diff --git a/README.md b/README.md index 7a2b88a..8d4a579 100644 --- a/README.md +++ b/README.md @@ -5,8 +5,8 @@ Detect short primer sequences in FASTQ reads and trim the reads accordingly. ## Installation ```bash -git clone https://github.com/PennChopMicrobiomeProgram/Primer_trim.git -cd Primer_trim +git clone https://github.com/PennChopMicrobiomeProgram/primertrim.git +cd primertrim pip install -e . ``` @@ -41,7 +41,7 @@ stage to work. ## Example -``` -remove_primers.py GCATCGATGAAGAACGCAGC -i sample.fastq \ - -o sample_trimmed.fastq --log sample_trimmed.log --alignment +```bash +ptrim GCATCGATGAAGAACGCAGC -i sample.fastq -o sample_trimmed.fastq \ + --log sample_trimmed.log --alignment ``` diff --git a/setup.py b/setup.py index 0b241a7..47db768 100644 --- a/setup.py +++ b/setup.py @@ -2,15 +2,15 @@ setup( name='primertrim', - version='0.0.1', + version='0.0.2', description='Trim primer sequences from FASTQ files', author='PennCHOP Microbiome Program', author_email='BITTINGERK@chop.edu', - url='https://github.com/PennChopMicrobiomeProgram/Primer_trim', + url='https://github.com/PennChopMicrobiomeProgram/primertrim', packages=['primertrim'], entry_points = { 'console_scripts': [ - 'remove_primers.py=primertrim.command:main', + 'ptrim=primertrim.command:main', ], } )