Fix codacy flagged issues

.github/PULL_REQUEST_TEMPLATE.md

@@ -1,20 +1,17 @@
 ### Summary :memo:
-_Write an overview about it._
-
 
+_Write an overview about it._
 
 ### Details
-_Describe more what you did on changes._
-
 
+_Describe more what you did on changes._
 
 ### Bugfixes :bug: (delete if didn't have any)
 
-
-
 ### Checks
 
 If this is for a release:
--   [ ] I have updated the version number in `src/dnabc/__init__.py`
--   [ ] I have updated the README with any appropriate documentation
--   [ ] I have updated `tests` with any appropriate tests
+
+- [ ] I have updated the version number in `src/dnabc/__init__.py`
+- [ ] I have updated the README with any appropriate documentation
+- [ ] I have updated `tests` with any appropriate tests

pyproject.toml

@@ -56,8 +56,8 @@ test = ["pytest", "pytest-cov"]
 "Source" = "https://github.com/PennChopMicrobiomeProgram/dnabc"
 
 [project.scripts]  # Optional
-"dnabc.py" = "dnabclib.main:main"
-"split_samplelanes.py" = "dnabclib.split_samplelanes:main"
+"dnabc.py" = "dnabc.main:main"
+"split_samplelanes.py" = "dnabc.split_samplelanes:main"
 
 [build-system]
 requires = ["setuptools>=61.0.0", "wheel"]

src/dnabc/assigner.py

@@ -9,7 +9,7 @@ def __init__(self, samples, mismatches=0, revcomp=True):
         self.samples = samples
         if mismatches not in self.allowed_mismatches:
             raise ValueError(
-                "Only %s mismatches allowed (got %s)" % (allowed_mismatches, mismatches)
+                "Only %s mismatches allowed (got %s)" % (self.allowed_mismatches, mismatches)
             )
         self.mismatches = mismatches
         self.revcomp = revcomp

src/dnabc/main.py

@@ -2,6 +2,7 @@
 import gzip
 import os
 
+from . import __version__
 from .writer import PairedFastqWriter
 from .sample import load_sample_barcodes
 from .seqfile import SequenceFile