setup.py

from distutils.core import setup
from Cython.Build import cythonize
from Cython.Distutils import build_ext
from distutils.extension import Extension
import numpy

setup(cmdclass = {'build_ext': build_ext},
ext_modules=[ Extension("ML", ["ML.pyx"], libraries=["m"], extra_compile_args = ["-ffast-math"], include_dirs=[numpy.get_include()]), Extension("mcmc", ["mcmc.pyx"], libraries=["m"], extra_compile_args = ["-ffast-math"], include_dirs=[numpy.get_include()]), Extension("config", ["config.pyx"]), Extension("utils", ["utils.pyx"], include_dirs=[numpy.get_include()]), Extension("ML_gamma", ["ML_gamma.pyx"], libraries=["m"], extra_compile_args = ["-ffast-math"], include_dirs=[numpy.get_include()]), Extension("mcmc_gamma", ["mcmc_gamma.pyx"], libraries=["m"], extra_compile_args = ["-ffast-math"], include_dirs=[numpy.get_include()])])

#ext_modules=[ Extension("ML", ["ML.pyx"], libraries=["m"], extra_compile_args = ["-O0"], include_dirs=[numpy.get_include()]), Extension("mcmc", ["mcmc.pyx"], libraries=["m"], extra_compile_args = ["-O0"], include_dirs=[numpy.get_include()]), Extension("config", ["config.pyx"]), Extension("utils", ["utils.pyx"], include_dirs=[numpy.get_include()]), Extension("ML_gamma", ["ML_gamma.pyx"], libraries=["m"], extra_compile_args = ["-O0"], include_dirs=[numpy.get_include()]), Extension("mcmc_gamma", ["mcmc_gamma.pyx"], libraries=["m"], extra_compile_args = ["-O0"], include_dirs=[numpy.get_include()])])

#ext_modules=[ Extension("ML", ["ML.pyx"], libraries=["m"], include_dirs=[numpy.get_include()]), Extension("mcmc", ["mcmc.pyx"], libraries=["m"], include_dirs=[numpy.get_include()]), Extension("config", ["config.pyx"]), Extension("utils", ["utils.pyx"], include_dirs=[numpy.get_include()]), Extension("ML_gamma", ["ML_gamma.pyx"], libraries=["m"], include_dirs=[numpy.get_include()]), Extension("mcmc_gamma", ["mcmc_gamma.pyx"], libraries=["m"], include_dirs=[numpy.get_include()])])
#setup(ext_modules=cythonize(['utils.pyx', "ML.pyx", "config.pyx","mcmc.pyx"]))