Fix command-line test

PennChopMicrobiomeProgram · Apr 12, 2019 · 211242e · 211242e
1 parent 4a0b175
commit 211242e
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/tests/test_command.py b/tests/test_command.py
@@ -17,7 +17,9 @@ def test_main(self):
         with open(query_fp, "w") as f:
             f.write(query_fasta)
         main([
-            query_fp, self.dir, "--type_strain_fasta", REF_FP])
+            query_fp,
+            "--output_dir", self.dir,
+            "--type_strain_fasta", REF_FP])
 
         with(open(os.path.join(self.dir, "unassigner_output.tsv"))) as f:
             header_line = next(f)

diff --git a/tests/test_unassignment_probability.py b/tests/test_unassignment_probability.py