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Absplice named env #101

Merged
merged 6 commits into from
May 24, 2024
Merged

Absplice named env #101

merged 6 commits into from
May 24, 2024

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Marcel-Mueck
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What

This PR will change the Absplice environment to an automatically created env (by snakemake). This way, manually downloading the absplice repo and installing the environment will be rendered obsolete. Instead a yaml file is used for the environment and used in the pipeline. This will lead to an easier handling of the annotation pipeline as well as more robust results (as the absplice repo version is now pinned)

Testing

Clone the repo and run the annotation pipeline on some test data

@Marcel-Mueck Marcel-Mueck marked this pull request as ready for review May 24, 2024 13:06
@Marcel-Mueck Marcel-Mueck requested a review from endast May 24, 2024 13:06
@Marcel-Mueck Marcel-Mueck added the enhancement New feature or request label May 24, 2024
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@endast endast left a comment

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Looks good!

@endast endast merged commit f229146 into main May 24, 2024
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2 participants