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@PennChopMicrobiomeProgram

PennChopMicrobiomeProgram

Bioinformatics software for microbiome science

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  1. adonisplus adonisplus Public

    R 3 2

  2. mirix mirix Public

    Quantify the susceptibility of a bacterial community to an antibiotic.

    R 3 1

  3. dnabc dnabc Public

    Identify DNA barcodes in high-throughput sequencing data files

    Python 6

  4. unassigner unassigner Public

    Type strain identification for 16S reads

    Python 5 5

Repositories

Showing 10 of 27 repositories
  • 16S_QIIME2 Public template Forked from junglee0713/16S_QIIME2

    Snakemake based 16S QIIME2 pipeline

    PennChopMicrobiomeProgram/16S_QIIME2’s past year of commit activity
    Python 1 7 0 2 Updated Jan 6, 2025
  • seqBackup Public
    PennChopMicrobiomeProgram/seqBackup’s past year of commit activity
    Python 1 5 1 0 Updated Dec 17, 2024
  • SampleRegistry Public

    Web application to keep track of samples sequenced

    PennChopMicrobiomeProgram/SampleRegistry’s past year of commit activity
    Python 0 3 7 0 Updated Dec 5, 2024
  • unassigner Public

    Type strain identification for 16S reads

    PennChopMicrobiomeProgram/unassigner’s past year of commit activity
    Python 5 5 8 0 Updated Dec 2, 2024
  • adonisplus Public
    PennChopMicrobiomeProgram/adonisplus’s past year of commit activity
    R 3 GPL-3.0 2 1 0 Updated Nov 23, 2024
  • CHOP_metadata_checker Public
    PennChopMicrobiomeProgram/CHOP_metadata_checker’s past year of commit activity
    HTML 0 3 12 0 Updated Nov 21, 2024
  • dnabc Public

    Identify DNA barcodes in high-throughput sequencing data files

    PennChopMicrobiomeProgram/dnabc’s past year of commit activity
    Python 0 GPL-2.0 6 0 1 Updated Nov 18, 2024
  • PCMP_ITS_pipeline Public
    PennChopMicrobiomeProgram/PCMP_ITS_pipeline’s past year of commit activity
    R 0 1 0 0 Updated Nov 6, 2024
  • PennChopMicrobiomeProgram.github.io Public

    Dev board for PCMP

    PennChopMicrobiomeProgram/PennChopMicrobiomeProgram.github.io’s past year of commit activity
    SCSS 0 0 0 0 Updated Oct 23, 2024
  • mirix Public

    Quantify the susceptibility of a bacterial community to an antibiotic.

    PennChopMicrobiomeProgram/mirix’s past year of commit activity
    R 3 1 1 1 Updated Jul 18, 2024
View all repositories

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