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fixes url; workaround to skip 1550 (#1551)
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temporarily skip the test #1550 while we are improving the premerge
runner.

### Checks
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [ ] Avoid including large-size files in the PR.
- [ ] Clean up long text outputs from code cells in the notebook.
- [ ] For security purposes, please check the contents and remove any
sensitive info such as user names and private key.
- [ ] Ensure (1) hyperlinks and markdown anchors are working (2) use
relative paths for tutorial repo files (3) put figure and graphs in the
`./figure` folder
- [ ] Notebook runs automatically `./runner.sh -t <path to .ipynb file>`

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
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wyli authored Oct 20, 2023
1 parent 80e96e9 commit 7fe6568
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2 changes: 1 addition & 1 deletion bundle/README.md
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Expand Up @@ -14,7 +14,7 @@ Start the tutorial notebooks on constructing bundles:
2. [MedNIST Classification](./02_mednist_classification.ipynb): train a network using the bundle for doing a real task.
3. [MedNIST Classification With Best Practices](./03_mednist_classification_v2.ipynb): do the same again but better.
4. [Integrating Existing Code](./04_integrating_code.ipynb): discussion on how to integrate existing, possible non-MONAI, code into a bundle.
5. [Spleen Segmentation using Pytorch Lightning](./05_spleen_segmentation.ipynb): train a segmentation network using MONAI bundle and Pytorch Lightning.
5. [Spleen Segmentation using Pytorch Lightning](./05_spleen_segmentation_lightning.ipynb): train a segmentation network using MONAI bundle and Pytorch Lightning.

More advanced topics are covered in this directory:

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1 change: 1 addition & 0 deletions runner.sh
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Expand Up @@ -124,6 +124,7 @@ skip_run_papermill=("${skip_run_papermill[@]}" .*nuclei_classification_training_
skip_run_papermill=("${skip_run_papermill[@]}" .*nuclick_training_notebook.ipynb*) # https://github.com/Project-MONAI/tutorials/issues/1542
skip_run_papermill=("${skip_run_papermill[@]}" .*nuclei_classification_infer.ipynb*) # https://github.com/Project-MONAI/tutorials/issues/1542
skip_run_papermill=("${skip_run_papermill[@]}" .*nuclick_infer.ipynb*) # https://github.com/Project-MONAI/tutorials/issues/1542
skip_run_papermill=("${skip_run_papermill[@]}" .*05_spleen_segmentation_lightning.ipynb*) # https://github.com/Project-MONAI/tutorials/issues/1550

# output formatting
separator=""
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