From 3cf4b95309115dcd4173ae71464328a42f9d57c6 Mon Sep 17 00:00:00 2001 From: Ulthran Date: Mon, 24 Jun 2024 22:35:19 -0400 Subject: [PATCH] Update 'dnabc.py' to 'dnabc' in README --- README.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index 096d3ee..d07f640 100644 --- a/README.md +++ b/README.md @@ -15,24 +15,24 @@ Identify DNA barcodes in FASTQ data files and write demultiplexed data. git clone https://github.com/PennChopMicrobiomeProgram/dnabc.git cd dnabc pip install . -dnabc.py -h +dnabc -h ``` ### DockerHub ```bash docker pull ctbushman/dnabc:latest -docker run --rm --name dnabc dnabc dnabc.py -h +docker run --rm --name dnabc dnabc dnabc -h ``` ## Usage -The Python library provides a command-line program, `dnabc.py`. The +The Python library provides a command-line program, `dnabc`. The program takes three positional arguments: a file of barcodes, a FASTQ file of forward reads, and a FASTQ file of reverse reads. ```bash -dnabc.py barcodes.txt myreads_R1.fastq myreads_R2.fastq +dnabc barcodes.txt myreads_R1.fastq myreads_R2.fastq ``` The FASTQ files can be compressed with `gzip`, and are treated as