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changed config to use normalized bcfs as default input. #105

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merged 1 commit into from
May 29, 2024

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Marcel-Mueck
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What

This PR changes the default values in the annotation config file to use the normalized bcf files from the preprocessing pipeline as an input.

Tests

a smoke test with the example data will be performed automatically by github, which should make sure that the paths all exist in the example data, the pipeline was tested locally with bcf files.

@Marcel-Mueck Marcel-Mueck requested a review from endast May 29, 2024 09:49
@Marcel-Mueck Marcel-Mueck marked this pull request as draft May 29, 2024 09:50
@Marcel-Mueck Marcel-Mueck marked this pull request as ready for review May 29, 2024 09:51
@Marcel-Mueck Marcel-Mueck added the documentation Improvements or additions to documentation label May 29, 2024
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LGTM!

@Marcel-Mueck Marcel-Mueck merged commit db48374 into main May 29, 2024
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@Marcel-Mueck Marcel-Mueck deleted the bcf-default-annotation-input branch May 29, 2024 11:33
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