version.json

{
  "lodestone-0.9.8" : {
    "preprocessing-0.9.8" : {
      "samtools_version" : "1.12",
      "bcftools_version" : "1.12",
      "htslib_version" : "1.12",
      "bedtools_version" : "2.29.2",
      "bowtie2_version" : "2.4.2",
      "fastp_version" : "0.20.1",
      "fastqc_version" : "0.11.9",
      "fqtools_version" : "2.3",
      "kraken2_version" : "2.1.1",
      "afanc_version" : "0.10.2",
      "mykrobe_version" : "0.12.1",
      "bwa_version" : "0.7.17",
      "mash_version" : "2.3",
      "fastani_version" : "1.33"
    },
    "vcfpredict-0.9.8" : {
      "vcfmix_version" : "d4693344bf612780723e39ce27c8ae3868f95417"
    },
    "clockwork-0.9.8" : {
      "samtools_version" : "1.12",
      "htslib_version" : "1.12",
      "bcftools_version" : "1.12",
      "minimap2_version" : "2.17",
      "picard_version" : "2.18.16",
      "gramtools_version" : "8af53f6c8c0d72ef95223e89ab82119b717044f2",
      "vt_version" : "2187ff6347086e38f71bd9f8ca622cd7dcfbb40c",
      "minos_version" : "0.11.0",
      "cortex_version" : "3a235272e4e0121be64527f01e73f9e066d378d3",
      "vcftools_version" : "0.1.15",
      "mccortex_version" : "97aba198d632ee98ac1aa496db33d1a7a8cb7e51",
      "stampy_version" : "1.0.32r3761",
      "python_version" : "3.6.5",
      "clockwork_version" : "2364dec4cbf25c844575e19e8fe0a319d10721b5"
    },
    "tbprofiler-0.9.8" : {},
    "databases" : {
      "kraken_db" : "s3://microbial-bioin-sp3/kraken_pluspf_16gb/",
      "bowtie2_index" : "s3://microbial-bioin-sp3/bowtie_hg19",
      "bowtie_index_name" : "hg19_1kgmaj",
      "afanc_myco_db" : "s3://microbial-bioin-sp3/Mycobacteriaciae_DB_7.0/"
    }
  }
}