Update test refs to lib

src/dnabc/main.py

@@ -1,7 +1,5 @@
 import argparse
-from cmath import log
 import gzip
-import json
 import os
 
 from .writer import PairedFastqWriter

src/dnabc/seqfile.py

@@ -1,6 +1,3 @@
-import itertools
-
-
 # Factory function for SequenceFile classes
 def SequenceFile(fwd, rev, fwd_idx=None, rev_idx=None):
     if fwd_idx and rev_idx:

tests/test_assigner.py

@@ -1,7 +1,7 @@
 from collections import namedtuple, Counter
 import unittest
 
-from dnabclib.assigner import (
+from src.dnabc.assigner import (
     BarcodeAssigner,
     deambiguate,
     reverse_complement,

tests/test_main.py

@@ -4,7 +4,7 @@
 import tempfile
 import unittest
 
-from dnabclib.main import main
+from src.dnabc.main import main
 
 
 class FastqDemultiplexTests(unittest.TestCase):

tests/test_sample.py

@@ -1,6 +1,6 @@
 import unittest
 
-from dnabclib.sample import (
+from src.dnabc.sample import (
     SampleBarcode,
     load_sample_barcodes,
     check_sample_names,

tests/test_seqfile.py

@@ -3,12 +3,12 @@
 import os.path
 import unittest
 
-from dnabclib.seqfile import (
+from src.dnabc.seqfile import (
     IndexFastqSequenceFile,
     NoIndexFastqSequenceFile,
     parse_fastq,
 )
-from dnabclib.assigner import BarcodeAssigner
+from src.dnabc.assigner import BarcodeAssigner
 
 
 class MockWriter(object):

tests/test_writer.py

@@ -4,7 +4,7 @@
 import tempfile
 import unittest
 
-from dnabclib.writer import FastaWriter, FastqWriter, PairedFastqWriter
+from src.dnabc.writer import FastaWriter, FastqWriter, PairedFastqWriter
 
 MockFastaRead = namedtuple("Read", "desc seq")
 MockFastqRead = namedtuple("Read", "desc seq qual")