Reformat

PennChopMicrobiomeProgram · Jun 5, 2024 · b6bf0fd · b6bf0fd
1 parent d1e42db
commit b6bf0fd
Showing 1 changed file with 6 additions and 2 deletions.
diff --git a/primertrim/matcher.py b/primertrim/matcher.py
@@ -154,12 +154,16 @@ def find_in_seqs(self, seqs):
                 start_idx = hit["qlen"] - hit["qend"]
                 end_idx = hit["qlen"] - hit["qstart"] + 1
             if start_idx >= end_idx:
-                raise ValueError("Invalid start and end indices ({} is greater than or equal to {})".format(start_idx, end_idx))
+                raise ValueError(
+                    "Invalid start and end indices ({} is greater than or equal to {})".format(
+                        start_idx, end_idx
+                    )
+                )
             seq = seqs[seq_id]
             primerseq = seq[start_idx:end_idx]
             matchobj = PrimerMatch("Alignment", start_idx, mismatches, primerseq)
             yield seq_id, matchobj
 
 
 class TooManyMismatchesException(Exception):
-    pass
+    pass