From c20670f033d0b41f42ac14eeeadcc933475a7966 Mon Sep 17 00:00:00 2001
From: Ulthran <ctbushman@gmail.com>
Date: Fri, 21 Jun 2024 14:00:44 -0400
Subject: [PATCH] Move mirixdb import to mirix function doc

---
 .Rbuildignore        |  1 +
 R/abx_index.R        |  1 +
 R/mirix-package.R    |  7 -------
 man/mirix-package.Rd | 11 -----------
 4 files changed, 2 insertions(+), 18 deletions(-)
 delete mode 100644 R/mirix-package.R
 delete mode 100644 man/mirix-package.Rd

diff --git a/.Rbuildignore b/.Rbuildignore
index 7fcf037..497df46 100644
--- a/.Rbuildignore
+++ b/.Rbuildignore
@@ -7,3 +7,4 @@
 ^data-raw$
 ^R/abx_index_old\.R$
 ^\.github$
+^.*\.Rproj$
diff --git a/R/abx_index.R b/R/abx_index.R
index 5c6aacb..d60c766 100644
--- a/R/abx_index.R
+++ b/R/abx_index.R
@@ -111,6 +111,7 @@ mirix_gentamicin <- function(abundance,
 #'   0.5 is typical. For relative abundances, a number that is slightly lower
 #'   than the lowest relative abundance will work.
 #'
+#' @import mirixdb
 #' @return The MiRIx value
 #' @export
 mirix <- function (abundance, susceptibility, replace_zero = 1e-4) {
diff --git a/R/mirix-package.R b/R/mirix-package.R
deleted file mode 100644
index b7762dd..0000000
--- a/R/mirix-package.R
+++ /dev/null
@@ -1,7 +0,0 @@
-#' @keywords internal
-"_PACKAGE"
-
-## usethis namespace: start
-#' @import mirixdb
-## usethis namespace: end
-NULL
diff --git a/man/mirix-package.Rd b/man/mirix-package.Rd
deleted file mode 100644
index c71f909..0000000
--- a/man/mirix-package.Rd
+++ /dev/null
@@ -1,11 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/mirix-package.R
-\docType{package}
-\name{mirix-package}
-\alias{mirix}
-\alias{mirix-package}
-\title{mirix: Modeling the Susceptibility of a Bacterial Community to Antibiotics}
-\description{
-Calculates an index for a given bacterial community's susceptibility to specified antibiotics.
-}
-\keyword{internal}