8518c90669947715d4ae1039f13 Mon Sep 17 00:00:00 2001
From: Magnus Wahlberg <endast@gmail.com>
Date: Fri, 20 Oct 2023 09:51:53 +0200
Subject: [PATCH] Update README.md

add use conda
---
 deeprvat/annotations/README.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/deeprvat/annotations/README.md b/deeprvat/annotations/README.md
index f1578798..a19a270f 100644
--- a/deeprvat/annotations/README.md
+++ b/deeprvat/annotations/README.md
@@ -101,7 +101,7 @@ Data for VEP plugins and the CADD cache are stored in `annotation data`.
 After configuration and activating the `deeprvat_annotations` environment run the pipeline using snakemake:
 
 ```shell
-  snakemake -j <nr_cores> -s annotations.snakemake --configfile config/deeprvat_annotation.config 
+  snakemake -j <nr_cores> -s annotations.snakemake --configfile config/deeprvat_annotation.config --use-conda
 ```
 ## Running the annotation pipeline without the preprocessing pipeline