add NCI_Strdup #257
Workflow file for this run
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| name: ubuntu_openmpi | |
| on: | |
| push: | |
| branches: master | |
| paths-ignore: | |
| - '**/*.md' | |
| - '**/*.txt' | |
| - '**/*.1' | |
| - 'docs/*' | |
| - 'test/test_installed/*' | |
| pull_request: | |
| branches: master | |
| paths-ignore: | |
| - '**/*.md' | |
| - '**/*.txt' | |
| - '**/*.1' | |
| - 'docs/*' | |
| - 'test/test_installed/*' | |
| env: | |
| OPENMPI_VERSION: 5.0.2 | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 90 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install automake autoconf libtool libtool-bin m4 | |
| # install gfortran | |
| version=12 | |
| sudo add-apt-repository ppa:ubuntu-toolchain-r/test | |
| sudo apt-get update | |
| sudo apt-get install -y gcc-${version} gfortran-${version} | |
| sudo update-alternatives \ | |
| --install /usr/bin/gcc gcc /usr/bin/gcc-${version} 100 \ | |
| --slave /usr/bin/gfortran gfortran /usr/bin/gfortran-${version} \ | |
| --slave /usr/bin/gcov gcov /usr/bin/gcov-${version} | |
| echo "---- gcc/gfortran version ------------------------------" | |
| which gcc | |
| which gfortran | |
| gcc --version | |
| gfortran --version | |
| - name: Build OPENMPI | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| echo "Install OPENMPI ${OPENMPI_VERSION} in ${GITHUB_WORKSPACE}/OPENMPI" | |
| rm -rf OPENMPI ; mkdir OPENMPI ; cd OPENMPI | |
| VER_MAJOR=${OPENMPI_VERSION%.*} | |
| wget -q https://download.open-mpi.org/release/open-mpi/v${VER_MAJOR}/openmpi-${OPENMPI_VERSION}.tar.gz | |
| gzip -dc openmpi-${OPENMPI_VERSION}.tar.gz | tar -xf - | |
| cd openmpi-${OPENMPI_VERSION} | |
| ./configure --prefix=${GITHUB_WORKSPACE}/OPENMPI \ | |
| --silent \ | |
| --with-io-romio-flags="--with-file-system=ufs" \ | |
| CC=gcc \ | |
| FC=gfortran \ | |
| FCFLAGS=-fallow-argument-mismatch | |
| make -s LIBTOOLFLAGS=--silent V=1 -j 4 install > qout 2>&1 | |
| make -s -j 4 distclean >> qout 2>&1 | |
| - name: Build PnetCDF | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| autoreconf -i | |
| mkdir -p pnetcdf_output | |
| ./configure --prefix=${GITHUB_WORKSPACE}/PnetCDF \ | |
| --enable-option-checking=fatal \ | |
| --enable-profiling \ | |
| pnc_ac_debug=yes \ | |
| --enable-burst_buffering \ | |
| --enable-subfiling \ | |
| --enable-thread-safe \ | |
| --with-pthread \ | |
| --with-mpi=${GITHUB_WORKSPACE}/OPENMPI \ | |
| TESTMPIRUN="${GITHUB_WORKSPACE}/OPENMPI/bin/mpiexec --oversubscribe -n NP" \ | |
| TESTOUTDIR=${GITHUB_WORKSPACE}/pnetcdf_output | |
| make -j 8 tests | |
| - name: Print config.log | |
| if: ${{ always() }} | |
| run: | | |
| cat ${GITHUB_WORKSPACE}/config.log | |
| - name: make check | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| make check | |
| - name: Print test log files | |
| if: ${{ always() }} | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| fname=`find src test examples benchmarks -type f -name "*.log"` | |
| for f in $fname ; do \ | |
| bname=`basename $f` ; \ | |
| if test "x$bname" != xconfig.log ; then \ | |
| echo "-------- dump $f ----------------------------" ; \ | |
| cat $f ; \ | |
| fi ; \ | |
| done | |
| - name: make ptests | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| make ptests | |
| - name: make distcheck | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| make -j 8 distcheck DISTCHECK_CONFIGURE_FLAGS="--silent --with-mpi=${GITHUB_WORKSPACE}/OPENMPI" | |
| - name: make install | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| prefix_path=${GITHUB_WORKSPACE}/pnetcdf_install | |
| echo "---- test make install prefix=${prefix_path}" | |
| make install prefix=${prefix_path} | |
| test/tst_install.sh ${prefix_path} | |
| prefix_path=pnetcdf_install | |
| destdir_path=${GITHUB_WORKSPACE}/inst/ | |
| echo "---- test make install prefix=${prefix_path} DESTDIR=${destdir_path}" | |
| make install prefix=${prefix_path} DESTDIR=${destdir_path} | |
| test/tst_install.sh ${destdir_path}${prefix_path} | |
| - name: Cleanup | |
| if: ${{ always() }} | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| make -s distclean | |
| rm -rf ${GITHUB_WORKSPACE}/pnetcdf_output | |
| rm -rf ${GITHUB_WORKSPACE}/OPENMPI | |
| rm -rf ${GITHUB_WORKSPACE}/pnetcdf_install | |
| rm -rf ${GITHUB_WORKSPACE}/inst | |