Improve Codecov & Documentation

.JuliaFormatter.toml

@@ -1,5 +1,5 @@
 style = "yas"
-margin = 140
+margin = 165
 align_assignment = true
 align_conditional = true
 whitespace_ops_in_indices = false

.buildkite/run_tests.yml

@@ -1,3 +1,4 @@
+# DEBUG: until registered, Chmy.jl needs to be explicitly added in "command:" steps
 steps:
   - label: "CUDA Julia {{matrix.version}}"
     matrix:
@@ -13,6 +14,7 @@ steps:
     command: |
       julia -e 'println("--- :julia: Instantiating project")
                 using Pkg
+                Pkg.add(url="https://github.com/PTsolvers/Chmy.jl")
                 Pkg.develop(; path=pwd())' || exit 3
 
       julia -e 'println("+++ :julia: Running tests")
@@ -38,6 +40,7 @@ steps:
     command: |
       julia -e 'println("--- :julia: Instantiating project")
                 using Pkg
+                Pkg.add(url="https://github.com/PTsolvers/Chmy.jl")
                 Pkg.develop(; path=pwd())' || exit 3
 
       julia -e 'println("+++ :julia: Running tests")
@@ -46,7 +49,7 @@ steps:
     agents:
       queue: "juliagpu"
       rocm: "*"
-      rocmgpu: "gfx1101" # select Ludovic's Navi 3 card (ROCm 6.0)
+      rocmgpu: "*" #"gfx1101" # select Ludovic's Navi 3 card (ROCm 6.0)
     timeout_in_minutes: 120
     soft_fail:
       - exit_status: 3

.github/workflows/DocPreviewCleanup.yml

@@ -0,0 +1,34 @@
+name: Doc Preview Cleanup
+
+on:
+  pull_request:
+    types: [closed]
+
+jobs:
+  doc-preview-cleanup:
+    # Do not run on forks to avoid authorization errors
+    # Source: https://github.community/t/have-github-action-only-run-on-master-repo-and-not-on-forks/140840/18
+    # Note: This does not always work as intended - but you can just ignore
+    #       the failed CI runs after merging a PR
+    if: github.repository_owner == 'PTsolvers'
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout gh-pages branch
+        uses: actions/checkout@v4
+        with:
+          ref: gh-pages
+
+      - name: Delete preview and history
+        shell: bash
+        run: |
+            git config user.name "Documenter.jl"
+            git config user.email "documenter@juliadocs.github.io"
+            git rm -rf --ignore-unmatch "previews/PR$PRNUM"
+            git commit -m "delete preview" --allow-empty
+            git branch gh-pages-new $(echo "delete history" | git commit-tree HEAD^{tree})
+        env:
+            PRNUM: ${{ github.event.number }}
+
+      - name: Push changes
+        run: |
+            git push --force origin gh-pages-new:gh-pages

.github/workflows/Documentation.yml

@@ -1,3 +1,4 @@
+# DEBUG: until registered, Chmy.jl needs to be explicitly added in "Install dependencies" step
 name: Documentation
 
 on:
@@ -14,11 +15,15 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
-      - uses: julia-actions/setup-julia@v1
+      - uses: julia-actions/setup-julia@v2
         with:
-          version: '1.10'
+          version: '1'
       - name: Install dependencies
-        run: julia --project=docs/ -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd())); Pkg.instantiate()'
+        run: |
+          julia --project=docs/ -e 'using Pkg
+                                    Pkg.add(url="https://github.com/PTsolvers/Chmy.jl")
+                                    Pkg.develop(PackageSpec(path=pwd()))
+                                    Pkg.instantiate()'
       - name: Build and deploy
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # If authenticating with GitHub Actions token

.github/workflows/UnitTests.yml

@@ -1,3 +1,4 @@
+# DEBUG: until registered, Chmy.jl needs to be explicitly added in "Run tests" (instead of using "legacy testing")
 name: Unit Tests
 on:
   push:
@@ -45,7 +46,7 @@ jobs:
         #     allow_failure: true
     steps:
       - uses: actions/checkout@v4
-      - uses: julia-actions/setup-julia@v1
+      - uses: julia-actions/setup-julia@v2
         with:
           version: ${{ matrix.version }}
           arch: ${{ matrix.arch }}
@@ -59,8 +60,21 @@ jobs:
             ${{ runner.os }}-test-${{ env.cache-name }}-
             ${{ runner.os }}-test-
             ${{ runner.os }}-
-      - uses: julia-actions/julia-buildpkg@latest
-      - uses: julia-actions/julia-runtest@latest
+      # --- legacy testing
+      # - uses: julia-actions/julia-buildpkg@latest
+      # - uses: julia-actions/julia-runtest@latest
+      # --- testing with un-registered Chmy.jl
+      - name: Run tests
+        run: |
+          julia -e 'println("--- :julia: Instantiating project")
+                    using Pkg
+                    Pkg.add(url="https://github.com/PTsolvers/Chmy.jl")
+                    Pkg.develop(; path=pwd())'
+
+          julia -e 'println("+++ :julia: Running tests")
+                    using Pkg
+                    Pkg.test("FastIce"; coverage=true)'
+      # codecov
       - uses: julia-actions/julia-processcoverage@v1
       - uses: codecov/codecov-action@v4
         with:

Project.toml

@@ -1,41 +1,26 @@
 name = "FastIce"
 uuid = "e0de9f13-a007-490e-b696-b07d031015ca"
 authors = ["Ludovic Raess <ludovic.rass@gmail.com>, Ivan Utkin <utkin@hey.com>, Samuel Omlin <samuel.omlin@cscs.ch> and contributors"]
-version = "0.2.0"
+version = "0.3.0"
 
 [deps]
 Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
+Chmy = "33a72cf0-4690-46d7-b987-06506c2248b9"
 ElasticArrays = "fdbdab4c-e67f-52f5-8c3f-e7b388dad3d4"
 GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326"
 HDF5 = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f"
-ImplicitGlobalGrid = "4d7a3746-15be-11ea-1130-334b0c4f5fa0"
 KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c"
 LightXML = "9c8b4983-aa76-5018-a973-4c85ecc9e179"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 Logging = "56ddb016-857b-54e1-b83d-db4d58db5568"
 MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195"
-OffsetArrays = "6fe1bfb0-de20-5000-8ca7-80f57d26f881"
-Preferences = "21216c6a-2e73-6563-6e65-726566657250"
 Printf = "de0858da-6303-5e67-8744-51eddeeeb8d7"
 
-[weakdeps]
-AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e"
-CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
-
-[extensions]
-FastIceAMDGPUExt = "AMDGPU"
-FastIceCUDAExt = "CUDA"
-
 [compat]
-AMDGPU = "0.8"
 Adapt = "4"
-CUDA = "5"
 ElasticArrays = "1"
 GeometryBasics = "0.4"
-HDF5 = "0.17"
-ImplicitGlobalGrid = "0.15"
+HDF5 = "0.16, 0.17"
 KernelAbstractions = "0.9"
 LightXML = "0.9"
 MPI = "0.20"
-OffsetArrays = "1"
-Preferences = "1"

docs/src/lib/modules.md

@@ -1,26 +1,5 @@
 # Modules
 
-## Grids
-
-```@autodocs
-Modules = [FastIce.Grids]
-Order   = [:type, :function]
-```
-
-## Distributed
-
-```@autodocs
-Modules = [FastIce.Distributed]
-Order   = [:type, :function]
-```
-
-## Kernel launch
-
-```@autodocs
-Modules = [FastIce.KernelLaunch]
-Order   = [:type, :function]
-```
-
 ## Writers
 
 ```@autodocs
@@ -33,4 +12,4 @@ Order   = [:type, :function]
 ```@autodocs
 Modules = [FastIce.LevelSets]
 Order   = [:type, :function]
-```
+```

scripts_future_API/Project.toml

@@ -1,9 +1,6 @@
 [deps]
-CairoMakie = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0"
+Chmy = "33a72cf0-4690-46d7-b987-06506c2248b9"
 FastIce = "e0de9f13-a007-490e-b696-b07d031015ca"
-FastIceTools = "14532042-4700-46e0-8dec-55d517bc1ae0"
-FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549"
-GLMakie = "e9467ef8-e4e7-5192-8a1a-b1aee30e663a"
 GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326"
 HDF5 = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f"
 JLD2 = "033835bb-8acc-5ee8-8aae-3f567f8a3819"