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BONSampler

An abstract type that is the supertype for all methods for sampling BiodiversityObservationNetworks.

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BalancedAcceptance

BalancedAcceptance is a type of BONSampler for generating BiodiversityObservationNetworks with spatial spreading.

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BiodiversityObservationNetwork

A set of Nodes that together create a sampling design for monitoring biodiversity.

BiodiversityObservationNetwork extends the GeoInterface MultiPointTrait type.

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Grid

Grid is a type of BONSampler for generating BiodiversityObservationNetworks with Nodes structured as a systematic grid over the study area.

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KMeans

KMeans is a BONSampler that generates BiodiversityObservationNetworks that aim to be representative of the distribution of environmental variables across an extent represented as a RasterStack.

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Node

A single sampling location within a BiodiversityObservationNetwork, represented as a coordinate.

A Node extends the GeoInterface PointTrait type.

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Polygon

A Polygon extends the GeoInterface API for both PolygonTrait and MultiPolygonTraits.

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Raster

A Raster stores gridded data. The internal representation of this data can be an SDMLayer (from SimpleSDMLayers.jl) or a Matrix.

Raster extends the RasterTrait type from GeoInterface.

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RasterStack

A RasterStack is a set of Rasters, which all have the same resolution and extent, for storing multiple raster-like environmental variables

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SimpleRandom

SimpleRandom is a BONSampler for sampling BiodiversityObservationNetworks where each location in the spatial extent has the same probability of inclusion.

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SpatiallyStratified

SpatiallyStratified is a BONSampler for choosing sites across a set of different spatial stratum.

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julia
sample

Attempt to use BONSampler to sample from a valid geom

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julia
sample

Sample from geom. This is highest level dispatch which assumes nothing about the geometry the user is trying to apply BONSampler to.

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julia
BONSampler

An abstract type that is the supertype for all methods for sampling BiodiversityObservationNetworks.

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julia
BalancedAcceptance

BalancedAcceptance is a type of BONSampler for generating BiodiversityObservationNetworks with spatial spreading.

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',5))]),s("details",v,[s("summary",null,[e[6]||(e[6]=s("a",{id:"BiodiversityObservationNetworks.BiodiversityObservationNetwork",href:"#BiodiversityObservationNetworks.BiodiversityObservationNetwork"},[s("span",{class:"jlbinding"},"BiodiversityObservationNetworks.BiodiversityObservationNetwork")],-1)),e[7]||(e[7]=i()),o(t,{type:"info",class:"jlObjectType jlType",text:"Type"})]),e[8]||(e[8]=a('
julia
BiodiversityObservationNetwork

A set of Nodes that together create a sampling design for monitoring biodiversity.

BiodiversityObservationNetwork extends the GeoInterface MultiPointTrait type.

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julia
Grid

Grid is a type of BONSampler for generating BiodiversityObservationNetworks with Nodes structured as a systematic grid over the study area.

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julia
KMeans

KMeans is a BONSampler that generates BiodiversityObservationNetworks that aim to be representative of the distribution of environmental variables across an extent represented as a RasterStack.

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source

',5))]),s("details",u,[s("summary",null,[e[15]||(e[15]=s("a",{id:"BiodiversityObservationNetworks.Node",href:"#BiodiversityObservationNetworks.Node"},[s("span",{class:"jlbinding"},"BiodiversityObservationNetworks.Node")],-1)),e[16]||(e[16]=i()),o(t,{type:"info",class:"jlObjectType jlType",text:"Type"})]),e[17]||(e[17]=a('
julia
Node

A single sampling location within a BiodiversityObservationNetwork, represented as a coordinate.

A Node extends the GeoInterface PointTrait type.

source

',4))]),s("details",g,[s("summary",null,[e[18]||(e[18]=s("a",{id:"BiodiversityObservationNetworks.Polygon",href:"#BiodiversityObservationNetworks.Polygon"},[s("span",{class:"jlbinding"},"BiodiversityObservationNetworks.Polygon")],-1)),e[19]||(e[19]=i()),o(t,{type:"info",class:"jlObjectType jlType",text:"Type"})]),e[20]||(e[20]=a('
julia
Polygon

A Polygon extends the GeoInterface API for both PolygonTrait and MultiPolygonTraits.

source

',3))]),s("details",h,[s("summary",null,[e[21]||(e[21]=s("a",{id:"BiodiversityObservationNetworks.Raster",href:"#BiodiversityObservationNetworks.Raster"},[s("span",{class:"jlbinding"},"BiodiversityObservationNetworks.Raster")],-1)),e[22]||(e[22]=i()),o(t,{type:"info",class:"jlObjectType jlType",text:"Type"})]),e[23]||(e[23]=a('
julia
Raster

A Raster stores gridded data. The internal representation of this data can be an SDMLayer (from SimpleSDMLayers.jl) or a Matrix.

Raster extends the RasterTrait type from GeoInterface.

source

',4))]),s("details",m,[s("summary",null,[e[24]||(e[24]=s("a",{id:"BiodiversityObservationNetworks.RasterStack",href:"#BiodiversityObservationNetworks.RasterStack"},[s("span",{class:"jlbinding"},"BiodiversityObservationNetworks.RasterStack")],-1)),e[25]||(e[25]=i()),o(t,{type:"info",class:"jlObjectType jlType",text:"Type"})]),e[26]||(e[26]=a('
julia
RasterStack

A RasterStack is a set of Rasters, which all have the same resolution and extent, for storing multiple raster-like environmental variables

source

',3))]),s("details",f,[s("summary",null,[e[27]||(e[27]=s("a",{id:"BiodiversityObservationNetworks.SimpleRandom",href:"#BiodiversityObservationNetworks.SimpleRandom"},[s("span",{class:"jlbinding"},"BiodiversityObservationNetworks.SimpleRandom")],-1)),e[28]||(e[28]=i()),o(t,{type:"info",class:"jlObjectType jlType",text:"Type"})]),e[29]||(e[29]=a('
julia
SimpleRandom

SimpleRandom is a BONSampler for sampling BiodiversityObservationNetworks where each location in the spatial extent has the same probability of inclusion.

source

',3))]),s("details",j,[s("summary",null,[e[30]||(e[30]=s("a",{id:"BiodiversityObservationNetworks.SpatiallyStratified",href:"#BiodiversityObservationNetworks.SpatiallyStratified"},[s("span",{class:"jlbinding"},"BiodiversityObservationNetworks.SpatiallyStratified")],-1)),e[31]||(e[31]=i()),o(t,{type:"info",class:"jlObjectType jlType",text:"Type"})]),e[32]||(e[32]=a('
julia
SpatiallyStratified

SpatiallyStratified is a BONSampler for choosing sites across a set of different spatial stratum.

source

',3))]),s("details",N,[s("summary",null,[e[33]||(e[33]=s("a",{id:"BiodiversityObservationNetworks.sample-Tuple{BONSampler, Union{BiodiversityObservationNetwork, Polygon, Raster, RasterStack, Vector{<:Polygon}}}",href:"#BiodiversityObservationNetworks.sample-Tuple{BONSampler, Union{BiodiversityObservationNetwork, Polygon, Raster, RasterStack, Vector{<:Polygon}}}"},[s("span",{class:"jlbinding"},"BiodiversityObservationNetworks.sample")],-1)),e[34]||(e[34]=i()),o(t,{type:"info",class:"jlObjectType jlMethod",text:"Method"})]),e[35]||(e[35]=a('
julia
sample

Attempt to use BONSampler to sample from a valid geom

source

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sample

Sample from geom. This is highest level dispatch which assumes nothing about the geometry the user is trying to apply BONSampler to.

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BONSampler

An abstract type that is the supertype for all methods for sampling BiodiversityObservationNetworks.

source

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julia
BiodiversityObservationNetwork

A set of Nodes that together create a sampling design for monitoring biodiversity.

BiodiversityObservationNetwork extends the GeoInterface MultiPointTrait type.

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Grid

Grid is a type of BONSampler for generating BiodiversityObservationNetworks with Nodes structured as a systematic grid over the study area.

Arguments:

  • longitude_spacing

  • latitude_spacing

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KMeans

KMeans is a BONSampler that generates BiodiversityObservationNetworks that aim to be representative of the distribution of environmental variables across an extent represented as a RasterStack.

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  • k: the number of sampling sites

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',5))]),s("details",k,[s("summary",null,[e[12]||(e[12]=s("a",{id:"BiodiversityObservationNetworks.Node",href:"#BiodiversityObservationNetworks.Node"},[s("span",{class:"jlbinding"},"BiodiversityObservationNetworks.Node")],-1)),e[13]||(e[13]=i()),o(t,{type:"info",class:"jlObjectType jlType",text:"Type"})]),e[14]||(e[14]=a('
julia
Node

A single sampling location within a BiodiversityObservationNetwork, represented as a coordinate.

A Node extends the GeoInterface PointTrait type.

source

',4))]),s("details",u,[s("summary",null,[e[15]||(e[15]=s("a",{id:"BiodiversityObservationNetworks.Polygon",href:"#BiodiversityObservationNetworks.Polygon"},[s("span",{class:"jlbinding"},"BiodiversityObservationNetworks.Polygon")],-1)),e[16]||(e[16]=i()),o(t,{type:"info",class:"jlObjectType jlType",text:"Type"})]),e[17]||(e[17]=a('
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Polygon

A Polygon extends the GeoInterface API for both PolygonTrait and MultiPolygonTraits.

source

',3))]),s("details",g,[s("summary",null,[e[18]||(e[18]=s("a",{id:"BiodiversityObservationNetworks.Raster",href:"#BiodiversityObservationNetworks.Raster"},[s("span",{class:"jlbinding"},"BiodiversityObservationNetworks.Raster")],-1)),e[19]||(e[19]=i()),o(t,{type:"info",class:"jlObjectType jlType",text:"Type"})]),e[20]||(e[20]=a('
julia
Raster

A Raster stores gridded data. The internal representation of this data can be an SDMLayer (from SimpleSDMLayers.jl) or a Matrix.

Raster extends the RasterTrait type from GeoInterface.

source

',4))]),s("details",h,[s("summary",null,[e[21]||(e[21]=s("a",{id:"BiodiversityObservationNetworks.RasterStack",href:"#BiodiversityObservationNetworks.RasterStack"},[s("span",{class:"jlbinding"},"BiodiversityObservationNetworks.RasterStack")],-1)),e[22]||(e[22]=i()),o(t,{type:"info",class:"jlObjectType jlType",text:"Type"})]),e[23]||(e[23]=a('
julia
RasterStack

A RasterStack is a set of Rasters, which all have the same resolution and extent, for storing multiple raster-like environmental variables

source

',3))]),s("details",m,[s("summary",null,[e[24]||(e[24]=s("a",{id:"BiodiversityObservationNetworks.SimpleRandom",href:"#BiodiversityObservationNetworks.SimpleRandom"},[s("span",{class:"jlbinding"},"BiodiversityObservationNetworks.SimpleRandom")],-1)),e[25]||(e[25]=i()),o(t,{type:"info",class:"jlObjectType jlType",text:"Type"})]),e[26]||(e[26]=a('
julia
SimpleRandom

SimpleRandom is a BONSampler for sampling BiodiversityObservationNetworks where each location in the spatial extent has the same probability of inclusion.

source

',3))]),s("details",j,[s("summary",null,[e[27]||(e[27]=s("a",{id:"BiodiversityObservationNetworks.SpatiallyStratified",href:"#BiodiversityObservationNetworks.SpatiallyStratified"},[s("span",{class:"jlbinding"},"BiodiversityObservationNetworks.SpatiallyStratified")],-1)),e[28]||(e[28]=i()),o(t,{type:"info",class:"jlObjectType jlType",text:"Type"})]),e[29]||(e[29]=a('
julia
SpatiallyStratified

SpatiallyStratified is a BONSampler for choosing sites across a set of different spatial stratum.

source

',3))]),s("details",N,[s("summary",null,[e[30]||(e[30]=s("a",{id:"BiodiversityObservationNetworks.sample-Tuple{BONSampler, Union{BiodiversityObservationNetwork, Polygon, Raster, RasterStack, Vector{<:Polygon}}}",href:"#BiodiversityObservationNetworks.sample-Tuple{BONSampler, Union{BiodiversityObservationNetwork, Polygon, Raster, RasterStack, Vector{<:Polygon}}}"},[s("span",{class:"jlbinding"},"BiodiversityObservationNetworks.sample")],-1)),e[31]||(e[31]=i()),o(t,{type:"info",class:"jlObjectType jlMethod",text:"Method"})]),e[32]||(e[32]=a('
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sample

Attempt to use BONSampler to sample from a valid geom

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',3))]),s("details",O,[s("summary",null,[e[33]||(e[33]=s("a",{id:"BiodiversityObservationNetworks.sample-Union{Tuple{T}, Tuple{BONSampler, T}} where T",href:"#BiodiversityObservationNetworks.sample-Union{Tuple{T}, Tuple{BONSampler, T}} where T"},[s("span",{class:"jlbinding"},"BiodiversityObservationNetworks.sample")],-1)),e[34]||(e[34]=i()),o(t,{type:"info",class:"jlObjectType jlMethod",text:"Method"})]),e[35]||(e[35]=a('
julia
sample

Sample from geom. This is highest level dispatch which assumes nothing about the geometry the user is trying to apply BONSampler to.

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',3))])])}const L=r(p,[["render",B]]);export{P as __pageData,L as default}; diff --git a/previews/PR72/assets/index.md.lk_Ec6CF.lean.js b/previews/PR72/assets/index.md.lk_Ec6CF.lean.js deleted file mode 100644 index 96f6bbe..0000000 --- a/previews/PR72/assets/index.md.lk_Ec6CF.lean.js +++ /dev/null @@ -1 +0,0 @@ -import{_ as r,c as l,j as s,a as i,G as o,a5 as a,B as n,o as d}from"./chunks/framework.CuKCF6Tm.js";const P=JSON.parse('{"title":"BiodiversityObservationNetworks.jl","description":"","frontmatter":{},"headers":[],"relativePath":"index.md","filePath":"index.md","lastUpdated":null}'),p={name:"index.md"},b={class:"jldocstring custom-block",open:""},v={class:"jldocstring custom-block",open:""},c={class:"jldocstring custom-block",open:""},y={class:"jldocstring custom-block",open:""},k={class:"jldocstring custom-block",open:""},u={class:"jldocstring custom-block",open:""},g={class:"jldocstring custom-block",open:""},h={class:"jldocstring custom-block",open:""},m={class:"jldocstring custom-block",open:""},j={class:"jldocstring custom-block",open:""},N={class:"jldocstring custom-block",open:""},O={class:"jldocstring custom-block",open:""};function B(w,e,f,T,x,S){const t=n("Badge");return d(),l("div",null,[e[36]||(e[36]=s("h1",{id:"biodiversityobservationnetworks-jl",tabindex:"-1"},[i("BiodiversityObservationNetworks.jl "),s("a",{class:"header-anchor",href:"#biodiversityobservationnetworks-jl","aria-label":'Permalink to "BiodiversityObservationNetworks.jl"'},"​")],-1)),e[37]||(e[37]=s("p",null,"The purpose of this package is to provide a high-level, extensible, modular interface to the selection of sampling point for biodiversity processes in space. It is based around a collection of types representing point selection algorithms, used to select the most informative sampling points based on raster data.",-1)),e[38]||(e[38]=s("div",{class:"warning custom-block"},[s("p",{class:"custom-block-title"},"This package is in development"),s("p",null,[i("The "),s("code",null,"BiodiversityObservationNetworks.jl"),i(" package is currently under development. The API is not expected to change a lot, but it may change in order to facilitate the integration of new features.")])],-1)),s("details",b,[s("summary",null,[e[0]||(e[0]=s("a",{id:"BiodiversityObservationNetworks.BONSampler",href:"#BiodiversityObservationNetworks.BONSampler"},[s("span",{class:"jlbinding"},"BiodiversityObservationNetworks.BONSampler")],-1)),e[1]||(e[1]=i()),o(t,{type:"info",class:"jlObjectType jlType",text:"Type"})]),e[2]||(e[2]=a('
julia
BONSampler

An abstract type that is the supertype for all methods for sampling BiodiversityObservationNetworks.

source

',3))]),s("details",v,[s("summary",null,[e[3]||(e[3]=s("a",{id:"BiodiversityObservationNetworks.BiodiversityObservationNetwork",href:"#BiodiversityObservationNetworks.BiodiversityObservationNetwork"},[s("span",{class:"jlbinding"},"BiodiversityObservationNetworks.BiodiversityObservationNetwork")],-1)),e[4]||(e[4]=i()),o(t,{type:"info",class:"jlObjectType jlType",text:"Type"})]),e[5]||(e[5]=a('
julia
BiodiversityObservationNetwork

A set of Nodes that together create a sampling design for monitoring biodiversity.

BiodiversityObservationNetwork extends the GeoInterface MultiPointTrait type.

source

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julia
Grid

Grid is a type of BONSampler for generating BiodiversityObservationNetworks with Nodes structured as a systematic grid over the study area.

Arguments:

  • longitude_spacing

  • latitude_spacing

source

',5))]),s("details",y,[s("summary",null,[e[9]||(e[9]=s("a",{id:"BiodiversityObservationNetworks.KMeans",href:"#BiodiversityObservationNetworks.KMeans"},[s("span",{class:"jlbinding"},"BiodiversityObservationNetworks.KMeans")],-1)),e[10]||(e[10]=i()),o(t,{type:"info",class:"jlObjectType jlType",text:"Type"})]),e[11]||(e[11]=a('
julia
KMeans

KMeans is a BONSampler that generates BiodiversityObservationNetworks that aim to be representative of the distribution of environmental variables across an extent represented as a RasterStack.

Arguments:

  • k: the number of sampling sites

source

',5))]),s("details",k,[s("summary",null,[e[12]||(e[12]=s("a",{id:"BiodiversityObservationNetworks.Node",href:"#BiodiversityObservationNetworks.Node"},[s("span",{class:"jlbinding"},"BiodiversityObservationNetworks.Node")],-1)),e[13]||(e[13]=i()),o(t,{type:"info",class:"jlObjectType jlType",text:"Type"})]),e[14]||(e[14]=a('
julia
Node

A single sampling location within a BiodiversityObservationNetwork, represented as a coordinate.

A Node extends the GeoInterface PointTrait type.

source

',4))]),s("details",u,[s("summary",null,[e[15]||(e[15]=s("a",{id:"BiodiversityObservationNetworks.Polygon",href:"#BiodiversityObservationNetworks.Polygon"},[s("span",{class:"jlbinding"},"BiodiversityObservationNetworks.Polygon")],-1)),e[16]||(e[16]=i()),o(t,{type:"info",class:"jlObjectType jlType",text:"Type"})]),e[17]||(e[17]=a('
julia
Polygon

A Polygon extends the GeoInterface API for both PolygonTrait and MultiPolygonTraits.

source

',3))]),s("details",g,[s("summary",null,[e[18]||(e[18]=s("a",{id:"BiodiversityObservationNetworks.Raster",href:"#BiodiversityObservationNetworks.Raster"},[s("span",{class:"jlbinding"},"BiodiversityObservationNetworks.Raster")],-1)),e[19]||(e[19]=i()),o(t,{type:"info",class:"jlObjectType jlType",text:"Type"})]),e[20]||(e[20]=a('
julia
Raster

A Raster stores gridded data. The internal representation of this data can be an SDMLayer (from SimpleSDMLayers.jl) or a Matrix.

Raster extends the RasterTrait type from GeoInterface.

source

',4))]),s("details",h,[s("summary",null,[e[21]||(e[21]=s("a",{id:"BiodiversityObservationNetworks.RasterStack",href:"#BiodiversityObservationNetworks.RasterStack"},[s("span",{class:"jlbinding"},"BiodiversityObservationNetworks.RasterStack")],-1)),e[22]||(e[22]=i()),o(t,{type:"info",class:"jlObjectType jlType",text:"Type"})]),e[23]||(e[23]=a('
julia
RasterStack

A RasterStack is a set of Rasters, which all have the same resolution and extent, for storing multiple raster-like environmental variables

source

',3))]),s("details",m,[s("summary",null,[e[24]||(e[24]=s("a",{id:"BiodiversityObservationNetworks.SimpleRandom",href:"#BiodiversityObservationNetworks.SimpleRandom"},[s("span",{class:"jlbinding"},"BiodiversityObservationNetworks.SimpleRandom")],-1)),e[25]||(e[25]=i()),o(t,{type:"info",class:"jlObjectType jlType",text:"Type"})]),e[26]||(e[26]=a('
julia
SimpleRandom

SimpleRandom is a BONSampler for sampling BiodiversityObservationNetworks where each location in the spatial extent has the same probability of inclusion.

source

',3))]),s("details",j,[s("summary",null,[e[27]||(e[27]=s("a",{id:"BiodiversityObservationNetworks.SpatiallyStratified",href:"#BiodiversityObservationNetworks.SpatiallyStratified"},[s("span",{class:"jlbinding"},"BiodiversityObservationNetworks.SpatiallyStratified")],-1)),e[28]||(e[28]=i()),o(t,{type:"info",class:"jlObjectType jlType",text:"Type"})]),e[29]||(e[29]=a('
julia
SpatiallyStratified

SpatiallyStratified is a BONSampler for choosing sites across a set of different spatial stratum.

source

',3))]),s("details",N,[s("summary",null,[e[30]||(e[30]=s("a",{id:"BiodiversityObservationNetworks.sample-Tuple{BONSampler, Union{BiodiversityObservationNetwork, Polygon, Raster, RasterStack, Vector{<:Polygon}}}",href:"#BiodiversityObservationNetworks.sample-Tuple{BONSampler, Union{BiodiversityObservationNetwork, Polygon, Raster, RasterStack, Vector{<:Polygon}}}"},[s("span",{class:"jlbinding"},"BiodiversityObservationNetworks.sample")],-1)),e[31]||(e[31]=i()),o(t,{type:"info",class:"jlObjectType jlMethod",text:"Method"})]),e[32]||(e[32]=a('
julia
sample

Attempt to use BONSampler to sample from a valid geom

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',3))]),s("details",O,[s("summary",null,[e[33]||(e[33]=s("a",{id:"BiodiversityObservationNetworks.sample-Union{Tuple{T}, Tuple{BONSampler, T}} where T",href:"#BiodiversityObservationNetworks.sample-Union{Tuple{T}, Tuple{BONSampler, T}} where T"},[s("span",{class:"jlbinding"},"BiodiversityObservationNetworks.sample")],-1)),e[34]||(e[34]=i()),o(t,{type:"info",class:"jlObjectType jlMethod",text:"Method"})]),e[35]||(e[35]=a('
julia
sample

Sample from geom. This is highest level dispatch which assumes nothing about the geometry the user is trying to apply BONSampler to.

source

',3))])])}const L=r(p,[["render",B]]);export{P as __pageData,L as default}; diff --git a/previews/PR72/bibliography.html b/previews/PR72/bibliography.html index 33292d8..ae0355e 100644 --- a/previews/PR72/bibliography.html +++ b/previews/PR72/bibliography.html @@ -9,9 +9,9 @@ - + - + @@ -19,7 +19,7 @@
BiodiversityObservationNetworks.jl

Appearance

References ​

Bibliography ​

- + \ No newline at end of file diff --git a/previews/PR72/hashmap.json b/previews/PR72/hashmap.json index 75c3a91..db4c1ed 100644 --- a/previews/PR72/hashmap.json +++ b/previews/PR72/hashmap.json @@ -1 +1 @@ -{"bibliography.md":"lp9eY1zx","index.md":"lk_Ec6CF"} +{"bibliography.md":"lp9eY1zx","index.md":"DN7NZc_s"} diff --git a/previews/PR72/index.html b/previews/PR72/index.html index 0d44a01..7ead217 100644 --- a/previews/PR72/index.html +++ b/previews/PR72/index.html @@ -9,17 +9,17 @@ - + - + - + -
BiodiversityObservationNetworks.jl

Appearance

BiodiversityObservationNetworks.jl ​

The purpose of this package is to provide a high-level, extensible, modular interface to the selection of sampling point for biodiversity processes in space. It is based around a collection of types representing point selection algorithms, used to select the most informative sampling points based on raster data.

This package is in development

The BiodiversityObservationNetworks.jl package is currently under development. The API is not expected to change a lot, but it may change in order to facilitate the integration of new features.

BiodiversityObservationNetworks.BONSampler Type
julia
BONSampler

An abstract type that is the supertype for all methods for sampling BiodiversityObservationNetworks.

source

BiodiversityObservationNetworks.BiodiversityObservationNetwork Type
julia
BiodiversityObservationNetwork

A set of Nodes that together create a sampling design for monitoring biodiversity.

BiodiversityObservationNetwork extends the GeoInterface MultiPointTrait type.

source

BiodiversityObservationNetworks.Grid Type
julia
Grid

Grid is a type of BONSampler for generating BiodiversityObservationNetworks with Nodes structured as a systematic grid over the study area.

Arguments:

  • longitude_spacing

  • latitude_spacing

source

BiodiversityObservationNetworks.KMeans Type
julia
KMeans

KMeans is a BONSampler that generates BiodiversityObservationNetworks that aim to be representative of the distribution of environmental variables across an extent represented as a RasterStack.

Arguments:

  • k: the number of sampling sites

source

BiodiversityObservationNetworks.Node Type
julia
Node

A single sampling location within a BiodiversityObservationNetwork, represented as a coordinate.

A Node extends the GeoInterface PointTrait type.

source

BiodiversityObservationNetworks.Polygon Type
julia
Polygon

A Polygon extends the GeoInterface API for both PolygonTrait and MultiPolygonTraits.

source

BiodiversityObservationNetworks.Raster Type
julia
Raster

A Raster stores gridded data. The internal representation of this data can be an SDMLayer (from SimpleSDMLayers.jl) or a Matrix.

Raster extends the RasterTrait type from GeoInterface.

source

BiodiversityObservationNetworks.RasterStack Type
julia
RasterStack

A RasterStack is a set of Rasters, which all have the same resolution and extent, for storing multiple raster-like environmental variables

source

BiodiversityObservationNetworks.SimpleRandom Type
julia
SimpleRandom

SimpleRandom is a BONSampler for sampling BiodiversityObservationNetworks where each location in the spatial extent has the same probability of inclusion.

source

BiodiversityObservationNetworks.SpatiallyStratified Type
julia
SpatiallyStratified

SpatiallyStratified is a BONSampler for choosing sites across a set of different spatial stratum.

source

BiodiversityObservationNetworks.sample Method
julia
sample

Attempt to use BONSampler to sample from a valid geom

source

BiodiversityObservationNetworks.sample Method
julia
sample

Sample from geom. This is highest level dispatch which assumes nothing about the geometry the user is trying to apply BONSampler to.

source

- +
BiodiversityObservationNetworks.jl

Appearance

BiodiversityObservationNetworks.jl ​

The purpose of this package is to provide a high-level, extensible, modular interface to the selection of sampling point for biodiversity processes in space. It is based around a collection of types representing point selection algorithms, used to select the most informative sampling points based on raster data.

This package is in development

The BiodiversityObservationNetworks.jl package is currently under development. The API is not expected to change a lot, but it may change in order to facilitate the integration of new features.

BiodiversityObservationNetworks.BONSampler Type
julia
BONSampler

An abstract type that is the supertype for all methods for sampling BiodiversityObservationNetworks.

source

BiodiversityObservationNetworks.BalancedAcceptance Type
julia
BalancedAcceptance

BalancedAcceptance is a type of BONSampler for generating BiodiversityObservationNetworks with spatial spreading.

Arguments:

  • number_of_nodes: the number of sites to select

  • grid_size:

source

BiodiversityObservationNetworks.BiodiversityObservationNetwork Type
julia
BiodiversityObservationNetwork

A set of Nodes that together create a sampling design for monitoring biodiversity.

BiodiversityObservationNetwork extends the GeoInterface MultiPointTrait type.

source

BiodiversityObservationNetworks.Grid Type
julia
Grid

Grid is a type of BONSampler for generating BiodiversityObservationNetworks with Nodes structured as a systematic grid over the study area.

Arguments:

  • longitude_spacing

  • latitude_spacing

source

BiodiversityObservationNetworks.KMeans Type
julia
KMeans

KMeans is a BONSampler that generates BiodiversityObservationNetworks that aim to be representative of the distribution of environmental variables across an extent represented as a RasterStack.

Arguments:

  • k: the number of sampling sites

source

BiodiversityObservationNetworks.Node Type
julia
Node

A single sampling location within a BiodiversityObservationNetwork, represented as a coordinate.

A Node extends the GeoInterface PointTrait type.

source

BiodiversityObservationNetworks.Polygon Type
julia
Polygon

A Polygon extends the GeoInterface API for both PolygonTrait and MultiPolygonTraits.

source

BiodiversityObservationNetworks.Raster Type
julia
Raster

A Raster stores gridded data. The internal representation of this data can be an SDMLayer (from SimpleSDMLayers.jl) or a Matrix.

Raster extends the RasterTrait type from GeoInterface.

source

BiodiversityObservationNetworks.RasterStack Type
julia
RasterStack

A RasterStack is a set of Rasters, which all have the same resolution and extent, for storing multiple raster-like environmental variables

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BiodiversityObservationNetworks.SimpleRandom Type
julia
SimpleRandom

SimpleRandom is a BONSampler for sampling BiodiversityObservationNetworks where each location in the spatial extent has the same probability of inclusion.

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BiodiversityObservationNetworks.SpatiallyStratified Type
julia
SpatiallyStratified

SpatiallyStratified is a BONSampler for choosing sites across a set of different spatial stratum.

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BiodiversityObservationNetworks.sample Method
julia
sample

Attempt to use BONSampler to sample from a valid geom

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BiodiversityObservationNetworks.sample Method
julia
sample

Sample from geom. This is highest level dispatch which assumes nothing about the geometry the user is trying to apply BONSampler to.

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