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log_network_4.txt
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log_network_4.txt
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:: Fetch protein network::
-- databases: [IntAct ToToRo]
-- ref-organism: #ppi_query.organism.Organism{:common-name Human, :taxon-id 9606, :scientific-name Homo sapiens}
-- proteins: [#ppi_query.protein.Protein{:organism #ppi_query.organism.Organism{:common-name Human, :taxon-id 9606, :scientific-name Homo sapiens}, :uniprotid Q08752}]
-- other-organisms: [#ppi_query.organism.Organism{:common-name nil, :taxon-id 6239, :scientific-name Caenorhabditis elegans} #ppi_query.organism.Organism{:common-name Mouse, :taxon-id 10090, :scientific-name Mus musculus} #ppi_query.organism.Organism{:common-name Fission yeast, :taxon-id 284812, :scientific-name Schizosaccharomyces pombe (strain 972 / ATCC 24843)} #ppi_query.organism.Organism{:common-name Mouse-ear cress, :taxon-id 3702, :scientific-name Arabidopsis thaliana} #ppi_query.organism.Organism{:common-name Bovine, :taxon-id 9913, :scientific-name Bos taurus} #ppi_query.organism.Organism{:common-name Fruit fly, :taxon-id 7227, :scientific-name Drosophila melanogaster} #ppi_query.organism.Organism{:common-name Baker's yeast, :taxon-id 559292, :scientific-name Saccharomyces cerevisiae (strain ATCC 204508 / S288c)} #ppi_query.organism.Organism{:common-name Rat, :taxon-id 10116, :scientific-name Rattus norvegicus}]
/!\ Warning: No Psicquic client found for database ToToRo
== orthologs-direct-interactions finished. Fetched :
=== Caenorhabditis elegans : 0 orthologs and 0 interactions found.
=== Mus musculus : 0 orthologs and 0 interactions found.
=== Schizosaccharomyces pombe (strain 972 / ATCC 24843) : 0 orthologs and 0 interactions found.
=== Arabidopsis thaliana : 0 orthologs and 0 interactions found.
=== Bos taurus : 0 orthologs and 0 interactions found.
=== Drosophila melanogaster : 0 orthologs and 0 interactions found.
=== Saccharomyces cerevisiae (strain ATCC 204508 / S288c) : 0 orthologs and 0 interactions found.
=== Rattus norvegicus : 0 orthologs and 0 interactions found.
== 15 direct interactions fetched
Caenorhabditis elegans : 0 secondary interactions found.
Mus musculus : 0 secondary interactions found.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) : 0 secondary interactions found.
Arabidopsis thaliana : 0 secondary interactions found.
Bos taurus : 0 secondary interactions found.
Drosophila melanogaster : 0 secondary interactions found.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) : 0 secondary interactions found.
Rattus norvegicus : 0 secondary interactions found.
== 0 orthologs secondary interactions in total
== Orthologs interactions brought back to reference organism.
== 10 proteins to display in total
== 23 secondary interactions in reference organism
== 14 interactions to display in total
#########################################
### END FETCH PROTEIN NETWORK ###
#########################################
nodes
[{"label":"O95433", "id":"O95433"}, {"label":"P19320", "id":"P19320"},
{"label":"Q8IXQ4", "id":"Q8IXQ4"}, {"label":"Q15185", "id":"Q15185"},
{"label":"Q16543", "id":"Q16543"}, {"label":"Q08752", "id":"Q08752"},
{"label":"P54257", "id":"P54257"}, {"label":"O95251", "id":"O95251"},
{"label":"P02751", "id":"P02751"}, {"label":"Q15051", "id":"Q15051"}]
edges
[{"from":"P02751",
"to":"Q15185",
"color":"red",
"label":"",
"desc":"Homo sapiens"},
{"from":"Q08752",
"to":"Q8IXQ4",
"color":"red",
"label":"",
"desc":"Homo sapiens"},
{"from":"Q16543",
"to":"O95433",
"color":"red",
"label":"",
"desc":"Homo sapiens"},
{"from":"P19320",
"to":"Q15185",
"color":"red",
"label":"",
"desc":"Homo sapiens"},
{"from":"P02751",
"to":"P02751",
"color":"red",
"label":"",
"desc":"Homo sapiens"},
{"from":"O95251",
"to":"Q08752",
"color":"red",
"label":"",
"desc":"Homo sapiens"},
{"from":"Q16543",
"to":"Q08752",
"color":"red",
"label":"",
"desc":"Homo sapiens"},
{"from":"O95433",
"to":"Q08752",
"color":"red",
"label":"",
"desc":"Homo sapiens"},
{"from":"P02751",
"to":"Q08752",
"color":"red",
"label":"",
"desc":"Homo sapiens"},
{"from":"Q15051",
"to":"Q08752",
"color":"red",
"label":"",
"desc":"Homo sapiens"},
{"from":"P19320",
"to":"P19320",
"color":"red",
"label":"",
"desc":"Homo sapiens"},
{"from":"P19320",
"to":"Q08752",
"color":"red",
"label":"",
"desc":"Homo sapiens"},
{"from":"P54257",
"to":"Q08752",
"color":"red",
"label":"",
"desc":"Homo sapiens"},
{"from":"Q08752",
"to":"Q15185",
"color":"red",
"label":"",
"desc":"Homo sapiens"}]
ppi-query.network-graph-test=>
[:proto-repl-code-execution-extension
"proto-repl-charts"
{:name "Psicquic interactions",
:type "graph",
:data {:nodes ({:label "O95433", :id "O95433"}
{:label "P19320", :id "P19320"}
{:label "Q8IXQ4", :id "Q8IXQ4"}
{:label "Q15185", :id "Q15185"}
{:label "Q16543", :id "Q16543"}
{:label "Q08752", :id "Q08752"}
{:label "P54257", :id "P54257"}
{:label "O95251", :id "O95251"}
{:label "P02751", :id "P02751"}
{:label "Q15051", :id "Q15051"}),
:options nil,
:edges ({:desc "Homo sapiens",
:color "red",
:from "P02751",
:label "",
:to "Q15185"}
{:desc "Homo sapiens",
:color "red",
:from "Q08752",
:label "",
:to "Q8IXQ4"}
{:desc "Homo sapiens",
:color "red",
:from "Q16543",
:label "",
:to "O95433"}
{:desc "Homo sapiens",
:color "red",
:from "P19320",
:label "",
:to "Q15185"}
{:desc "Homo sapiens",
:color "red",
:from "P02751",
:label "",
:to "P02751"}
{:desc "Homo sapiens",
:color "red",
:from "O95251",
:label "",
:to "Q08752"}
{:desc "Homo sapiens",
:color "red",
:from "Q16543",
:label "",
:to "Q08752"}
{:desc "Homo sapiens",
:color "red",
:from "O95433",
:label "",
:to "Q08752"}
{:desc "Homo sapiens",
:color "red",
:from "P02751",
:label "",
:to "Q08752"}
{:desc "Homo sapiens",
:color "red",
:from "Q15051",
:label "",
:to "Q08752"}
{:desc "Homo sapiens",
:color "red",
:from "P19320",
:label "",
:to "P19320"}
{:desc "Homo sapiens",
:color "red",
:from "P19320",
:label "",
:to "Q08752"}
{:desc "Homo sapiens",
:color "red",
:from "P54257",
:label "",
:to "Q08752"}
{:desc "Homo sapiens",
:color "red",
:from "Q08752",
:label "",
:to "Q15185"})}}]