Merge pull request #2 from kylebittinger/rename-primertrim

Rename primertrim
PennChopMicrobiomeProgram · Apr 14, 2021 · 0093a0f · 0093a0f
2 parents 2f7a9d9 + 3b82461
commit 0093a0f
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Showing 2 changed files with 8 additions and 8 deletions.
diff --git a/README.md b/README.md
@@ -5,8 +5,8 @@ Detect short primer sequences in FASTQ reads and trim the reads accordingly.
 ## Installation
 
 ```bash
-git clone https://github.com/PennChopMicrobiomeProgram/Primer_trim.git
-cd Primer_trim
+git clone https://github.com/PennChopMicrobiomeProgram/primertrim.git
+cd primertrim
 pip install -e .
 ```
 
@@ -41,7 +41,7 @@ stage to work.
 
 ## Example
 
-```
-remove_primers.py GCATCGATGAAGAACGCAGC -i sample.fastq \
-    -o sample_trimmed.fastq --log sample_trimmed.log --alignment
+```bash
+ptrim GCATCGATGAAGAACGCAGC -i sample.fastq -o sample_trimmed.fastq \
+    --log sample_trimmed.log --alignment
 ```
diff --git a/setup.py b/setup.py
@@ -2,15 +2,15 @@
 
 setup(
     name='primertrim',
-    version='0.0.1',
+    version='0.0.2',
     description='Trim primer sequences from FASTQ files',
     author='PennCHOP Microbiome Program',
     author_email='BITTINGERK@chop.edu',
-    url='https://github.com/PennChopMicrobiomeProgram/Primer_trim',
+    url='https://github.com/PennChopMicrobiomeProgram/primertrim',
     packages=['primertrim'],
     entry_points = {
         'console_scripts': [
-            'remove_primers.py=primertrim.command:main',
+            'ptrim=primertrim.command:main',
         ],
     }
 )