Feature/annotation tests#82

Merged

Marcel-Mueck merged 26 commits intomainfrom feature/annotation-tests

May 13, 2024

+1,806-92

Commits on Apr 12, 2024

Commits on Apr 18, 2024

added annotation script to deeprvat setup, updated docs to reflect that change, added first test for annotation pipeline.
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Commits on Apr 25, 2024

added tests for annotation pipeline, variant file now parquet
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changed mock variant file to parquet
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changed expected files of test
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Commits on Apr 26, 2024

added concat annotations test
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added data for test
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added absplice git to absplice.yaml, let snakemake create env from yaml file
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added data for tests
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Commits on May 3, 2024

Test for merge_deeprsea_pcas function
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added test for absplice score aggregation
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Commits on May 7, 2024

added robustness for mixed entry types in ID column of input vcf, created test case
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Commits on May 8, 2024

added test for calculate_allele frequencies
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added further tests
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added pyranges to environment
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