fix

proteobench/io/params/peaks.py

@@ -118,10 +118,11 @@ def read_peaks_settings(file_path: str) -> ProteoBenchParameters:
     # Try to read the file contents
 
     try:
-        with open(file_path) as f:
+        # Attempt to open and read the file
+        with open(file_path, encoding="utf-8") as f:
             lines = f.readlines()
-    except:
-        lines = [l for l in file_path.read().decode("utf-8").splitlines()]
+    except Exception as e:
+        raise IOError(f"Failed to open or read the file at {file_path}. Error: {e}")
 
     # Remove any trailing newline characters from each line
     lines = [line.strip() for line in lines]

proteobench/io/params/spectronaut.py

@@ -77,10 +77,11 @@ def read_spectronaut_settings(file_path: str) -> ProteoBenchParameters:
     """
     # Try to read the file contents
     try:
-        with open(file_path) as f:
+        # Attempt to open and read the file
+        with open(file_path, encoding="utf-8") as f:
             lines = f.readlines()
-    except:
-        lines = [l for l in file_path.read().decode("utf-8").splitlines()]
+    except Exception as e:
+        raise IOError(f"Failed to open or read the file at {file_path}. Error: {e}")
 
     # Remove any trailing newline characters from each line
     lines = [line.strip() for line in lines]