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Proteobench · Dec 19, 2024 · adb5095 · adb5095
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Showing 7 changed files with 25 additions and 60 deletions.
diff --git a/webinterface/pages/2_Quant_LFQ_ion_DDA.py b/webinterface/pages/2_Quant_LFQ_ion_DDA.py
@@ -57,9 +57,7 @@ def _main_page(self) -> None:
 
         with tab_results_all:
             st.title(self.variables_dda_quant.texts.ShortMessages.title)
-            st.write(
-                f"The full description of the module is available [here]({self.variables_dda_quant.texts.ShortMessages.doc_url})"
-            )
+            st.write(f"The full description of the module is available [here]({self.variables_dda_quant.doc_url})")
             if self.variables_dda_quant.beta_warning:
                 st.warning(
                     "This module is in BETA phase. The figure presented below and the metrics calculation may change in the near future."
@@ -70,9 +68,7 @@ def _main_page(self) -> None:
         with tab_submission_details:
             st.title(self.variables_dda_quant.texts.ShortMessages.title)
 
-            st.write(
-                f"The full description of the module is available [here]({self.variables_dda_quant.texts.ShortMessages.doc_url})"
-            )
+            st.write(f"The full description of the module is available [here]({self.variables_dda_quant.doc_url})")
             if self.variables_dda_quant.beta_warning:
                 st.warning(
                     "This module is in BETA phase. The figure presented below and the metrics calculation may change in the near future."
@@ -83,9 +79,7 @@ def _main_page(self) -> None:
         with tab_indepth_plots:
             st.title(self.variables_dda_quant.texts.ShortMessages.title)
 
-            st.write(
-                f"The full description of the module is available [here]({self.variables_dda_quant.texts.ShortMessages.doc_url})"
-            )
+            st.write(f"The full description of the module is available [here]({self.variables_dda_quant.doc_url})")
             if self.variables_dda_quant.beta_warning:
                 st.warning(
                     "This module is in BETA phase. The figure presented below and the metrics calculation may change in the near future."
@@ -95,9 +89,7 @@ def _main_page(self) -> None:
         # Tab 3: Results (New Submissions)
         with tab_results_new:
             st.title(self.variables_dda_quant.texts.ShortMessages.title)
-            st.write(
-                f"The full description of the module is available [here]({self.variables_dda_quant.texts.ShortMessages.doc_url})"
-            )
+            st.write(f"The full description of the module is available [here]({self.variables_dda_quant.doc_url})")
             if self.variables_dda_quant.beta_warning:
                 st.warning(
                     "This module is in BETA phase. The figure presented below and the metrics calculation may change in the near future."
@@ -108,9 +100,7 @@ def _main_page(self) -> None:
         # Tab 4: Public Submission
         with tab_public_submission:
             st.title(self.variables_dda_quant.texts.ShortMessages.title)
-            st.write(
-                f"The full description of the module is available [here]({self.variables_dda_quant.texts.ShortMessages.doc_url})"
-            )
+            st.write(f"The full description of the module is available [here]({self.variables_dda_quant.doc_url})")
             if self.variables_dda_quant.beta_warning:
                 st.warning(
                     "This module is in BETA phase. The figure presented below and the metrics calculation may change in the near future."

diff --git a/webinterface/pages/3_Quant_LFQ_ion_DIA_AIF.py b/webinterface/pages/3_Quant_LFQ_ion_DIA_AIF.py
@@ -61,9 +61,7 @@ def _main_page(self) -> None:
         # Tab 1: Results (All Data)
         with tab_results_all:
             st.title(self.variables_dia_quant.texts.ShortMessages.title)
-            st.write(
-                f"The full description of the module is available [here]({self.variables_dia_quant.texts.ShortMessages.doc_url})"
-            )
+            st.write(f"The full description of the module is available [here]({self.variables_dia_quant.doc_url})")
             if self.variables_dia_quant.beta_warning:
                 st.warning(
                     "This module is in BETA phase. The figure presented below and the metrics calculation may change in the near future."
@@ -73,9 +71,7 @@ def _main_page(self) -> None:
         # Tab 2: Submission Details
         with tab_submission_details:
             st.title(self.variables_dia_quant.texts.ShortMessages.title)
-            st.write(
-                f"The full description of the module is available [here]({self.variables_dia_quant.texts.ShortMessages.doc_url})"
-            )
+            st.write(f"The full description of the module is available [here]({self.variables_dia_quant.doc_url})")
             if self.variables_dia_quant.beta_warning:
                 st.warning(
                     "This module is in BETA phase. The figure presented below and the metrics calculation may change in the near future."
@@ -85,9 +81,7 @@ def _main_page(self) -> None:
         # Tab 2.5: in-depth plots current data
         with tab_indepth_plots:
             st.title(self.variables_dia_quant.texts.ShortMessages.title)
-            st.write(
-                f"The full description of the module is available [here]({self.variables_dia_quant.texts.ShortMessages.doc_url})"
-            )
+            st.write(f"The full description of the module is available [here]({self.variables_dia_quant.doc_url})")
             if self.variables_dia_quant.beta_warning:
                 st.warning(
                     "This module is in BETA phase. The figure presented below and the metrics calculation may change in the near future."
@@ -97,9 +91,7 @@ def _main_page(self) -> None:
         # Tab 3: Results (New Submissions)
         with tab_results_new:
             st.title(self.variables_dia_quant.texts.ShortMessages.title)
-            st.write(
-                f"The full description of the module is available [here]({self.variables_dia_quant.texts.ShortMessages.doc_url})"
-            )
+            st.write(f"The full description of the module is available [here]({self.variables_dia_quant.doc_url})")
             if self.variables_dia_quant.beta_warning:
                 st.warning(
                     "This module is in BETA phase. The figure presented below and the metrics calculation may change in the near future."
@@ -109,9 +101,7 @@ def _main_page(self) -> None:
         # Tab 4: Public Submission
         with tab_public_submission:
             st.title(self.variables_dia_quant.texts.ShortMessages.title)
-            st.write(
-                f"The full description of the module is available [here]({self.variables_dia_quant.texts.ShortMessages.doc_url})"
-            )
+            st.write(f"The full description of the module is available [here]({self.variables_dia_quant.doc_url})")
             if self.variables_dia_quant.beta_warning:
                 st.warning(
                     "This module is in BETA phase. The figure presented below and the metrics calculation may change in the near future."

diff --git a/webinterface/pages/4_Quant_LFQ_ion_DIA_diaPASEF.py b/webinterface/pages/4_Quant_LFQ_ion_DIA_diaPASEF.py
@@ -63,9 +63,7 @@ def _main_page(self) -> None:
         # Tab 1: Results (All Data)
         with tab_results_all:
             st.title(self.variables_dia_quant.texts.ShortMessages.title)
-            st.write(
-                f"The full description of the module is available [here]({self.variables_dia_quant.texts.ShortMessages.doc_url})"
-            )
+            st.write(f"The full description of the module is available [here]({self.variables_dia_quant.doc_url})")
             if self.variables_dia_quant.beta_warning:
                 st.warning(
                     "This module is in BETA phase. The figure presented below and the metrics calculation may change in the near future."
@@ -75,9 +73,7 @@ def _main_page(self) -> None:
         # Tab 2: Submission Details
         with tab_submission_details:
             st.title(self.variables_dia_quant.texts.ShortMessages.title)
-            st.write(
-                f"The full description of the module is available [here]({self.variables_dia_quant.texts.ShortMessages.doc_url})"
-            )
+            st.write(f"The full description of the module is available [here]({self.variables_dia_quant.doc_url})")
             if self.variables_dia_quant.beta_warning:
                 st.warning(
                     "This module is in BETA phase. The figure presented below and the metrics calculation may change in the near future."
@@ -87,9 +83,7 @@ def _main_page(self) -> None:
         # Tab 2.5: in-depth plots current data
         with tab_indepth_plots:
             st.title(self.variables_dia_quant.texts.ShortMessages.title)
-            st.write(
-                f"The full description of the module is available [here]({self.variables_dia_quant.texts.ShortMessages.doc_url})"
-            )
+            st.write(f"The full description of the module is available [here]({self.variables_dia_quant.doc_url})")
             if self.variables_dia_quant.beta_warning:
                 st.warning(
                     "This module is in BETA phase. The figure presented below and the metrics calculation may change in the near future."
@@ -99,9 +93,7 @@ def _main_page(self) -> None:
         # Tab 3: Results (New Submissions)
         with tab_results_new:
             st.title(self.variables_dia_quant.texts.ShortMessages.title)
-            st.write(
-                f"The full description of the module is available [here]({self.variables_dia_quant.texts.ShortMessages.doc_url})"
-            )
+            st.write(f"The full description of the module is available [here]({self.variables_dia_quant.doc_url})")
             if self.variables_dia_quant.beta_warning:
                 st.warning(
                     "This module is in BETA phase. The figure presented below and the metrics calculation may change in the near future."
@@ -111,9 +103,7 @@ def _main_page(self) -> None:
         # Tab 4: Public Submission
         with tab_public_submission:
             st.title(self.variables_dia_quant.texts.ShortMessages.title)
-            st.write(
-                f"The full description of the module is available [here]({self.variables_dia_quant.texts.ShortMessages.doc_url})"
-            )
+            st.write(f"The full description of the module is available [here]({self.variables_dia_quant.doc_url})")
             if self.variables_dia_quant.beta_warning:
                 st.warning(
                     "This module is in BETA phase. The figure presented below and the metrics calculation may change in the near future."

diff --git a/webinterface/pages/5_Quant_LFQ_peptidoform_DDA.py b/webinterface/pages/5_Quant_LFQ_peptidoform_DDA.py
@@ -67,9 +67,7 @@ def _main_page(self) -> None:
 
         with tab_results_all:
             st.title(self.variables_dda_quant.texts.ShortMessages.title)
-            st.write(
-                f"The full description of the module is available [here]({self.variables_dda_quant.texts.ShortMessages.doc_url})"
-            )
+            st.write(f"The full description of the module is available [here]({self.variables_dda_quant.doc_url})")
             if self.variables_dda_quant.beta_warning:
                 st.warning(
                     "This module is in BETA phase. The figure presented below and the metrics calculation may change in the near future."
@@ -79,9 +77,7 @@ def _main_page(self) -> None:
         # Tab 2: Submission Details
         with tab_submission_details:
             st.title(self.variables_dda_quant.texts.ShortMessages.title)
-            st.write(
-                f"The full description of the module is available [here]({self.variables_dda_quant.texts.ShortMessages.doc_url})"
-            )
+            st.write(f"The full description of the module is available [here]({self.variables_dda_quant.doc_url})")
             if self.variables_dda_quant.beta_warning:
                 st.warning(
                     "This module is in BETA phase. The figure presented below and the metrics calculation may change in the near future."
@@ -91,9 +87,7 @@ def _main_page(self) -> None:
         # Tab 2.5: in-depth plots current data
         with tab_indepth_plots:
             st.title(self.variables_dda_quant.texts.ShortMessages.title)
-            st.write(
-                f"The full description of the module is available [here]({self.variables_dda_quant.texts.ShortMessages.doc_url})"
-            )
+            st.write(f"The full description of the module is available [here]({self.variables_dda_quant.doc_url})")
             if self.variables_dda_quant.beta_warning:
                 st.warning(
                     "This module is in BETA phase. The figure presented below and the metrics calculation may change in the near future."
@@ -103,9 +97,7 @@ def _main_page(self) -> None:
         # Tab 3: Results (New Submissions)
         with tab_results_new:
             st.title(self.variables_dda_quant.texts.ShortMessages.title)
-            st.write(
-                f"The full description of the module is available [here]({self.variables_dda_quant.texts.ShortMessages.doc_url})"
-            )
+            st.write(f"The full description of the module is available [here]({self.variables_dda_quant.doc_url})")
             if self.variables_dda_quant.beta_warning:
                 st.warning(
                     "This module is in BETA phase. The figure presented below and the metrics calculation may change in the near future."
@@ -116,9 +108,7 @@ def _main_page(self) -> None:
         # Tab 4: Public Submission
         with tab_public_submission:
             st.title(self.variables_dda_quant.texts.ShortMessages.title)
-            st.write(
-                f"The full description of the module is available [here]({self.variables_dda_quant.texts.ShortMessages.doc_url})"
-            )
+            st.write(f"The full description of the module is available [here]({self.variables_dda_quant.doc_url})")
             if self.variables_dda_quant.beta_warning:
                 st.warning(
                     "This module is in BETA phase. The figure presented below and the metrics calculation may change in the near future."

diff --git a/webinterface/pages/pages_variables/Quant/lfq/ion/DDA/variables.py b/webinterface/pages/pages_variables/Quant/lfq/ion/DDA/variables.py
@@ -60,3 +60,4 @@ class VariablesDDAQuant:
     parse_settings_dir: str = "../proteobench/io/parsing/io_parse_settings/Quant/DDA"
 
     texts: Type[WebpageTexts] = WebpageTexts
+    doc_url: str = "https://proteobench.readthedocs.io/en/latest/available-modules/2-quant-lfq-ion-dda/"
diff --git a/webinterface/pages/pages_variables/Quant/lfq/ion/DIA/ion_diaPASEF.py b/webinterface/pages/pages_variables/Quant/lfq/ion/DIA/ion_diaPASEF.py
@@ -61,3 +61,5 @@ class VariablesDIAQuantdiaPASEF:
     parse_settings_dir: str = "../proteobench/io/parsing/io_parse_settings/Quant/lfq/ion/DIA/diaPASEF"
 
     texts: Type[WebpageTexts] = WebpageTexts
+
+    doc_url: str = "https://proteobench.readthedocs.io/en/latest/available-modules/5-quant-lfq-ion-dia-diapasef/"
diff --git a/webinterface/pages/pages_variables/Quant/lfq/peptidoform/DDA/peptidoform_variables.py b/webinterface/pages/pages_variables/Quant/lfq/peptidoform/DDA/peptidoform_variables.py
@@ -60,3 +60,5 @@ class VariablesDDAQuant:
     parse_settings_dir: str = "../proteobench/io/parsing/io_parse_settings/Quant/lfq/peptidoform/DDA"
 
     texts: Type[WebpageTexts] = WebpageTexts
+
+    doc_url: str = "https://proteobench.readthedocs.io/en/latest/available-modules/3-quant-lfq-peptidoform-dda/"
Original file line number	Diff line number	Diff line change
Expand Up		@@ -60,3 +60,4 @@ class VariablesDDAQuant:
		parse_settings_dir: str = "../proteobench/io/parsing/io_parse_settings/Quant/DDA"

		texts: Type[WebpageTexts] = WebpageTexts
		doc_url: str = "https://proteobench.readthedocs.io/en/latest/available-modules/2-quant-lfq-ion-dda/"
Original file line number	Diff line number	Diff line change
Expand Up		@@ -61,3 +61,5 @@ class VariablesDIAQuantdiaPASEF:
		parse_settings_dir: str = "../proteobench/io/parsing/io_parse_settings/Quant/lfq/ion/DIA/diaPASEF"

		texts: Type[WebpageTexts] = WebpageTexts

		doc_url: str = "https://proteobench.readthedocs.io/en/latest/available-modules/5-quant-lfq-ion-dia-diapasef/"
Original file line number	Diff line number	Diff line change
Expand Up		@@ -60,3 +60,5 @@ class VariablesDDAQuant:
		parse_settings_dir: str = "../proteobench/io/parsing/io_parse_settings/Quant/lfq/peptidoform/DDA"

		texts: Type[WebpageTexts] = WebpageTexts

		doc_url: str = "https://proteobench.readthedocs.io/en/latest/available-modules/3-quant-lfq-peptidoform-dda/"