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Update preprocessing.md #60

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Apr 4, 2024
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Update preprocessing.md #60

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4 changes: 2 additions & 2 deletions docs/preprocessing.md
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Expand Up @@ -11,7 +11,7 @@ The important files that this pipeline produces that are needed in DeepRVAT are:

- **preprocessed/genotypes.h5** *The main sparse hdf5 file*

- **norm/variants/variants.parquet** *List of variants i parquet format*
- **norm/variants/variants.parquet** *List of variants in parquet format*

## Setup environment

Expand Down Expand Up @@ -229,4 +229,4 @@ After configuration and activating the environment run the pipeline using snakem

```shell
snakemake -j<nr_cores> --configfile config/deeprvat_preprocess_config.yaml -s preprocess_no_qc.snakefile
```
```
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