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Updated Problem Generators (markdown)
Fix typo https://github.com/PrincetonUniversity/athena/discussions/548#discussioncomment-7664464
added reference to passive scalar source function
fixed formatting on pgen page
updated pgen description to reflect passive scalar source terms
Mention passive scalar initialization of "s"
added description of pgen for initializing from HDF5 file
Use inline code syntax and C++ highlighting for blocks
linked pgen page to arbitrary coordinates
minor fixes in User Guide
Added user-defined functions.