v1.0.0-beta

Changelog

Major Changes

• Overhaul to kmerize.smk: Now proceeds through a bag-of-words and generator-based approach to reduce memory requirements. Affects snekmer cluster, snekmer model, and snekmer search.
• Overhaul to snekmer cluster: Clustering methods and distance matrix computation methods are updated. Now includes option to invoke BSF.
• Tutorial has been overhauled to reflect code changes

Minor Changes

• Documentation now exists via snekmer.readthedocs.io
• Updates/fixes to address the large memory requirements of snekmer cluster
• Installation instructions updated to account for various software ecosystems

Contributors

• Christine Chang (@christinehc)
• Jason McDermott (@biodataganache)
• Abby Jerger (@abbyjerger)