diff --git a/.github/workflows/cache.yml b/.github/workflows/cache.yml index 8446fc4b..67bdcd61 100644 --- a/.github/workflows/cache.yml +++ b/.github/workflows/cache.yml @@ -37,7 +37,7 @@ jobs: - name: Set up Julia uses: julia-actions/setup-julia@v1 with: - version: 1.9 + version: 1.10.0 - name: Install IJulia and Setup Project shell: bash run: | diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index c500be5e..66e57904 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -32,7 +32,7 @@ jobs: - name: Set up Julia uses: julia-actions/setup-julia@v1 with: - version: 1.9 + version: 1.10.0 - name: Install IJulia and Setup Project shell: bash run: | diff --git a/.github/workflows/format.yml b/.github/workflows/format.yml index df510876..30f3087e 100644 --- a/.github/workflows/format.yml +++ b/.github/workflows/format.yml @@ -17,7 +17,7 @@ jobs: - name: Setup Julia uses: julia-actions/setup-julia@v1 with: - version: 1.9 + version: 1.10.0 - name: Install JuliaFormatter.jl run: julia -e 'import Pkg; Pkg.add("JuliaFormatter")' diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml index 89d80144..dad8ec55 100644 --- a/.github/workflows/publish.yml +++ b/.github/workflows/publish.yml @@ -35,7 +35,7 @@ jobs: - name: Set up Julia uses: julia-actions/setup-julia@v1 with: - version: 1.9 + version: 1.10.0 - name: Install IJulia and Setup Project shell: bash run: | diff --git a/.gitignore b/.gitignore index e00f5c0b..b23096d0 100644 --- a/.gitignore +++ b/.gitignore @@ -1,2 +1,4 @@ _build -us_cities.txt \ No newline at end of file +us_cities.txt +.DS_Store +.vscode diff --git a/README.md b/README.md index fe71ad3d..bf018b82 100644 --- a/README.md +++ b/README.md @@ -26,7 +26,7 @@ It is straightforward to install the Jupyter Book and Julia software necessary f 7. Start a VS Code terminal with ```` or through any other method. Create a conda environment. ```bash - conda create -n lecture-julia.myst python=3.9 + conda create -n lecture-julia.myst python=3.11 conda activate lecture-julia.myst pip install -r requirements.txt ``` @@ -62,13 +62,9 @@ As a helper, you can call a shell script to do it for an entire folder bash format_all_directory.sh lectures/dynamic_programming ``` or to also do the unicode substitutions -```bash bash format_all_directory.sh lectures/dynamic_programming true ``` -Alternatively, the formatter will run automatically when a pull-request is made - - **(Optional) REPL Integration** With [MyST-Markdown](https://github.com/executablebooks/myst-vs-code) and [Julia](https://marketplace.visualstudio.com/items?itemName=julialang.language-julia) installed, you can ensure that pressing `` on lines of code are sent to a Julia REPL. 1. Open Key Bindings with ``. @@ -84,6 +80,7 @@ If you installed the REPL Integration above, then in a `.md` file, 3. Then, assuming that you set up the keybindings above, you can send a line of code in the markdown to the REPL with ``. Code can be executed line by line, or you can select a chunk of code and execute it. + ## Example Operations ### Building the lectures To do a full build of the lectures: @@ -100,7 +97,7 @@ jb build lectures This will take a while. But it will populate your cache, so future iteration is faster. -On Windows, if you get the following error: +It is suggested to use WSL on Windows On Windows, if you get the following error: ``` ImportError: DLL load failed while importing win32api: The specified procedure could not be found. @@ -132,5 +129,4 @@ jb clean lectures --all After execution, you can find the generated `.ipynb` and `.jl` files in `_build/jupyter_execute` for each lecture. - To see errors, you can open these in JupyterLab, the Jupyter support within VS Code, etc. -- If using the Julia REPL in VS Code, make sure to do `] activate lectures` prior to testing to ensure the packages are activated. This is not necessary when opening in Jupyter. -- Finally, the code is written using interactive scoping, so `include(_build/jupyter_execute/dynamic_programming/mccall_model.jl)` etc. may not work. However, `shift-enter` within VS Code to the REPL will work, and you can execute these with [SoftGlobalScope.jl](https://github.com/stevengj/SoftGlobalScope.jl) if strictly required. +- If using the Julia REPL in VS Code, make sure to do `] activate lectures` prior to testing to ensure the packages are activated. This is not necessary when opening in Jupyter. \ No newline at end of file diff --git a/lectures/Manifest.toml b/lectures/Manifest.toml index 05cdb251..5202eeb7 100644 --- a/lectures/Manifest.toml +++ b/lectures/Manifest.toml @@ -1,19 +1,19 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.1" +julia_version = "1.10.0" manifest_format = "2.0" -project_hash = "426ee44181a1827c854acad97427614830a3ef74" +project_hash = "bbafb0ad34fec16511b07a132895ce6672068cfe" [[deps.ADTypes]] -git-tree-sha1 = "dcfdf328328f2645531c4ddebf841228aef74130" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.1.3" +version = "0.2.6" [[deps.AMD]] -deps = ["Libdl", "LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "00163dc02b882ca5ec032400b919e5f5011dbd31" +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] +git-tree-sha1 = "45a1272e3f809d36431e57ab22703c6896b8908f" uuid = "14f7f29c-3bd6-536c-9a0b-7339e30b5a3e" -version = "0.5.0" +version = "0.5.3" [[deps.ASL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -22,20 +22,21 @@ uuid = "ae81ac8f-d209-56e5-92de-9978fef736f9" version = "0.1.3+0" [[deps.AbstractAlgebra]] -deps = ["GroupsCore", "InteractiveUtils", "LinearAlgebra", "MacroTools", "Markdown", "Random", "RandomExtensions", "SparseArrays", "Test"] -git-tree-sha1 = "29e65c331f97db9189ef00a4c7aed8127c2fd2d4" +deps = ["GroupsCore", "InteractiveUtils", "LinearAlgebra", "MacroTools", "Preferences", "Random", "RandomExtensions", "SparseArrays", "Test"] +git-tree-sha1 = "d7832de8cf7af26abac741f10372080ac6cb73df" uuid = "c3fe647b-3220-5bb0-a1ea-a7954cac585d" -version = "0.27.10" +version = "0.34.7" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] -git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.3.1" -weakdeps = ["ChainRulesCore"] +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] [deps.AbstractFFTs.extensions] AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" [[deps.AbstractTrees]] git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" @@ -44,9 +45,9 @@ version = "0.4.4" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "cde29ddf7e5726c9fb511f340244ea3481267608" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.2" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -82,9 +83,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "d3f758863a47ceef2248d136657cb9c033603641" +git-tree-sha1 = "bbec08a37f8722786d87bedf84eae19c020c4efa" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.8" +version = "7.7.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -102,27 +103,19 @@ version = "7.4.8" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -[[deps.ArrayInterfaceCore]] -deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d" -uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" -version = "0.1.29" - [[deps.ArrayLayouts]] -deps = ["FillArrays", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "4aff5fa660eb95c2e0deb6bcdabe4d9a96bc4667" +deps = ["FillArrays", "LinearAlgebra"] +git-tree-sha1 = "b08a4043e1c14096ef8efe4dd97e07de5cacf240" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "0.8.18" +version = "1.4.5" +weakdeps = ["SparseArrays"] + + [deps.ArrayLayouts.extensions] + ArrayLayoutsSparseArraysExt = "SparseArrays" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" @@ -130,29 +123,33 @@ uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" version = "1.0.1" [[deps.BandedMatrices]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "SnoopPrecompile", "SparseArrays"] -git-tree-sha1 = "6ef8fc1d77b60f41041d59ce61ef9eb41ed97a83" +deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] +git-tree-sha1 = "27baf04c642465b4289179f29bb7127f0673d4f1" uuid = "aae01518-5342-5314-be14-df237901396f" -version = "0.17.18" +version = "1.4.0" +weakdeps = ["SparseArrays"] + + [deps.BandedMatrices.extensions] + BandedMatricesSparseArraysExt = "SparseArrays" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" [[deps.BenchmarkTools]] deps = ["JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] -git-tree-sha1 = "d9a9701b899b30332bbcb3e1679c41cce81fb0e8" +git-tree-sha1 = "f1f03a9fa24271160ed7e73051fba3c1a759b53f" uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" -version = "1.3.2" +version = "1.4.0" [[deps.Bijections]] -git-tree-sha1 = "fe4f8c5ee7f76f2198d5c2a06d3961c249cce7bd" +git-tree-sha1 = "c9b163bd832e023571e86d0b90d9de92a9879088" uuid = "e2ed5e7c-b2de-5872-ae92-c73ca462fb04" -version = "0.1.4" +version = "0.1.6" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.BitTwiddlingConvenienceFunctions]] deps = ["Static"] @@ -160,51 +157,23 @@ git-tree-sha1 = "0c5f81f47bbbcf4aea7b2959135713459170798b" uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" version = "0.1.5" -[[deps.BlackBoxOptim]] -deps = ["CPUTime", "Compat", "Distributed", "Distributions", "HTTP", "JSON", "LinearAlgebra", "Printf", "Random", "SpatialIndexing", "StatsBase"] -git-tree-sha1 = "136079f37e3514ec691926093924b591a8842f5d" -uuid = "a134a8b2-14d6-55f6-9291-3336d3ab0209" -version = "0.6.2" - -[[deps.BlockArrays]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] -git-tree-sha1 = "3b15c61bcece7c426ea641d143c808ace3661973" -uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" -version = "0.16.25" - -[[deps.BlockBandedMatrices]] -deps = ["ArrayLayouts", "BandedMatrices", "BlockArrays", "FillArrays", "LinearAlgebra", "MatrixFactorizations", "SparseArrays", "Statistics"] -git-tree-sha1 = "f389a2752664c4103f9c481b4766d7eed78ad85b" -uuid = "ffab5731-97b5-5995-9138-79e8c1846df0" -version = "0.11.10" - [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" version = "1.0.8+0" -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - [[deps.CPUSummary]] deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] -git-tree-sha1 = "89e0654ed8c7aebad6d5ad235d6242c2d737a928" +git-tree-sha1 = "601f7e7b3d36f18790e2caf83a882d88e9b71ff1" uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" -version = "0.2.3" - -[[deps.CPUTime]] -git-tree-sha1 = "2dcc50ea6a0a1ef6440d6eecd0fe3813e5671f45" -uuid = "a9c8d775-2e2e-55fc-8582-045d282d599e" -version = "1.0.0" +version = "0.2.4" [[deps.CSV]] deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] -git-tree-sha1 = "44dbf560808d49041989b8a96cae4cffbeb7966a" +git-tree-sha1 = "679e69c611fff422038e9e21e270c4197d49d918" uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.11" +version = "0.10.12" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -241,17 +210,15 @@ git-tree-sha1 = "8c4920235f6c561e401dfe569beb8b924adad003" uuid = "8be319e6-bccf-4806-a6f7-6fae938471bc" version = "0.5.0" -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "82e2d776be8bef478792d6cba65b06b16952f8ba" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.50.0" - [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "e30f2f4e20f7f186dc36529910beaedc60cfa644" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "2118cb2765f8197b08e5958cdd17c165427425ee" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.16.0" +version = "1.19.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.CloseOpenIntervals]] deps = ["Static", "StaticArrayInterface"] @@ -261,27 +228,27 @@ version = "0.1.12" [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "a6e6ce44a1e0a781772fc795fb7343b1925e9898" +git-tree-sha1 = "407f38961ac11a6e14b2df7095a2577f7cb7cb1b" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.2" +version = "0.15.6" [[deps.CodecBzip2]] deps = ["Bzip2_jll", "Libdl", "TranscodingStreams"] -git-tree-sha1 = "2e62a725210ce3c3c2e1a3080190e7ca491f18d7" +git-tree-sha1 = "c0ae2a86b162fb5d7acc65269b469ff5b8a73594" uuid = "523fee87-0ab8-5b00-afb7-3ecf72e48cfd" -version = "0.7.2" +version = "0.8.1" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "9c209fb7536406834aa938fb149964b985de6c83" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.1" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "be6ab11021cd29f0344d5c4357b163af05a48cba" +git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.21.0" +version = "3.24.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] @@ -290,10 +257,14 @@ uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" version = "0.11.4" [[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "SpecialFunctions", "Statistics", "TensorCore"] -git-tree-sha1 = "600cc5508d66b78aae350f7accdb58763ac18589" +deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] +git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.9.10" +version = "0.10.0" +weakdeps = ["SpecialFunctions"] + + [deps.ColorVectorSpace.extensions] + SpecialFunctionsExt = "SpecialFunctions" [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] @@ -319,9 +290,9 @@ version = "0.3.0" [[deps.Compat]] deps = ["UUIDs"] -git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" +git-tree-sha1 = "886826d76ea9e72b35fcd000e535588f7b60f21d" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.1" +version = "4.10.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -330,24 +301,29 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.2+0" +version = "1.0.5+1" [[deps.CompositeTypes]] git-tree-sha1 = "02d2316b7ffceff992f3096ae48c7829a8aa0638" uuid = "b152e2b5-7a66-4b01-a709-34e65c35f657" version = "0.1.3" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "96d823b94ba8d187a6d8f0826e731195a74b90e9" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.0" +version = "2.3.0" [[deps.ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "738fec4d684a9a6ee9598a8bfee305b26831f28c" +git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.2" +version = "1.5.4" weakdeps = ["IntervalSets", "StaticArrays"] [deps.ConstructionBase.extensions] @@ -372,9 +348,9 @@ version = "4.1.1" [[deps.DSP]] deps = ["Compat", "FFTW", "IterTools", "LinearAlgebra", "Polynomials", "Random", "Reexport", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "da8b06f89fce9996443010ef92572b193f8dca1f" +git-tree-sha1 = "f7f4319567fe769debfcf7f8c03d8da1dd4e2fb0" uuid = "717857b8-e6f2-59f4-9121-6e50c889abd2" -version = "0.7.8" +version = "0.7.9" [[deps.DataAPI]] git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" @@ -382,40 +358,41 @@ uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.15.0" [[deps.DataFrames]] -deps = ["Compat", "DataAPI", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SnoopPrecompile", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "aa51303df86f8626a962fccb878430cdb0a97eee" +deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.5.0" +version = "1.6.1" [[deps.DataFramesMeta]] deps = ["Chain", "DataFrames", "MacroTools", "OrderedCollections", "Reexport"] -git-tree-sha1 = "7f13b2f9fa5fc843a06596f1cc917ed1a3d6740b" +git-tree-sha1 = "6970958074cd09727b9200685b8631b034c0eb16" uuid = "1313f7d8-7da2-5740-9ea0-a2ca25f37964" -version = "0.14.0" +version = "0.14.1" [[deps.DataInterpolations]] -deps = ["LinearAlgebra", "RecipesBase", "RecursiveArrayTools", "Reexport", "Requires"] -git-tree-sha1 = "e52a7c2388471ca6e7e6dcd68c98073f378b8967" +deps = ["LinearAlgebra", "PrettyTables", "RecipesBase", "Reexport", "Requires"] +git-tree-sha1 = "99f979d5e9b67c2aeee701c3683037ac8d75bdd6" uuid = "82cc6244-b520-54b8-b5a6-8a565e85f1d0" -version = "4.0.1" +version = "4.6.0" [deps.DataInterpolations.extensions] DataInterpolationsChainRulesCoreExt = "ChainRulesCore" - DataInterpolationsOptimExt = "Optim" + DataInterpolationsOptimExt = ["ForwardDiff", "Optim"] DataInterpolationsRegularizationToolsExt = "RegularizationTools" DataInterpolationsSymbolicsExt = "Symbolics" [deps.DataInterpolations.weakdeps] ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Optim = "429524aa-4258-5aef-a3af-852621145aeb" RegularizationTools = "29dad682-9a27-4bc3-9c72-016788665182" Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "d1fff3a548102f48987a52a2e0d114fa97d730f0" +git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.13" +version = "0.18.15" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -439,13 +416,15 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "0a7dd11dd243a1f8c71f72f2e5fd54c0bfdeaaab" +deps = ["ArrayInterface", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] +git-tree-sha1 = "53159da9fef2dd92815499e18f93b699ed54f397" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.125.1" +version = "6.145.5" [deps.DiffEqBase.extensions] + DiffEqBaseChainRulesCoreExt = "ChainRulesCore" DiffEqBaseDistributionsExt = "Distributions" + DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated" DiffEqBaseMPIExt = "MPI" DiffEqBaseMeasurementsExt = "Measurements" @@ -453,10 +432,11 @@ version = "6.125.1" DiffEqBaseReverseDiffExt = "ReverseDiff" DiffEqBaseTrackerExt = "Tracker" DiffEqBaseUnitfulExt = "Unitful" - DiffEqBaseZygoteExt = "Zygote" [deps.DiffEqBase.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" @@ -464,13 +444,12 @@ version = "6.125.1" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.DiffEqNoiseProcess]] deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "Requires", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "50f82e2a705a544af539acc6a03674a4d7eee1d8" +git-tree-sha1 = "319377c927a4aa1f491228b2ac23f3554a3497c6" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.17.1" +version = "5.20.0" [deps.DiffEqNoiseProcess.extensions] DiffEqNoiseProcessReverseDiffExt = "ReverseDiff" @@ -478,12 +457,6 @@ version = "5.17.1" [deps.DiffEqNoiseProcess.weakdeps] ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" -[[deps.DiffEqOperators]] -deps = ["BandedMatrices", "BlockBandedMatrices", "DiffEqBase", "DomainSets", "ForwardDiff", "LazyArrays", "LazyBandedMatrices", "LinearAlgebra", "LoopVectorization", "NNlib", "Requires", "RuntimeGeneratedFunctions", "SciMLBase", "SparseArrays", "SparseDiffTools", "StaticArrays", "SuiteSparse"] -git-tree-sha1 = "ef0f24d69406bf85092c843691ab2ae3b2e34b77" -uuid = "9fdde737-9c7f-55bf-ade8-46b3f136cc48" -version = "4.45.0" - [[deps.DiffResults]] deps = ["StaticArraysCore"] git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" @@ -497,28 +470,35 @@ uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" [[deps.Distances]] -deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "49eba9ad9f7ead780bfb7ee319f962c811c6d3b2" +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.8" +version = "0.10.11" +weakdeps = ["ChainRulesCore", "SparseArrays"] + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "c72970914c8a21b36bbc244e9df0ed1834a0360b" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "9242eec9b7e2e14f9952e8ea1c7e31a50501d587" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.95" +version = "0.25.104" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [deps.Distributions.weakdeps] ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DensityInterface = "b429d917-457f-4dbc-8f4c-0cc954292b1d" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.DocStringExtensions]] deps = ["LibGit2"] @@ -528,9 +508,9 @@ version = "0.9.3" [[deps.DomainSets]] deps = ["CompositeTypes", "IntervalSets", "LinearAlgebra", "Random", "StaticArrays", "Statistics"] -git-tree-sha1 = "988e2db482abeb69efc76ae8b6eba2e93805ee70" +git-tree-sha1 = "51b4b84d33ec5e0955b55ff4b748b99ce2c3faa9" uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" -version = "0.5.15" +version = "0.6.7" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] @@ -544,38 +524,56 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPolynomials]] -deps = ["DataStructures", "Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Pkg", "Reexport", "Test"] -git-tree-sha1 = "8b84876e31fa39479050e2d3395c4b3b210db8b0" +deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Pkg", "Reexport", "Test"] +git-tree-sha1 = "fea68c84ba262b121754539e6ea0546146515d4f" uuid = "7c1d4256-1411-5781-91ec-d7bc3513ac07" -version = "0.4.6" +version = "0.5.3" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" +[[deps.EnzymeCore]] +deps = ["Adapt"] +git-tree-sha1 = "2efe862de93cd87f620ad6ac9c9e3f83f1b2841b" +uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" +version = "0.6.4" + +[[deps.EpollShim_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" +uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" +version = "0.0.20230411+0" + +[[deps.ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.10" + [[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bad72f730e9e91c08d9427d5e8db95478a3c323d" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.4.8+0" +version = "2.5.0+0" [[deps.Expectations]] deps = ["Distributions", "FastGaussQuadrature", "LinearAlgebra", "SpecialFunctions"] -git-tree-sha1 = "539c415ad6693bb7792be05a3e51e010c6795d95" +git-tree-sha1 = "5b46996cf6fc4ad19d1122884c36faa62ed0a7d2" uuid = "2fe49d83-0758-5602-8f54-1f90ad0d522b" -version = "1.9.0" +version = "1.9.2" [[deps.ExponentialUtilities]] -deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "Printf", "SnoopPrecompile", "SparseArrays", "libblastrampoline_jll"] -git-tree-sha1 = "fb7dbef7d2631e2d02c49e2750f7447648b0ec9b" +deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"] +git-tree-sha1 = "602e4585bcbd5a25bc06f514724593d13ff9e862" uuid = "d4d017d3-3776-5f7e-afef-a10c40355c18" -version = "1.24.0" +version = "1.25.0" [[deps.ExprTools]] -git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.9" +version = "0.1.10" [[deps.FFMPEG]] deps = ["FFMPEG_jll"] @@ -584,16 +582,16 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "06bf20fcecd258eccf9a6ef7b99856a4dfe7b64c" +git-tree-sha1 = "ec22cbbcd01cba8f41eecd7d44aac1f23ee985e3" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.0" +version = "1.7.2" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -603,9 +601,9 @@ version = "3.3.10+0" [[deps.FastBroadcast]] deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "d1248fceea0b26493fd33e8e9e8c553270da03bd" +git-tree-sha1 = "a6e756a880fc419c8b41592010aebe6a5ce09136" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.2.5" +version = "0.2.8" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" @@ -614,15 +612,15 @@ version = "0.3.2" [[deps.FastGaussQuadrature]] deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "0f478d8bad6f52573fb7658a263af61f3d96e43a" +git-tree-sha1 = "8ef0363cffeedb7e73339b664ce6d33cc278a3c4" uuid = "442a2c76-b920-505d-bb47-c5924d526838" -version = "0.5.1" +version = "1.0.1" [[deps.FastLapackInterface]] deps = ["LinearAlgebra"] -git-tree-sha1 = "c1293a93193f0ae94be7cf338d33e162c39d8788" +git-tree-sha1 = "b12f05108e405dadcc2aff0008db7f831374e051" uuid = "29a986be-02c6-4525-aec4-84b980013641" -version = "1.2.9" +version = "2.0.0" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] @@ -632,42 +630,60 @@ version = "1.16.1" [[deps.FilePathsBase]] deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] -git-tree-sha1 = "e27c4ebe80e8699540f2d6c805cc12203b614f12" +git-tree-sha1 = "9f00e42f8d99fdde64d40c8ea5d14269a2e2c1aa" uuid = "48062228-2e41-5def-b9a4-89aafe57970f" -version = "0.9.20" +version = "0.9.21" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "7072f1e3e5a8be51d525d64f63d3ec1287ff2790" +deps = ["LinearAlgebra", "Random"] +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.11" +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] -git-tree-sha1 = "c6e4a1fbe73b31a3dea94b1da449503b8830c306" +git-tree-sha1 = "73d1214fec245096717847c62d389a5d2ac86504" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.21.1" -weakdeps = ["BandedMatrices", "BlockBandedMatrices", "StaticArrays"] +version = "2.22.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" FiniteDiffStaticArraysExt = "StaticArrays" + [deps.FiniteDiff.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + [[deps.FixedEffectModels]] -deps = ["DataFrames", "FixedEffects", "LinearAlgebra", "Printf", "Reexport", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels", "Tables", "Vcov"] -git-tree-sha1 = "0c5a7774a7c74deb05a9ff09cc62f1803bb3cfdf" +deps = ["DataFrames", "FixedEffects", "LinearAlgebra", "PrecompileTools", "Printf", "Reexport", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels", "Tables", "Vcov"] +git-tree-sha1 = "8659900a184c342a61c12508c875e9ad4a123777" uuid = "9d5cd8c9-2029-5cab-9928-427838db53e3" -version = "1.8.0" +version = "1.11.0" [[deps.FixedEffects]] -deps = ["GroupedArrays", "LinearAlgebra", "Printf", "Requires", "StatsBase"] -git-tree-sha1 = "c59a77e2f138d1253df164a233be056615f331c3" +deps = ["GroupedArrays", "LinearAlgebra", "Printf", "StatsBase"] +git-tree-sha1 = "4b5de96c36ac13f37cb7c2bfbdecd39d1b5ead5f" uuid = "c8885935-8500-56a7-9867-7708b20db0eb" -version = "2.1.2" +version = "2.3.0" + + [deps.FixedEffects.extensions] + CUDAExt = "CUDA" + MetalExt = "Metal" + + [deps.FixedEffects.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" [[deps.FixedPointNumbers]] deps = ["Statistics"] @@ -689,19 +705,19 @@ version = "0.4.2" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "00e252f4d706b3d55a8863432e742bf5717b498d" +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.35" +version = "0.10.36" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] ForwardDiffStaticArraysExt = "StaticArrays" [[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "87eb71354d8ec1a96d4a7636bd57a7347dde3ef9" +deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.10.4+0" +version = "2.13.1+0" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -725,22 +741,16 @@ deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GLM]] deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels"] -git-tree-sha1 = "97829cfda0df99ddaeaafb5b370d6cab87b7013e" +git-tree-sha1 = "273bd1cd30768a2fddfa3fd63bbc746ed7249e5f" uuid = "38e38edf-8417-5370-95a0-9cbb8c7f171a" -version = "1.8.3" - -[[deps.GPUArrays]] -deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "a3351bc577a6b49297248aadc23a4add1097c2ac" -uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "8.7.1" +version = "1.9.0" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -750,15 +760,15 @@ version = "0.1.5" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "8b8a2fd4536ece6e554168c21860b6820a8a83db" +git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.7" +version = "0.72.10" [[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "19fad9cd9ae44847fe842558a744748084a722d1" +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.7+0" +version = "0.72.10+0" [[deps.GenericSchur]] deps = ["LinearAlgebra", "Printf"] @@ -773,10 +783,10 @@ uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" version = "0.21.0+0" [[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "d3b3624125c1474292d0d8ed0f65554ac37ddb23" +deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.74.0+2" +version = "2.76.5+0" [[deps.Graphite2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -786,9 +796,9 @@ version = "1.3.14+0" [[deps.Graphs]] deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "1cf1d7dcb4bc32d7b4a5add4232db3750c27ecb4" +git-tree-sha1 = "899050ace26649433ef1af25bc17a815b3db52b7" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.8.0" +version = "1.9.0" [[deps.Grisu]] git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" @@ -796,10 +806,10 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[deps.Groebner]] -deps = ["AbstractAlgebra", "Combinatorics", "Logging", "MultivariatePolynomials", "Primes", "Random"] -git-tree-sha1 = "47f0f03eddecd7ad59c42b1dd46d5f42916aff63" +deps = ["AbstractAlgebra", "Combinatorics", "ExprTools", "Logging", "MultivariatePolynomials", "PrecompileTools", "PrettyTables", "Primes", "Printf", "Random", "SIMD", "TimerOutputs"] +git-tree-sha1 = "6b505ef15e55bdc5bb3ddbcfebdff1c9e67081e8" uuid = "0b43b601-686d-58a3-8a1c-6623616c7cd4" -version = "0.2.11" +version = "0.5.1" [[deps.GroupedArrays]] deps = ["DataAPI", "Missings"] @@ -809,15 +819,15 @@ version = "0.3.3" [[deps.GroupsCore]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9e1a5e9f3b81ad6a5c613d181664a0efc6fe6dd7" +git-tree-sha1 = "6df9cd6ee79fc59feab33f63a1b3c9e95e2461d5" uuid = "d5909c97-4eac-4ecc-a3dc-fdd0858a4120" -version = "0.4.0" +version = "0.4.2" [[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5e77dbf117412d4f164a464d610ee6050cc75272" +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "abbbb9ec3afd783a7cbd82ef01dcd088ea051398" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.9.6" +version = "1.10.1" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -827,27 +837,21 @@ version = "2.8.1+1" [[deps.HostCPUFeatures]] deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"] -git-tree-sha1 = "734fd90dd2f920a2f1921d5388dcebe805b262dc" +git-tree-sha1 = "eb8fed28f4994600e29beef49744639d985a04b2" uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0" -version = "0.1.14" +version = "0.1.16" [[deps.Hwloc_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "2982b2ec1cb2e2d04b2893e211d29e1e30f8abf4" +git-tree-sha1 = "ca0f6bf568b4bfc807e7537f081c81e35ceca114" uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" -version = "2.9.1+0" +version = "2.10.0+0" [[deps.HypergeometricFunctions]] deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "0ec02c648befc2f94156eaef13b0f38106212f3f" +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.17" - -[[deps.IRTools]] -deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "eac00994ce3229a464c2847e956d77a2c64ad3a5" -uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.10" +version = "0.3.23" [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" @@ -861,9 +865,9 @@ uuid = "40713840-3770-5561-ab4c-a76e7d0d7895" version = "0.2.1" [[deps.Inflate]] -git-tree-sha1 = "5cd07aab533df5170988219191dfad0519391428" +git-tree-sha1 = "ea8031dea4aff6bd41f1df8f2fdfb25b33626381" uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" -version = "0.1.3" +version = "0.1.4" [[deps.InlineStrings]] deps = ["Parsers"] @@ -872,15 +876,15 @@ uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" version = "1.4.0" [[deps.IntegerMathUtils]] -git-tree-sha1 = "70f65ced5129d36dbf200b07c51ea8a955294660" +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" -version = "0.1.1" +version = "0.1.2" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0cb9352ef2e01574eeebdb102948a58740dcaf83" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.1.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -893,10 +897,14 @@ uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" version = "0.14.7" [[deps.IntervalSets]] -deps = ["Dates", "Random", "Statistics"] -git-tree-sha1 = "3f91cd3f56ea48d4d2a75c2a65455c5fc74fa347" +deps = ["Dates", "Random"] +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.3" +version = "0.7.8" +weakdeps = ["Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsStatisticsExt = "Statistics" [[deps.InvertedIndices]] git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" @@ -905,15 +913,15 @@ version = "1.3.0" [[deps.Ipopt]] deps = ["Ipopt_jll", "LinearAlgebra", "MathOptInterface", "OpenBLAS32_jll", "PrecompileTools"] -git-tree-sha1 = "fdb3430a3b7b909bcb5abf9439d61450f49e3e2c" +git-tree-sha1 = "481caf9195288ec5a1968582a8bc14735575ef81" uuid = "b6b21f68-93f8-5de0-b562-5493be1d77c9" -version = "1.4.1" +version = "1.5.1" [[deps.Ipopt_jll]] deps = ["ASL_jll", "Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "MUMPS_seq_jll", "SPRAL_jll", "libblastrampoline_jll"] -git-tree-sha1 = "10aed0bc185360eef63ef34bc02d0bd7c26409d1" +git-tree-sha1 = "f06a7fd68e29c8acc96483d6f163dab58626c4b5" uuid = "9cc047cb-c261-5740-88fc-0cf96f7bdcc7" -version = "300.1400.1300+0" +version = "300.1400.1302+0" [[deps.IrrationalConstants]] git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" @@ -921,9 +929,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IterableTables]] deps = ["DataValues", "IteratorInterfaceExtensions", "Requires", "TableTraits", "TableTraitsUtils"] @@ -933,9 +941,9 @@ version = "1.0.0" [[deps.IterativeSolvers]] deps = ["LinearAlgebra", "Printf", "Random", "RecipesBase", "SparseArrays"] -git-tree-sha1 = "1169632f425f79429f245113b775a0e3d121457c" +git-tree-sha1 = "b435d190ef8369cf4d79cc9dd5fba88ba0165307" uuid = "42fd0dbc-a981-5370-80f2-aaf504508153" -version = "0.9.2" +version = "0.9.3" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -944,15 +952,15 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.7" [[deps.JLLWrappers]] -deps = ["Preferences"] -git-tree-sha1 = "abc9885a7ca2052a736a600f7fa66209f96506e1" +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.4.1" +version = "1.5.0" [[deps.JSON]] deps = ["Dates", "Mmap", "Parsers", "Unicode"] @@ -962,51 +970,49 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "60b1194df0a3298f460063de985eae7b01bc011a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.1+0" [[deps.JuMP]] -deps = ["LinearAlgebra", "MathOptInterface", "MutableArithmetics", "OrderedCollections", "Printf", "SnoopPrecompile", "SparseArrays"] -git-tree-sha1 = "3e4a73edf2ca1bfe97f1fc86eb4364f95ef0fccd" +deps = ["LinearAlgebra", "MacroTools", "MathOptInterface", "MutableArithmetics", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays"] +git-tree-sha1 = "769d01cf0d3d1f3e59594cc43c8b319b36d7c2a3" uuid = "4076af6c-e467-56ae-b986-b466b2749572" -version = "1.11.1" +version = "1.18.0" + + [deps.JuMP.extensions] + JuMPDimensionalDataExt = "DimensionalData" + + [deps.JuMP.weakdeps] + DimensionalData = "0703355e-b756-11e9-17c0-8b28908087d0" [[deps.JumpProcesses]] -deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "TreeViews", "UnPack"] -git-tree-sha1 = "50bd271af7f6cc23be7d24c8c4804809bb5d05ae" +deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "UnPack"] +git-tree-sha1 = "c451feb97251965a9fe40bacd62551a72cc5902c" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.6.3" +version = "9.10.1" +weakdeps = ["FastBroadcast"] + + [deps.JumpProcesses.extensions] + JumpProcessFastBroadcastExt = "FastBroadcast" [[deps.KLU]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] -git-tree-sha1 = "764164ed65c30738750965d55652db9c94c59bfe" +git-tree-sha1 = "884c2968c2e8e7e6bf5956af88cb46aa745c854b" uuid = "ef3ab10e-7fda-4108-b977-705223b18434" -version = "0.4.0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "47be64f040a7ece575c2b5f53ca6da7b548d69f4" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.4" +version = "0.4.1" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] -git-tree-sha1 = "0356a64062656b0cbb43c504ad5de338251f4bda" +git-tree-sha1 = "8a6837ec02fe5fb3def1abc907bb802ef11a0729" uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" -version = "0.9.1" - -[[deps.KrylovKit]] -deps = ["ChainRulesCore", "GPUArraysCore", "LinearAlgebra", "Printf"] -git-tree-sha1 = "1a5e1d9941c783b0119897d29f2eb665d876ecf3" -uuid = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" -version = "0.6.0" +version = "0.9.5" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1020,23 +1026,11 @@ git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "5007c1421563108110bbd57f63d8ad4565808818" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "5.2.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "1222116d7313cdefecf3d45a2bc1a89c4e7c9217" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.22+0" - [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1045,15 +1039,15 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.LabelledArrays]] deps = ["ArrayInterface", "ChainRulesCore", "ForwardDiff", "LinearAlgebra", "MacroTools", "PreallocationTools", "RecursiveArrayTools", "StaticArrays"] -git-tree-sha1 = "cd04158424635efd05ff38d5f55843397b7416a9" +git-tree-sha1 = "f12f2225c999886b69273f84713d1b9cb66faace" uuid = "2ee39098-c373-598a-b85f-a56591580800" -version = "1.14.0" +version = "1.15.0" [[deps.LambertW]] git-tree-sha1 = "c5ffc834de5d61d00d2b0e18c96267cffc21f648" @@ -1062,27 +1056,23 @@ version = "0.4.6" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "8c57307b5d9bb3be1ff2da469063628631d4d51e" +git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.15.21" +version = "0.16.1" [deps.Latexify.extensions] DataFramesExt = "DataFrames" - DiffEqBiologicalExt = "DiffEqBiological" - ParameterizedFunctionsExt = "DiffEqBase" SymEngineExt = "SymEngine" [deps.Latexify.weakdeps] DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - DiffEqBase = "2b5f629d-d688-5b77-993f-72d75c75574e" - DiffEqBiological = "eb300fae-53e8-50a0-950c-e21f52c2b7e0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" [[deps.LayoutPointers]] deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "88b8f66b604da079a627b6fb2860d3704a6729a1" +git-tree-sha1 = "62edfee3211981241b57ff1cedf4d74d79519277" uuid = "10f19ff3-798f-405d-979b-55457f8fc047" -version = "0.1.14" +version = "0.1.15" [[deps.Lazy]] deps = ["MacroTools"] @@ -1091,27 +1081,19 @@ uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" version = "0.15.1" [[deps.LazyArrays]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "MatrixFactorizations", "SparseArrays", "StaticArrays"] -git-tree-sha1 = "7402f6be1a28a05516c6881596879e6d18d28039" +deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "MatrixFactorizations", "SparseArrays"] +git-tree-sha1 = "9cfca23ab83b0dfac93cb1a1ef3331ab9fe596a5" uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "0.22.18" +version = "1.8.3" +weakdeps = ["StaticArrays"] + + [deps.LazyArrays.extensions] + LazyArraysStaticArraysExt = "StaticArrays" [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" -[[deps.LazyBandedMatrices]] -deps = ["ArrayLayouts", "BandedMatrices", "BlockArrays", "BlockBandedMatrices", "FillArrays", "LazyArrays", "LinearAlgebra", "MatrixFactorizations", "SparseArrays", "StaticArrays"] -git-tree-sha1 = "034d371419140f14a986ab7325d11f90f30b0c6d" -uuid = "d7e5e226-e90b-4449-9968-0f923699bf6f" -version = "0.7.17" - -[[deps.LeastSquaresOptim]] -deps = ["FiniteDiff", "ForwardDiff", "LinearAlgebra", "Optim", "Printf", "SparseArrays", "Statistics", "SuiteSparse"] -git-tree-sha1 = "cef2dd16402718cf5f412e610813e2ec20d94a64" -uuid = "0fc2ff8b-aaa3-5acd-a817-1944a5e08891" -version = "0.8.4" - [[deps.LevyArea]] deps = ["LinearAlgebra", "Random", "SpecialFunctions"] git-tree-sha1 = "56513a09b8e0ae6485f34401ea9e2f31357958ec" @@ -1121,21 +1103,26 @@ version = "1.0.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -1165,10 +1152,10 @@ uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" version = "1.42.0+0" [[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c7cb1f5d892775ba13767a87c7ada0b980ea0a71" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.16.1+2" +version = "1.17.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1177,10 +1164,10 @@ uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" version = "2.35.0+0" [[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "Pkg", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "3eb79b0ca5764d4799c06699573fd8f533259713" +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.4.0+0" +version = "4.5.1+1" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1190,9 +1177,9 @@ version = "2.36.0+0" [[deps.LimitedLDLFactorizations]] deps = ["AMD", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "422ddab7cac3f51acc5ae23c96e710d07df9a73e" +git-tree-sha1 = "07b3c94ba4decdd855770beddeab9187be03d6b8" uuid = "f5a24dde-3ab7-510b-b81b-6a72c6098d3b" -version = "0.5.0" +version = "0.5.1" [[deps.LineSearches]] deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] @@ -1205,32 +1192,57 @@ deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LinearMaps]] -deps = ["LinearAlgebra", "SparseArrays", "Statistics"] -git-tree-sha1 = "a1348b9b7c87d45fa859314d56e8a87ace20561e" +deps = ["LinearAlgebra"] +git-tree-sha1 = "9df2ab050ffefe870a09c7b6afdb0cde381703f2" uuid = "7a12625a-238d-50fd-b39a-03d52299707e" -version = "3.10.1" -weakdeps = ["ChainRulesCore"] +version = "3.11.1" +weakdeps = ["ChainRulesCore", "SparseArrays", "Statistics"] [deps.LinearMaps.extensions] LinearMapsChainRulesCoreExt = "ChainRulesCore" + LinearMapsSparseArraysExt = "SparseArrays" + LinearMapsStatisticsExt = "Statistics" [[deps.LinearSolve]] -deps = ["ArrayInterface", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "IterativeSolvers", "KLU", "Krylov", "KrylovKit", "LinearAlgebra", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SnoopPrecompile", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"] -git-tree-sha1 = "4a4f8cc7a59fadbb02d1852d1e0cef5dca3a9460" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "97dc499678d50d989f1a74170840808641ce9880" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "1.42.0" +version = "2.22.0" [deps.LinearSolve.extensions] - LinearSolveHYPRE = "HYPRE" + LinearSolveBandedMatricesExt = "BandedMatrices" + LinearSolveBlockDiagonalsExt = "BlockDiagonals" + LinearSolveCUDAExt = "CUDA" + LinearSolveEnzymeExt = ["Enzyme", "EnzymeCore"] + LinearSolveFastAlmostBandedMatricesExt = ["FastAlmostBandedMatrices"] + LinearSolveHYPREExt = "HYPRE" + LinearSolveIterativeSolversExt = "IterativeSolvers" + LinearSolveKernelAbstractionsExt = "KernelAbstractions" + LinearSolveKrylovKitExt = "KrylovKit" + LinearSolveMetalExt = "Metal" + LinearSolvePardisoExt = "Pardiso" + LinearSolveRecursiveArrayToolsExt = "RecursiveArrayTools" [deps.LinearSolve.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771" + IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "c3ce8e7420b3a6e071e0fe4745f5d4300e37b13f" +git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.24" +version = "0.3.26" [deps.LogExpFunctions.extensions] LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" @@ -1247,15 +1259,15 @@ uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] -git-tree-sha1 = "cedb76b37bc5a6c702ade66be44f831fa23c681e" +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.0" +version = "1.0.3" [[deps.LoopVectorization]] -deps = ["ArrayInterface", "ArrayInterfaceCore", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] -git-tree-sha1 = "3bb62b5003bc7d2d49f26663484267dc49fa1bf5" +deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] +git-tree-sha1 = "0f5648fbae0d015e3abe5867bca2b362f67a5894" uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.12.159" +version = "0.12.166" weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] [deps.LoopVectorization.extensions] @@ -1269,22 +1281,22 @@ uuid = "d00139f3-1899-568f-a2f0-47f597d42d70" version = "5.1.2+0" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "2ce8695e1e699b68702c03402672a69f54b8aca9" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2022.2.0+0" +version = "2024.0.0+0" [[deps.MUMPS_seq_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "METIS_jll", "libblastrampoline_jll"] -git-tree-sha1 = "fcf680f6feb85014723f9754ef560173d4a30843" +git-tree-sha1 = "24dd34802044008ef9a596de32d63f3c9ddb7802" uuid = "d7ed1dd3-d0ae-5e8e-bfb4-87a502085b8d" -version = "500.600.0+0" +version = "500.600.100+0" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "42324d08725e200c23d4dfb549e0d5d89dede2d2" +git-tree-sha1 = "b211c553c199c111d998ecdaf7623d1b89b69f93" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.10" +version = "0.5.12" [[deps.ManualMemory]] git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" @@ -1297,9 +1309,9 @@ uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MathOptInterface]] deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"] -git-tree-sha1 = "19a3636968e802918f8891d729c74bd64dff6d00" +git-tree-sha1 = "d2a140e551c9ec9028483e3c7d1244f417567ac0" uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" -version = "1.17.1" +version = "1.24.0" [[deps.MathProgBase]] deps = ["LinearAlgebra", "SparseArrays"] @@ -1309,20 +1321,26 @@ version = "0.7.8" [[deps.MatrixFactorizations]] deps = ["ArrayLayouts", "LinearAlgebra", "Printf", "Random"] -git-tree-sha1 = "0ff59b4b9024ab9a736db1ad902d2b1b48441c19" +git-tree-sha1 = "78f6e33434939b0ac9ba1df81e6d005ee85a7396" uuid = "a3b82374-2e81-5b9e-98ce-41277c0e4c87" -version = "0.9.6" +version = "2.1.0" + +[[deps.MaybeInplace]] +deps = ["ArrayInterface", "LinearAlgebra", "MacroTools", "SparseArrays"] +git-tree-sha1 = "a85c6a98c9e5a2a7046bc1bb89f28a3241e1de4d" +uuid = "bb5d69b7-63fc-4a16-80bd-7e42200c7bdb" +version = "0.1.1" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1346,7 +1364,7 @@ version = "0.7.7" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1355,9 +1373,9 @@ version = "0.2.4" [[deps.MultivariatePolynomials]] deps = ["ChainRulesCore", "DataStructures", "LinearAlgebra", "MutableArithmetics"] -git-tree-sha1 = "eaa98afe2033ffc0629f9d0d83961d66a021dfcc" +git-tree-sha1 = "6ffb234d6d7c866a75c1879d2099049d3a35a83a" uuid = "102ac46a-7ee4-5c85-9060-abc95bfdeaa3" -version = "0.4.7" +version = "0.5.3" [[deps.MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] @@ -1367,9 +1385,9 @@ version = "0.10.2" [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "964cb1a7069723727025ae295408747a0b36a854" +git-tree-sha1 = "806eea990fb41f9b36f1253e5697aa645bf6a9f8" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.3.0" +version = "1.4.0" [[deps.NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -1395,18 +1413,6 @@ git-tree-sha1 = "019f12e9a1a7880459d0173c182e6a99365d7ac1" uuid = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" version = "4.5.1" -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "99e6dbb50d8a96702dc60954569e9fe7291cc55d" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.20" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - [[deps.NaNMath]] deps = ["OpenLibm_jll"] git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" @@ -1415,30 +1421,57 @@ version = "1.0.2" [[deps.NearestNeighbors]] deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" +version = "0.4.16" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.NonlinearSolve]] -deps = ["ArrayInterface", "DiffEqBase", "EnumX", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SnoopPrecompile", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "a6000c813371cd3cd9cbbdf8a356fc3a97138d92" +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "EnumX", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LazyArrays", "LineSearches", "LinearAlgebra", "LinearSolve", "MaybeInplace", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] +git-tree-sha1 = "72b036b728461272ae1b1c3f7096cb4c319d8793" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "1.6.0" +version = "3.4.0" + + [deps.NonlinearSolve.extensions] + NonlinearSolveBandedMatricesExt = "BandedMatrices" + NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" + NonlinearSolveFixedPointAccelerationExt = "FixedPointAcceleration" + NonlinearSolveLeastSquaresOptimExt = "LeastSquaresOptim" + NonlinearSolveMINPACKExt = "MINPACK" + NonlinearSolveNLsolveExt = "NLsolve" + NonlinearSolveSIAMFANLEquationsExt = "SIAMFANLEquations" + NonlinearSolveSpeedMappingExt = "SpeedMapping" + NonlinearSolveSymbolicsExt = "Symbolics" + NonlinearSolveZygoteExt = "Zygote" + + [deps.NonlinearSolve.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + FastLevenbergMarquardt = "7a0df574-e128-4d35-8cbd-3d84502bf7ce" + FixedPointAcceleration = "817d07cb-a79a-5c30-9a31-890123675176" + LeastSquaresOptim = "0fc2ff8b-aaa3-5acd-a817-1944a5e08891" + MINPACK = "4854310b-de5a-5eb6-a2a5-c1dee2bd17f9" + NLsolve = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" + SIAMFANLEquations = "084e46ad-d928-497d-ad5e-07fa361a48c4" + SpeedMapping = "f1835b91-879b-4a3f-a438-e4baacf14412" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "82d7c9e310fe55aa54996e6f7f94674e2a38fcb4" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.9" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1447,20 +1480,20 @@ uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" version = "1.3.5+1" [[deps.OpenBLAS32_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "2fb9ee2dc14d555a6df2a714b86b7125178344c2" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6065c4cff8fee6c6770b277af45d5082baacdba1" uuid = "656ef2d0-ae68-5445-9ca0-591084a874a2" -version = "0.3.21+0" +version = "0.3.24+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+2" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1470,9 +1503,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1aa4b74f80b01c6bc2b89992b861b5f210e665b5" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.21+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1482,9 +1515,9 @@ version = "0.5.5+0" [[deps.Optim]] deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] -git-tree-sha1 = "e3a6546c1577bfd701771b477b794a52949e7594" +git-tree-sha1 = "01f85d9269b13fedc61e63cc72ee2213565f7a72" uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "1.7.6" +version = "1.7.8" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1493,26 +1526,32 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "d321bf2de576bf25ec4d3e4360faca399afca282" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.0" +version = "1.6.3" [[deps.OrdinaryDiffEq]] -deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "6ffebfa8971546bace3fc312f9a703795f79f5b9" +deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] +git-tree-sha1 = "e50bc309307871b5f2ec10075c4faf8ca018068f" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.51.2" +version = "6.67.0" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "67eae2738d63117a196f497d7db789821bce61d1" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.17" +version = "0.11.31" + +[[deps.PackageExtensionCompat]] +git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518" +uuid = "65ce6f38-6b18-4e1d-a461-8949797d7930" +version = "1.0.2" +weakdeps = ["Requires", "TOML"] [[deps.Parameters]] deps = ["OrderedCollections", "UnPack"] @@ -1522,9 +1561,9 @@ version = "0.12.3" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "a5aef8d4a6e8d81f171b2bd4be5265b01384c74c" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.10" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1540,7 +1579,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.0" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1550,15 +1589,15 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ceb1ec8d4fbeb02f8817004837d924583707951b" +git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.15" +version = "1.39.0" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1582,9 +1621,9 @@ version = "0.4.4" [[deps.Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "0fe4e7c4d8ff4c70bfa507f0dd96fa161b115777" +git-tree-sha1 = "fca25670784a1ae44546bcb17288218310af2778" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.3" +version = "0.7.9" [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] @@ -1593,26 +1632,28 @@ uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" version = "0.2.1" [[deps.Polynomials]] -deps = ["LinearAlgebra", "RecipesBase"] -git-tree-sha1 = "3aa2bb4982e575acd7583f01531f241af077b163" +deps = ["LinearAlgebra", "RecipesBase", "Setfield", "SparseArrays"] +git-tree-sha1 = "a9c7a523d5ed375be3983db190f6a5874ae9286d" uuid = "f27b6e38-b328-58d1-80ce-0feddd5e7a45" -version = "3.2.13" +version = "4.0.6" [deps.Polynomials.extensions] PolynomialsChainRulesCoreExt = "ChainRulesCore" + PolynomialsFFTWExt = "FFTW" PolynomialsMakieCoreExt = "MakieCore" PolynomialsMutableArithmeticsExt = "MutableArithmetics" [deps.Polynomials.weakdeps] ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + FFTW = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" MakieCore = "20f20a25-4f0e-4fdf-b5d1-57303727442b" MutableArithmetics = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" [[deps.PooledArrays]] deps = ["DataAPI", "Future"] -git-tree-sha1 = "a6062fe4063cdafe78f4a0a81cfffb89721b30e7" +git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" -version = "1.4.2" +version = "1.4.3" [[deps.PositiveFactorizations]] deps = ["LinearAlgebra"] @@ -1621,10 +1662,10 @@ uuid = "85a6dd25-e78a-55b7-8502-1745935b8125" version = "0.2.4" [[deps.PreallocationTools]] -deps = ["Adapt", "ArrayInterface", "ForwardDiff", "Requires"] -git-tree-sha1 = "f739b1b3cc7b9949af3b35089931f2b58c289163" +deps = ["Adapt", "ArrayInterface", "ForwardDiff"] +git-tree-sha1 = "13078a8afc9f88ede295c17c3c673eb52c05b0b4" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "0.4.12" +version = "0.4.16" [deps.PreallocationTools.extensions] PreallocationToolsReverseDiffExt = "ReverseDiff" @@ -1634,33 +1675,33 @@ version = "0.4.12" [[deps.PrecompileTools]] deps = ["Preferences"] -git-tree-sha1 = "9673d39decc5feece56ef3940e5dafba15ba0f81" +git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.1.2" +version = "1.2.0" [[deps.Preconditioners]] deps = ["AlgebraicMultigrid", "LimitedLDLFactorizations", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "00187593573e2bbc3c9d8b1f0488f324e6be30b2" +git-tree-sha1 = "a02fc23058e6264b0f73523e99e2dd1a20232dff" uuid = "af69fa37-3177-5a40-98ee-561f696e4fcd" -version = "0.6.0" +version = "0.6.1" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "7eb1686b4f04b82f96ed7a4ea5890a4f0c7a09f1" +git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.0" +version = "1.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "Formatting", "LaTeXStrings", "Markdown", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "213579618ec1f42dea7dd637a42785a608b1ea9c" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.4" +version = "2.3.1" [[deps.Primes]] deps = ["IntegerMathUtils"] -git-tree-sha1 = "311a2aa90a64076ea0fac2ad7492e914e6feeb81" +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" -version = "0.5.3" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -1672,21 +1713,21 @@ uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" [[deps.ProgressMeter]] deps = ["Distributed", "Printf"] -git-tree-sha1 = "d7a7aef8f8f2d537104f170139553b14dfe39fe9" +git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.7.2" +version = "1.9.0" -[[deps.Qt5Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "xkbcommon_jll"] -git-tree-sha1 = "0c03844e2231e12fda4d0086fd7cbe4098ee8dc5" -uuid = "ea2cea3b-5b76-57ae-a6ef-0a8af62496e1" -version = "5.15.3+2" +[[deps.Qt6Base_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" +uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "6ec7ac8412e83d57e313393220879ede1740f9ee" +git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.8.2" +version = "2.9.1" [[deps.QuantEcon]] deps = ["DSP", "DataStructures", "Distributions", "FFTW", "Graphs", "LinearAlgebra", "Markdown", "NLopt", "Optim", "Pkg", "Primes", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "Test"] @@ -1723,20 +1764,20 @@ deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "c860e84651f58ce240dd79e5d9e055d55234c35a" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.6.2" [[deps.RandomExtensions]] deps = ["Random", "SparseArrays"] -git-tree-sha1 = "062986376ce6d394b23d5d90f01d81426113a3c9" +git-tree-sha1 = "b8a399e95663485820000f26b6a43c794e166a49" uuid = "fb686558-2515-59ef-acaa-46db3789a887" -version = "0.4.3" +version = "0.4.4" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1754,12 +1795,6 @@ weakdeps = ["FixedPointNumbers"] [deps.Ratios.extensions] RatiosFixedPointNumbersExt = "FixedPointNumbers" -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - [[deps.RecipesBase]] deps = ["PrecompileTools"] git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" @@ -1773,26 +1808,30 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "02ef02926f30d53b94be443bfaea010c47f6b556" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "27ee1c03e732c488ecce1a25f0d7da9b5d936574" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.38.5" +version = "3.3.3" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.RecursiveFactorization]] -deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "SnoopPrecompile", "StrideArraysCore", "TriangularSolve"] -git-tree-sha1 = "9088515ad915c99026beb5436d0a09cd8c18163e" +deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "PrecompileTools", "StrideArraysCore", "TriangularSolve"] +git-tree-sha1 = "8bc86c78c7d8e2a5fe559e3721c0f9c9e303b2ed" uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" -version = "0.2.18" +version = "0.2.21" [[deps.Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1800,16 +1839,28 @@ uuid = "189a3867-3050-52da-a836-e630ba90ab69" version = "1.2.2" [[deps.RegressionTables]] -deps = ["Compat", "Distributions", "FixedEffectModels", "Formatting", "GLM", "Statistics", "StatsBase", "StatsModels", "UnPack"] -git-tree-sha1 = "129bad054effa2b5cb3e2cded441ad316f918b2e" +deps = ["Distributions", "Formatting", "Statistics", "StatsAPI", "StatsBase", "StatsModels"] +git-tree-sha1 = "06c8c14778b921c7d0d588b57315efc6624ab883" uuid = "d519eb52-b820-54da-95a6-98e1306fdade" -version = "0.5.9" +version = "0.6.1" + + [deps.RegressionTables.extensions] + RegressionTablesFixedEffectModelsExt = "FixedEffectModels" + RegressionTablesGLFixedEffectModelsExt = "GLFixedEffectModels" + RegressionTablesGLMExt = "GLM" + RegressionTablesMixedModelsExt = "MixedModels" + + [deps.RegressionTables.weakdeps] + FixedEffectModels = "9d5cd8c9-2029-5cab-9928-427838db53e3" + GLFixedEffectModels = "bafb0ae5-e5f5-5100-81b6-6a55d777c812" + GLM = "38e38edf-8417-5370-95a0-9cbb8c7f171a" + MixedModels = "ff71e718-51f3-5ec2-a782-8ffcbfa3c316" [[deps.RelocatableFolders]] deps = ["SHA", "Scratch"] -git-tree-sha1 = "90bc7a7c96410424509e4263e277e43250c05691" +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.0" +version = "1.0.1" [[deps.Requires]] deps = ["UUIDs"] @@ -1837,30 +1888,38 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "de432823e8aab4dd1a985be4be768f95acf152d4" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.17" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" RootsIntervalRootFindingExt = "IntervalRootFinding" RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" [deps.Roots.weakdeps] ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "237edc1563bbf078629b4f8d194bd334e97907cf" +git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.11" +version = "0.5.12" [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" +[[deps.SIMD]] +deps = ["PrecompileTools"] +git-tree-sha1 = "d8911cc125da009051fb35322415641d02d9e37f" +uuid = "fdea26ae-647d-5447-a871-4b548cad5224" +version = "3.4.6" + [[deps.SIMDTypes]] git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" uuid = "94e857df-77ce-4151-89e5-788b33177be4" @@ -1868,45 +1927,56 @@ version = "0.1.0" [[deps.SLEEFPirates]] deps = ["IfElse", "Static", "VectorizationBase"] -git-tree-sha1 = "4b8586aece42bee682399c4c4aee95446aa5cd19" +git-tree-sha1 = "3aac6d68c5e57449f5b9b865c9ba50ac2970c4cf" uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" -version = "0.6.39" +version = "0.6.42" [[deps.SPRAL_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "Libdl", "METIS_jll", "libblastrampoline_jll"] -git-tree-sha1 = "6dc840d44f2081ac112d29f1d7b9446054d6e763" +git-tree-sha1 = "d1ca34081034a9c6903cfbe068a952a739c2aa5c" uuid = "319450e9-13b8-58e8-aa9f-8fd1420848ab" -version = "2023.3.29+0" +version = "2023.8.2+0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "ddf57a23d610d30d0c4bd01132f4646a2a77d171" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "09324a0ae70c52a45b91b236c62065f78b099c37" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.92.5" - -[[deps.SciMLNLSolve]] -deps = ["DiffEqBase", "LineSearches", "NLsolve", "Reexport", "SciMLBase"] -git-tree-sha1 = "2d00015fa0a190220dc5605406b85073f6634391" -uuid = "e9a6253c-8580-4d32-9898-8661bb511710" -version = "0.1.7" +version = "2.15.2" + + [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "6a657a73322170eec86fb427661dbee079b85bff" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.2.12" +version = "0.3.7" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1938,14 +2008,16 @@ uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" version = "1.1.0" [[deps.SimpleNonlinearSolve]] -deps = ["ArrayInterface", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "PrecompileTools", "Reexport", "Requires", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "7c55a3e65aad4ce6e610409cdd564b8d590b9726" +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "8d672bd91dc432fb286b6d4bcf1a5dc417e932a3" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "0.1.15" -weakdeps = ["NNlib"] +version = "1.2.0" [deps.SimpleNonlinearSolve.extensions] - SimpleBatchedNonlinearSolveExt = "NNlib" + SimpleNonlinearSolvePolyesterForwardDiffExt = "PolyesterForwardDiff" + + [deps.SimpleNonlinearSolve.weakdeps] + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" [[deps.SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] @@ -1958,30 +2030,35 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" -[[deps.SnoopPrecompile]] -deps = ["Preferences"] -git-tree-sha1 = "e760a70afdcd461cf01a575947738d359234665c" -uuid = "66db9d55-30c0-4569-8b51-7e840670fc0c" -version = "1.0.3" - [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "a4ada03f999bd01b3a25dcaa30b2d929fe537e00" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.0" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseDiffTools]] -deps = ["Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "Requires", "SparseArrays", "StaticArrays", "VertexSafeGraphs"] -git-tree-sha1 = "e19ac47477c9a8fcca06dab5e5471417d5d9d723" +deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] +git-tree-sha1 = "c281e11db4eacb36a292a054bac83c5a0aca2a26" uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "1.31.0" +version = "2.15.0" + + [deps.SparseDiffTools.extensions] + SparseDiffToolsEnzymeExt = "Enzyme" + SparseDiffToolsSymbolicsExt = "Symbolics" + SparseDiffToolsZygoteExt = "Zygote" + + [deps.SparseDiffTools.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.Sparspak]] deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] @@ -1989,16 +2066,11 @@ git-tree-sha1 = "342cf4b449c299d8d1ceaf00b7a49f4fbc7940e7" uuid = "e56a9233-b9d6-4f03-8d0f-1825330902ac" version = "0.3.9" -[[deps.SpatialIndexing]] -git-tree-sha1 = "bacf5065cd7c0d6449b8bba6fa8e75b3087356b0" -uuid = "d4ead438-fe20-5cc5-a293-4fd39a41b74c" -version = "0.1.5" - [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" +git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.2.0" +version = "2.3.1" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -2006,15 +2078,15 @@ weakdeps = ["ChainRulesCore"] [[deps.Static]] deps = ["IfElse"] -git-tree-sha1 = "dbde6766fc677423598138a5951269432b0fcc90" +git-tree-sha1 = "f295e0a1da4ca425659c57441bcb59abb035a4bc" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "0.8.7" +version = "0.8.8" [[deps.StaticArrayInterface]] -deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "Static", "SuiteSparse"] -git-tree-sha1 = "33040351d2403b84afce74dae2e22d3f5b18edcb" +deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"] +git-tree-sha1 = "5d66818a39bb04bf328e92bc933ec5b4ee88e436" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.4.0" +version = "1.5.0" weakdeps = ["OffsetArrays", "StaticArrays"] [deps.StaticArrayInterface.extensions] @@ -2022,32 +2094,37 @@ weakdeps = ["OffsetArrays", "StaticArrays"] StaticArrayInterfaceStaticArraysExt = "StaticArrays" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "832afbae2a45b4ae7e831f86965469a24d1d8a83" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "42d5373c10272d14ef49cc68ffc22df3b93c549a" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.26" +version = "1.8.2" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] -git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.0" +version = "1.4.2" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] -git-tree-sha1 = "45a7769a04a3cf80da1c1c7c60caf932e6f4c9f7" +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.6.0" +version = "1.7.0" [[deps.StatsBase]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916" +git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.33.21" +version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] @@ -2064,72 +2141,81 @@ version = "1.3.0" InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" [[deps.StatsModels]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "a5e15f27abd2692ccb61a99e0854dfb7d48017db" +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsAPI", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "5cf6c4583533ee38639f73b880f35fc85f2941e0" uuid = "3eaba693-59b7-5ba5-a881-562e759f1c8d" -version = "0.6.33" +version = "0.7.3" [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "14ef622cf28b05e38f8af1de57bc9142b03fbfe3" +git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.5" +version = "0.15.6" [[deps.StochasticDiffEq]] -deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "DocStringExtensions", "FillArrays", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LevyArea", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] -git-tree-sha1 = "073da86200349ddf4ef8bc3e3f3acd62e1d554f7" +deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "DocStringExtensions", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LevyArea", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] +git-tree-sha1 = "753219de57ac7aab0feb88871d3c51e0eb5e3b03" uuid = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0" -version = "6.60.0" +version = "6.64.0" [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "602a8bef17c744f1de965979398597dfa50e1a2f" +git-tree-sha1 = "d6415f66f3d89c615929af907fdc6a3e17af0d8c" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.4.15" +version = "0.5.2" [[deps.StringManipulation]] -git-tree-sha1 = "46da2434b41f41ac3594ee9816ce5541c6096123" +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.0" - -[[deps.StructArrays]] -deps = ["Adapt", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "521a0e828e98bb69042fec1809c1b5a680eb7389" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.15" +version = "0.3.4" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "9336430df9a96f7d85268304b6c3b93f92fb7ff2" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.2" [[deps.SymbolicUtils]] -deps = ["AbstractTrees", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "IfElse", "LabelledArrays", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "TimerOutputs", "Unityper"] -git-tree-sha1 = "5cb1f963f82e7b81305102dd69472fcd3e0e1483" +deps = ["AbstractTrees", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "IfElse", "LabelledArrays", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "TimerOutputs", "Unityper"] +git-tree-sha1 = "849b1dfb1680a9e9f2c6023f79a49b694fb6d0da" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" -version = "1.0.5" +version = "1.5.0" [[deps.Symbolics]] -deps = ["ArrayInterface", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "Groebner", "IfElse", "LaTeXStrings", "LambertW", "Latexify", "Libdl", "LinearAlgebra", "MacroTools", "Markdown", "NaNMath", "RecipesBase", "Reexport", "Requires", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicUtils", "TreeViews"] -git-tree-sha1 = "fce1fd0b13f860128c8b8aab0bab475eeeeb7994" +deps = ["ArrayInterface", "Bijections", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "Groebner", "IfElse", "LaTeXStrings", "LambertW", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "PrecompileTools", "RecipesBase", "Reexport", "Requires", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils"] +git-tree-sha1 = "29856d1168412550fcd74f76ea5560bc2cac06ee" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "5.1.0" +version = "5.15.1" + + [deps.Symbolics.extensions] + SymbolicsPreallocationToolsExt = ["ForwardDiff", "PreallocationTools"] + SymbolicsSymPyExt = "SymPy" + + [deps.Symbolics.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + PreallocationTools = "d236fae5-4411-538c-8e31-a6e3d9e00b46" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" [[deps.TOML]] deps = ["Dates"] uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" version = "1.0.3" +[[deps.TZJData]] +deps = ["Artifacts"] +git-tree-sha1 = "d39314cdbaf5b90a047db33858626f8d1cc973e1" +uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" +version = "1.0.0+2023c" + [[deps.TableOperations]] deps = ["SentinelArrays", "Tables", "Test"] git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" @@ -2137,10 +2223,10 @@ uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" version = "1.2.0" [[deps.TableShowUtils]] -deps = ["DataValues", "Dates", "JSON", "Markdown", "Test"] -git-tree-sha1 = "14c54e1e96431fb87f0d2f5983f090f1b9d06457" +deps = ["DataValues", "Dates", "JSON", "Markdown", "Unicode"] +git-tree-sha1 = "2a41a3dedda21ed1184a47caab56ed9304e9a038" uuid = "5e66a065-1f0a-5976-b372-e0b8c017ca10" -version = "0.2.5" +version = "0.2.6" [[deps.TableTraits]] deps = ["IteratorInterfaceExtensions"] @@ -2155,10 +2241,10 @@ uuid = "382cd787-c1b6-5bf2-a167-d5b971a19bda" version = "1.0.2" [[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"] -git-tree-sha1 = "1544b926975372da01227b382066ab70e574a3ec" +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.10.1" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -2177,15 +2263,19 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.ThreadingUtilities]] deps = ["ManualMemory"] -git-tree-sha1 = "c97f60dd4f2331e1a495527f80d242501d2f9865" +git-tree-sha1 = "eda08f7e9818eb53661b3deb74e3159460dfbc27" uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" -version = "0.5.1" +version = "0.5.2" [[deps.TimeZones]] -deps = ["Dates", "Downloads", "InlineStrings", "LazyArtifacts", "Mocking", "Printf", "RecipesBase", "Scratch", "Unicode"] -git-tree-sha1 = "cdaa0c2a4449724aded839550eca7d7240bb6938" +deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "LazyArtifacts", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] +git-tree-sha1 = "89e64d61ef3cd9e80f7fc12b7d13db2d75a23c03" uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" -version = "1.10.0" +version = "1.13.0" +weakdeps = ["RecipesBase"] + + [deps.TimeZones.extensions] + TimeZonesRecipesBaseExt = "RecipesBase" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] @@ -2194,38 +2284,35 @@ uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" version = "0.5.23" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] -[[deps.TreeViews]] -deps = ["Test"] -git-tree-sha1 = "8d0d7a3fe2f30d6a7f833a5f19f7c7a5b396eae6" -uuid = "a2a6695c-b41b-5b7d-aed9-dbfdeacea5d7" -version = "0.3.0" + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.TriangularSolve]] deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] -git-tree-sha1 = "31eedbc0b6d07c08a700e26d31298ac27ef330eb" +git-tree-sha1 = "fadebab77bf3ae041f77346dd1c290173da5a443" uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" -version = "0.1.19" +version = "0.1.20" [[deps.Tricks]] -git-tree-sha1 = "aadb748be58b492045b4f56166b5188aa63ce549" +git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.7" +version = "0.1.8" [[deps.TruncatedStacktraces]] deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "7bc1632a4eafbe9bd94cf1a784a9a4eb5e040a91" +git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.3.0" +version = "1.4.0" [[deps.URIs]] -git-tree-sha1 = "074f993b0ca030848b897beff716d93aca60f06a" +git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.4.2" +version = "1.5.1" [[deps.UUIDs]] deps = ["Random", "SHA"] @@ -2246,15 +2333,17 @@ uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" version = "0.4.1" [[deps.Unitful]] -deps = ["ConstructionBase", "Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "ba4aa36b2d5c98d6ed1f149da916b3ba46527b2b" +deps = ["Dates", "LinearAlgebra", "Random"] +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.14.0" +version = "1.19.0" [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" InverseFunctionsUnitfulExt = "InverseFunctions" [deps.Unitful.weakdeps] + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" [[deps.UnitfulLatexify]] @@ -2265,20 +2354,9 @@ version = "1.6.3" [[deps.Unityper]] deps = ["ConstructionBase"] -git-tree-sha1 = "d5f4ec8c22db63bd3ccb239f640e895cfde145aa" +git-tree-sha1 = "25008b734a03736c41e2a7dc314ecb95bd6bbdb0" uuid = "a7c27f48-0311-42f6-a7f8-2c11e75eb415" -version = "0.1.2" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "ea37e6066bf194ab78f4e747f5245261f17a7175" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.2" +version = "0.1.6" [[deps.Unzip]] git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" @@ -2287,15 +2365,15 @@ version = "0.2.0" [[deps.Vcov]] deps = ["Combinatorics", "GroupedArrays", "LinearAlgebra", "StatsAPI", "StatsBase", "Tables"] -git-tree-sha1 = "7391d297ff5bff38c7158f0e04aaf2f4974b74ba" +git-tree-sha1 = "22491492d601448b0fef54afe8a5bdfd67282965" uuid = "ec2bfdc2-55df-4fc9-b9ae-4958c2cf2486" -version = "0.7.1" +version = "0.8.1" [[deps.VectorizationBase]] deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "b182207d4af54ac64cbc71797765068fdeff475d" +git-tree-sha1 = "7209df901e6ed7489fe9b7aa3e46fb788e15db85" uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" -version = "0.21.64" +version = "0.21.65" [[deps.VertexSafeGraphs]] deps = ["Graphs"] @@ -2303,17 +2381,23 @@ git-tree-sha1 = "8351f8d73d7e880bfc042a8b6922684ebeafb35c" uuid = "19fa3120-7c27-5ec5-8db8-b0b0aa330d6f" version = "0.2.0" +[[deps.Vulkan_Loader_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] +git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" +uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" +version = "1.3.243+0" + [[deps.Wayland_jll]] -deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "ed8d92d9774b077c53e1da50fd81a36af3744c1c" +deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+0" +version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" [[deps.WeakRefStrings]] deps = ["DataAPI", "InlineStrings", "Parsers"] @@ -2329,9 +2413,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.WorkerUtilities]] git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" @@ -2339,10 +2423,10 @@ uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60" version = "1.6.1" [[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "93c41695bc1c08c46c5899f4fe06d6ead504bb73" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] +git-tree-sha1 = "801cbe47eae69adc50f36c3caec4758d2650741b" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.10.3+0" +version = "2.12.2+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -2350,17 +2434,35 @@ git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" uuid = "aed1982a-8fda-507f-9586-7b0439959a61" version = "1.1.34+0" +[[deps.XZ_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" +uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" +version = "5.4.5+0" + +[[deps.Xorg_libICE_jll]] +deps = ["Libdl", "Pkg"] +git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" +uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" +version = "1.0.10+1" + +[[deps.Xorg_libSM_jll]] +deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] +git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" +uuid = "c834827a-8449-5923-a945-d239c165b7dd" +version = "1.2.3+0" + [[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "5be649d550f3f4b95308bf0183b82e2582876527" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] +git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.6.9+4" +version = "1.8.6+0" [[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4e490d5c960c314f33885790ed410ff3a94ce67e" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.9+4" +version = "1.0.11+0" [[deps.Xorg_libXcursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] @@ -2369,10 +2471,10 @@ uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" version = "1.2.0+4" [[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fe47bd2247248125c428978740e18a681372dd4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.3+4" +version = "1.1.4+0" [[deps.Xorg_libXext_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -2411,22 +2513,28 @@ uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" version = "0.9.10+4" [[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6783737e45d3c59a4a4c4091f5f88cdcf0908cbb" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.0+3" +version = "0.1.1+0" [[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "daf17f441228e7a3833846cd048892861cff16d6" +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.13.0+3" +version = "1.15.0+0" [[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "926af861744212db0eb001d9e40b5d16292080b2" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.0+4" +version = "1.1.2+0" + +[[deps.Xorg_xcb_util_cursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] +git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" +version = "0.1.4+0" [[deps.Xorg_xcb_util_image_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] @@ -2459,27 +2567,27 @@ uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" version = "0.4.1+1" [[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "4bcbf660f6c2e714f87e960a171b119d06ee163b" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] +git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.2+4" +version = "1.4.6+0" [[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "5c8424f8a67c3f2209646d4425f3d415fee5931d" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] +git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.27.0+4" +version = "2.39.0+0" [[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "79c31e7844f6ecf779705fbc12146eb190b7d845" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.4.0+3" +version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2487,33 +2595,23 @@ git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" version = "1.5.5+0" -[[deps.Zygote]] -deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "5be3ddb88fc992a7d8ea96c3f10a49a7e98ebc7b" -uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.6.62" - - [deps.Zygote.extensions] - ZygoteColorsExt = "Colors" - ZygoteDistancesExt = "Distances" - ZygoteTrackerExt = "Tracker" - - [deps.Zygote.weakdeps] - Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" - Distances = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +[[deps.eudev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] +git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" +version = "3.2.9+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.43.0+0" + +[[deps.gperf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" +uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" +version = "3.1.1+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2530,7 +2628,13 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" + +[[deps.libevdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" +version = "1.11.0+0" [[deps.libfdk_aac_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2538,11 +2642,17 @@ git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" version = "2.0.2+0" +[[deps.libinput_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +uuid = "36db933b-70db-51c0-b978-0f229ee0e533" +version = "1.18.0+0" + [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "93284c28274d9e75218a416c65ec49d0e0fcdf3d" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.40+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2550,15 +2660,21 @@ git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" version = "1.3.7+1" +[[deps.mtdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" +version = "1.1.6+0" + [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2574,6 +2690,6 @@ version = "3.5.0+0" [[deps.xkbcommon_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9ebfc140cc56e8c2156a15ceac2f0302e327ac0a" +git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+0" +version = "1.4.1+1" diff --git a/lectures/Project.toml b/lectures/Project.toml index b1987bf5..1e00c810 100644 --- a/lectures/Project.toml +++ b/lectures/Project.toml @@ -1,17 +1,15 @@ name = "quantecon-notebooks-julia" authors = ["quantecon "] -version = "0.8.1" +version = "0.10.0" [deps] Arpack = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" -BlackBoxOptim = "a134a8b2-14d6-55f6-9291-3336d3ab0209" CategoricalArrays = "324d7699-5711-5eae-9e2f-1d82baa6b597" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" DataFramesMeta = "1313f7d8-7da2-5740-9ea0-a2ca25f37964" DataInterpolations = "82cc6244-b520-54b8-b5a6-8a565e85f1d0" -DiffEqOperators = "9fdde737-9c7f-55bf-ade8-46b3f136cc48" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Expectations = "2fe49d83-0758-5602-8f54-1f90ad0d522b" FastGaussQuadrature = "442a2c76-b920-505d-bb47-c5924d526838" @@ -27,7 +25,6 @@ JuMP = "4076af6c-e467-56ae-b986-b466b2749572" KernelDensity = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" LaTeXStrings = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" Latexify = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -LeastSquaresOptim = "0fc2ff8b-aaa3-5acd-a817-1944a5e08891" LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" LinearMaps = "7a12625a-238d-50fd-b39a-03d52299707e" LoopVectorization = "bdcacae8-1622-11e9-2a5c-532679323890" @@ -54,4 +51,3 @@ StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" StochasticDiffEq = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0" Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" -Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" diff --git a/lectures/_config.yml b/lectures/_config.yml index 966d57d6..33c4da49 100644 --- a/lectures/_config.yml +++ b/lectures/_config.yml @@ -88,7 +88,7 @@ sphinx: rediraffe_redirects: index_toc.md: intro.md tojupyter_default_lang: julia - tojupyter_lang_synonyms: ['julia-1.9'] + tojupyter_lang_synonyms: ['julia-1.10'] tojupyter_static_file_path: ["source/_static", "_static"] tojupyter_target_html: true tojupyter_urlpath: "https://julia.quantecon.org/" @@ -98,5 +98,5 @@ sphinx: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 tojupyter_images_markdown: true diff --git a/lectures/about_lectures.md b/lectures/about_lectures.md index 0adf01a8..bce53881 100644 --- a/lectures/about_lectures.md +++ b/lectures/about_lectures.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (about)= diff --git a/lectures/continuous_time/covid_sde.md b/lectures/continuous_time/covid_sde.md index c0576465..fae1e19b 100644 --- a/lectures/continuous_time/covid_sde.md +++ b/lectures/continuous_time/covid_sde.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (covid_sde)= diff --git a/lectures/continuous_time/seir_model.md b/lectures/continuous_time/seir_model.md index c36fdb06..5cc01c4c 100644 --- a/lectures/continuous_time/seir_model.md +++ b/lectures/continuous_time/seir_model.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (seir_model)= diff --git a/lectures/dynamic_programming/career.md b/lectures/dynamic_programming/career.md index 3427a329..d850e558 100644 --- a/lectures/dynamic_programming/career.md +++ b/lectures/dynamic_programming/career.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (career)= diff --git a/lectures/dynamic_programming/coleman_policy_iter.md b/lectures/dynamic_programming/coleman_policy_iter.md index 2139ff21..cd1de243 100644 --- a/lectures/dynamic_programming/coleman_policy_iter.md +++ b/lectures/dynamic_programming/coleman_policy_iter.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (coleman_policy_iter)= diff --git a/lectures/dynamic_programming/discrete_dp.md b/lectures/dynamic_programming/discrete_dp.md index 0e0c5857..b7df784b 100644 --- a/lectures/dynamic_programming/discrete_dp.md +++ b/lectures/dynamic_programming/discrete_dp.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (discrete_dp)= diff --git a/lectures/dynamic_programming/egm_policy_iter.md b/lectures/dynamic_programming/egm_policy_iter.md index c5327d6b..35d64061 100644 --- a/lectures/dynamic_programming/egm_policy_iter.md +++ b/lectures/dynamic_programming/egm_policy_iter.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (egm_policy_iter)= diff --git a/lectures/dynamic_programming/ifp.md b/lectures/dynamic_programming/ifp.md index 5b38c984..29a60008 100644 --- a/lectures/dynamic_programming/ifp.md +++ b/lectures/dynamic_programming/ifp.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (ifp)= diff --git a/lectures/dynamic_programming/jv.md b/lectures/dynamic_programming/jv.md index f103f6f5..58485e32 100644 --- a/lectures/dynamic_programming/jv.md +++ b/lectures/dynamic_programming/jv.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (jv)= diff --git a/lectures/dynamic_programming/lqcontrol.md b/lectures/dynamic_programming/lqcontrol.md index 2e0e97a8..7867f5e7 100644 --- a/lectures/dynamic_programming/lqcontrol.md +++ b/lectures/dynamic_programming/lqcontrol.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (lqc)= diff --git a/lectures/dynamic_programming/mccall_model.md b/lectures/dynamic_programming/mccall_model.md index e9f2a3cd..40cc4285 100644 --- a/lectures/dynamic_programming/mccall_model.md +++ b/lectures/dynamic_programming/mccall_model.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (mccall)= diff --git a/lectures/dynamic_programming/mccall_model_with_separation.md b/lectures/dynamic_programming/mccall_model_with_separation.md index 357e3438..a1a05ff3 100644 --- a/lectures/dynamic_programming/mccall_model_with_separation.md +++ b/lectures/dynamic_programming/mccall_model_with_separation.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (mccall_with_sep)= diff --git a/lectures/dynamic_programming/odu.md b/lectures/dynamic_programming/odu.md index 0abca506..08db5a86 100644 --- a/lectures/dynamic_programming/odu.md +++ b/lectures/dynamic_programming/odu.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (odu)= diff --git a/lectures/dynamic_programming/optgrowth.md b/lectures/dynamic_programming/optgrowth.md index 1afcbc65..94ec3f62 100644 --- a/lectures/dynamic_programming/optgrowth.md +++ b/lectures/dynamic_programming/optgrowth.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (optgrowth)= diff --git a/lectures/dynamic_programming/perm_income.md b/lectures/dynamic_programming/perm_income.md index 1fa228e1..765ddcd6 100644 --- a/lectures/dynamic_programming/perm_income.md +++ b/lectures/dynamic_programming/perm_income.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (perm_income)= diff --git a/lectures/dynamic_programming/perm_income_cons.md b/lectures/dynamic_programming/perm_income_cons.md index 6b880d27..e4accdf0 100644 --- a/lectures/dynamic_programming/perm_income_cons.md +++ b/lectures/dynamic_programming/perm_income_cons.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (perm_income_cons)= diff --git a/lectures/dynamic_programming/robustness.md b/lectures/dynamic_programming/robustness.md index 38ed5ab9..37ef6fb0 100644 --- a/lectures/dynamic_programming/robustness.md +++ b/lectures/dynamic_programming/robustness.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (rob)= diff --git a/lectures/dynamic_programming/smoothing.md b/lectures/dynamic_programming/smoothing.md index 4fe147b0..31514075 100644 --- a/lectures/dynamic_programming/smoothing.md +++ b/lectures/dynamic_programming/smoothing.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (smoothing)= diff --git a/lectures/dynamic_programming/wald_friedman.md b/lectures/dynamic_programming/wald_friedman.md index 3413dd26..033f5382 100644 --- a/lectures/dynamic_programming/wald_friedman.md +++ b/lectures/dynamic_programming/wald_friedman.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (wald_friedman)= @@ -509,7 +509,7 @@ function simulation(problem) return return_output ? (alpha, beta, outcomes, costs, trials) : nothing end -function Problem(d0 = Beta(1, 1), d1 = Beta(9, 9), +function Problem(;d0 = Beta(1, 1), d1 = Beta(9, 9), L0 = 2, L1 = 2, c = 0.2, p = 0.5, n = 100, return_output = false) @@ -524,7 +524,7 @@ tags: [remove-cell] @testset "Verifying Output" begin Random.seed!(0) (;d0, d1, L0, L1, c) = Problem() - alpha, beta, outcomes, costs, trials = simulation(Problem(return_output = true)) + alpha, beta, outcomes, costs, trials = simulation(Problem(;return_output = true)) #test alpha ≈ 0.57428237 #test beta ≈ 0.352510338 choices = first.(choice.((clamp(beta - eps(), 0, 1), @@ -551,7 +551,7 @@ tags: [remove-cell] @testset "Comparative Statics" begin Random.seed!(0) (;d0, d1, L0, L1, c) = Problem() - alpha, beta, outcomes, costs, trials = simulation(Problem(c = 2c, return_output = true)) + alpha, beta, outcomes, costs, trials = simulation(Problem(;c = 2c, return_output = true)) #test alpha ≈ 0.53551172 atol = 1e-3 #test beta ≈ 0.41244737 atol = 1e-3 #test mean(outcomes) ≈ 0.39 atol = 1e-2 @@ -582,7 +582,7 @@ Before you look, think about what will happen: ```{code-cell} julia Random.seed!(0); -simulation(Problem(c = 0.4)); +simulation(Problem(;c = 0.4)); ``` Notice what happens? diff --git a/lectures/dynamic_programming_squared/amss.md b/lectures/dynamic_programming_squared/amss.md index e9fee44a..1bc4fee1 100644 --- a/lectures/dynamic_programming_squared/amss.md +++ b/lectures/dynamic_programming_squared/amss.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (opt_tax_amss)= @@ -1036,14 +1036,14 @@ function solve_time1_bellman(model::Model{TR}, μgrid::AbstractArray) where {TR xprimes = repeat(x, 1, S) xgrid[s_, :] = x for sprime = 1:S - splc = CubicSpline(c[:, sprime][end:-1:1], x[end:-1:1]) - spln = CubicSpline(n[:, sprime][end:-1:1], x[end:-1:1]) - splx = CubicSpline(xprimes[:, sprime][end:-1:1], x[end:-1:1]) + splc = CubicSpline(c[:, sprime][end:-1:1], x[end:-1:1];extrapolate=true) + spln = CubicSpline(n[:, sprime][end:-1:1], x[end:-1:1];extrapolate=true) + splx = CubicSpline(xprimes[:, sprime][end:-1:1], x[end:-1:1];extrapolate=true) cf[s_, sprime] = y -> splc(y) nf[s_, sprime] = y -> spln(y) xprimef[s_, sprime] = y -> splx(y) end - splV = CubicSpline(V[end:-1:1], x[end:-1:1]) + splV = CubicSpline(V[end:-1:1], x[end:-1:1];extrapolate=true) Vf[s_] = y -> splV(y) end diff --git a/lectures/dynamic_programming_squared/dyn_stack.md b/lectures/dynamic_programming_squared/dyn_stack.md index e8c1d5d7..6a0f08f8 100644 --- a/lectures/dynamic_programming_squared/dyn_stack.md +++ b/lectures/dynamic_programming_squared/dyn_stack.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (dyn_stack)= diff --git a/lectures/dynamic_programming_squared/lqramsey.md b/lectures/dynamic_programming_squared/lqramsey.md index d42e659e..9aef62cb 100644 --- a/lectures/dynamic_programming_squared/lqramsey.md +++ b/lectures/dynamic_programming_squared/lqramsey.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (lqramsey)= diff --git a/lectures/dynamic_programming_squared/opt_tax_recur.md b/lectures/dynamic_programming_squared/opt_tax_recur.md index 2a6aea2e..93571209 100644 --- a/lectures/dynamic_programming_squared/opt_tax_recur.md +++ b/lectures/dynamic_programming_squared/opt_tax_recur.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (opt_tax_recur)= diff --git a/lectures/getting_started_julia/fundamental_types.md b/lectures/getting_started_julia/fundamental_types.md index 27134997..57e5848a 100644 --- a/lectures/getting_started_julia/fundamental_types.md +++ b/lectures/getting_started_julia/fundamental_types.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (fundamental_types)= diff --git a/lectures/getting_started_julia/getting_started.md b/lectures/getting_started_julia/getting_started.md index 01b518f8..88a6ef11 100644 --- a/lectures/getting_started_julia/getting_started.md +++ b/lectures/getting_started_julia/getting_started.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (getting_started)= diff --git a/lectures/getting_started_julia/introduction_to_types.md b/lectures/getting_started_julia/introduction_to_types.md index f756c3b2..63298324 100644 --- a/lectures/getting_started_julia/introduction_to_types.md +++ b/lectures/getting_started_julia/introduction_to_types.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (introduction_to_types)= diff --git a/lectures/getting_started_julia/julia_by_example.md b/lectures/getting_started_julia/julia_by_example.md index 18f8383a..6ba241f7 100644 --- a/lectures/getting_started_julia/julia_by_example.md +++ b/lectures/getting_started_julia/julia_by_example.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (julia_by_example)= diff --git a/lectures/getting_started_julia/julia_essentials.md b/lectures/getting_started_julia/julia_essentials.md index 29f54f4f..1a06f3ed 100644 --- a/lectures/getting_started_julia/julia_essentials.md +++ b/lectures/getting_started_julia/julia_essentials.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (julia_essentials)= diff --git a/lectures/introduction_dynamics/ar1_processes.md b/lectures/introduction_dynamics/ar1_processes.md index 72994099..dd010ab2 100644 --- a/lectures/introduction_dynamics/ar1_processes.md +++ b/lectures/introduction_dynamics/ar1_processes.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (ar1)= diff --git a/lectures/introduction_dynamics/finite_markov.md b/lectures/introduction_dynamics/finite_markov.md index b42d5ebe..66995304 100644 --- a/lectures/introduction_dynamics/finite_markov.md +++ b/lectures/introduction_dynamics/finite_markov.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (mc)= diff --git a/lectures/introduction_dynamics/kalman.md b/lectures/introduction_dynamics/kalman.md index 545aa472..522f9670 100644 --- a/lectures/introduction_dynamics/kalman.md +++ b/lectures/introduction_dynamics/kalman.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (kalman)= diff --git a/lectures/introduction_dynamics/linear_models.md b/lectures/introduction_dynamics/linear_models.md index 4cb70fd5..06199f4d 100644 --- a/lectures/introduction_dynamics/linear_models.md +++ b/lectures/introduction_dynamics/linear_models.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (lssm)= diff --git a/lectures/introduction_dynamics/scalar_dynam.md b/lectures/introduction_dynamics/scalar_dynam.md index 54a39f94..145f1532 100644 --- a/lectures/introduction_dynamics/scalar_dynam.md +++ b/lectures/introduction_dynamics/scalar_dynam.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (scalar_dynam)= diff --git a/lectures/introduction_dynamics/short_path.md b/lectures/introduction_dynamics/short_path.md index 1f77d93f..b6b60456 100644 --- a/lectures/introduction_dynamics/short_path.md +++ b/lectures/introduction_dynamics/short_path.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (short_path)= diff --git a/lectures/introduction_dynamics/wealth_dynamics.md b/lectures/introduction_dynamics/wealth_dynamics.md index d94f8043..88a8da89 100644 --- a/lectures/introduction_dynamics/wealth_dynamics.md +++ b/lectures/introduction_dynamics/wealth_dynamics.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (wd)= diff --git a/lectures/more_julia/data_statistical_packages.md b/lectures/more_julia/data_statistical_packages.md index c557eb7a..47c78737 100644 --- a/lectures/more_julia/data_statistical_packages.md +++ b/lectures/more_julia/data_statistical_packages.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (data_statistical_packages)= diff --git a/lectures/more_julia/general_packages.md b/lectures/more_julia/general_packages.md index e126c136..df61cc13 100644 --- a/lectures/more_julia/general_packages.md +++ b/lectures/more_julia/general_packages.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (general_packages)= diff --git a/lectures/more_julia/generic_programming.md b/lectures/more_julia/generic_programming.md index bdeec031..f7d4fdc4 100644 --- a/lectures/more_julia/generic_programming.md +++ b/lectures/more_julia/generic_programming.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (generic_programming)= diff --git a/lectures/more_julia/optimization_solver_packages.md b/lectures/more_julia/optimization_solver_packages.md index 5d272770..af179d55 100644 --- a/lectures/more_julia/optimization_solver_packages.md +++ b/lectures/more_julia/optimization_solver_packages.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (optimization_solver_packages)= @@ -35,7 +35,7 @@ In this lecture we introduce a few of the Julia libraries that we've found parti tags: [hide-output] --- using LinearAlgebra, Statistics -using ForwardDiff, Zygote, Optim, JuMP, Ipopt, BlackBoxOptim, Roots, NLsolve, LeastSquaresOptim +using ForwardDiff, Optim, JuMP, Ipopt, Roots, NLsolve using Optim: converged, maximum, maximizer, minimizer, iterations #some extra functions ``` @@ -222,80 +222,17 @@ dsqrt(x) = ForwardDiff.derivative(squareroot, x) dsqrt(2.0) ``` -### Zygote.jl +### Reverse-Mode AD Unlike forward-mode auto-differentiation, reverse-mode is very difficult to implement efficiently, and there are many variations on the best approach. Many reverse-mode packages are connected to machine-learning packages, since the efficient gradients of $R^N \to R$ loss functions are necessary for the gradient descent optimization algorithms used in machine learning. -One recent package is [Zygote.jl](https://github.com/FluxML/Zygote.jl), which is used in the Flux.jl framework. +At this point, Julia does not have a single consistently usable reverse-mode AD package without rough edges, but a few key ones to consider are: -```{code-cell} julia -using Zygote - -h(x, y) = 3x^2 + 2x + 1 + y * x - y -gradient(h, 3.0, 5.0) -``` - -Here we see that Zygote has a gradient function as the interface, which returns a tuple. - -You could create this as an operator if you wanted to., - -```{code-cell} julia -D(f) = x -> gradient(f, x)[1] # returns first in tuple - -D_sin = D(sin) -D_sin(4.0) -``` - -For functions of one (Julia) variable, we can find the by simply using the `'` after a function name - -```{code-cell} julia -using Statistics -p(x) = mean(abs, x) -p'([1.0, 3.0, -2.0]) -``` - -Or, using the complicated iterative function we defined for the squareroot, - -```{code-cell} julia -squareroot'(2.0) -``` - -Zygote supports combinations of vectors and scalars as the function parameters. - -```{code-cell} julia -h(x, n) = (sum(x .^ n))^(1 / n) -gradient(h, [1.0, 4.0, 6.0], 2.0) -``` - -The gradients can be very high dimensional. For example, to do a simple nonlinear optimization problem -with 1 million dimensions, solved in a few seconds. - -```{code-cell} julia -using Optim, LinearAlgebra -N = 1000000 -y = rand(N) -lambda = 0.01 -obj(x) = sum((x .- y) .^ 2) + lambda * norm(x) - -x_iv = rand(N) -function g!(G, x) - G .= obj'(x) -end - -results = optimize(obj, g!, x_iv, LBFGS()) # or ConjugateGradient() -println("minimum = $(results.minimum) with in " * - "$(results.iterations) iterations") -``` - -Caution: while Zygote is the most exciting reverse-mode AD implementation in Julia, it has many rough edges. - -- If you write a function, take its gradient, and then modify the function, you need to call `Zygote.refresh()` or else the gradient will be out of sync. This may not apply for Julia 1.3+. -- It provides no features for getting Jacobians, so you would have to ask for each row of the Jacobian separately. That said, you - probably want to use `ForwardDiff.jl` for Jacobians if the dimension of the output is similar to the dimension of the input. -- You cannot, in the current release, use mutating functions (e.g. modify a value in an array/etc.) although that feature is in progress. -- Compiling can be very slow for complicated functions. +- [ReverseDiff.jl](https://github.com/JuliaDiff/ReverseDiff.jl), a relatively dependable but limited package. Not really intended for standard ML-pipline usage +- [Zygote.jl](https://github.com/FluxML/Zygote.jl), which is flexible but buggy and less reliable. In a slow process of deprecation, but often the primary alternative. +- [Enzyme.jl](https://enzyme.mit.edu/julia/stable/), which is the most promising (and supports both forward and reverse mode). However, the usage is more tailored for scientific machine learning and scalar functions rather than fast GPU kernels, and it relies on a innovative (but not fully stable) approach to compilation. ## Optimization @@ -482,17 +419,6 @@ println("x = ", value(x), " y = ", value(y)) Another package for doing global optimization without derivatives is [BlackBoxOptim.jl](https://github.com/robertfeldt/BlackBoxOptim.jl). -To see an example from the documentation - -```{code-cell} julia -using BlackBoxOptim - -function rosenbrock2d(x) - return (1.0 - x[1])^2 + 100.0 * (x[2] - x[1]^2)^2 -end - -results = bboptimize(rosenbrock2d; SearchRange = (-5.0, 5.0), NumDimensions = 2); -``` An example for [parallel execution](https://github.com/robertfeldt/BlackBoxOptim.jl/blob/master/examples/rosenbrock_parallel.jl) of the objective is provided. @@ -586,46 +512,6 @@ If $M = N$ and we know a root $F(x^*) = 0$ to the system of equations exists, th An implementation of NLS is given in [LeastSquaresOptim.jl](https://github.com/matthieugomez/LeastSquaresOptim.jl). -From the documentation - -```{code-cell} julia -using LeastSquaresOptim -function rosenbrock(x) - [1 - x[1], 100 * (x[2] - x[1]^2)] -end -LeastSquaresOptim.optimize(rosenbrock, zeros(2), Dogleg()) -``` - -**Note:** Because there is a name clash between `Optim.jl` and this package, to use both we need to qualify the use of the `optimize` function (i.e. `LeastSquaresOptim.optimize`). - -Here, by default it will use AD with `ForwardDiff.jl` to calculate the Jacobian, -but you could also provide your own calculation of the Jacobian (analytical or using finite differences) and/or calculate the function inplace. - -```{code-cell} julia -function rosenbrock_f!(out, x) - out[1] = 1 - x[1] - out[2] = 100 * (x[2] - x[1]^2) -end -LeastSquaresOptim.optimize!(LeastSquaresProblem(x = zeros(2), - f! = rosenbrock_f!, - output_length = 2)) - -# if you want to use gradient -function rosenbrock_g!(J, x) - J[1, 1] = -1 - J[1, 2] = 0 - J[2, 1] = -200 * x[1] - J[2, 2] = 100 -end -LeastSquaresOptim.optimize!(LeastSquaresProblem(x = zeros(2), - f! = rosenbrock_f!, - g! = rosenbrock_g!, - output_length = 2)) -``` - -## Additional Notes - -Watch [this video](https://www.youtube.com/watch?v=vAp6nUMrKYg&feature=youtu.be) from one of Julia's creators on automatic differentiation. ## Exercises diff --git a/lectures/multi_agent_models/aiyagari.md b/lectures/multi_agent_models/aiyagari.md index 11ae13bb..7cfd8054 100644 --- a/lectures/multi_agent_models/aiyagari.md +++ b/lectures/multi_agent_models/aiyagari.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (aiyagari)= diff --git a/lectures/multi_agent_models/arellano.md b/lectures/multi_agent_models/arellano.md index 8b0fb7cb..28dd86bc 100644 --- a/lectures/multi_agent_models/arellano.md +++ b/lectures/multi_agent_models/arellano.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (arellano)= diff --git a/lectures/multi_agent_models/harrison_kreps.md b/lectures/multi_agent_models/harrison_kreps.md index 156ac748..70e35213 100644 --- a/lectures/multi_agent_models/harrison_kreps.md +++ b/lectures/multi_agent_models/harrison_kreps.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (harrison_kreps)= diff --git a/lectures/multi_agent_models/lake_model.md b/lectures/multi_agent_models/lake_model.md index 1e87f825..b0e43fdd 100644 --- a/lectures/multi_agent_models/lake_model.md +++ b/lectures/multi_agent_models/lake_model.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (lake_model)= diff --git a/lectures/multi_agent_models/lucas_model.md b/lectures/multi_agent_models/lucas_model.md index b5239a57..ac282a27 100644 --- a/lectures/multi_agent_models/lucas_model.md +++ b/lectures/multi_agent_models/lucas_model.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (lucas_asset)= diff --git a/lectures/multi_agent_models/markov_asset.md b/lectures/multi_agent_models/markov_asset.md index 27bc9878..68723095 100644 --- a/lectures/multi_agent_models/markov_asset.md +++ b/lectures/multi_agent_models/markov_asset.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (mass)= diff --git a/lectures/multi_agent_models/markov_perf.md b/lectures/multi_agent_models/markov_perf.md index a7b61d10..e70da347 100644 --- a/lectures/multi_agent_models/markov_perf.md +++ b/lectures/multi_agent_models/markov_perf.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (markov_perf)= diff --git a/lectures/multi_agent_models/matsuyama.md b/lectures/multi_agent_models/matsuyama.md index 3153335a..b0ac9108 100644 --- a/lectures/multi_agent_models/matsuyama.md +++ b/lectures/multi_agent_models/matsuyama.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (matsuyama)= diff --git a/lectures/multi_agent_models/rational_expectations.md b/lectures/multi_agent_models/rational_expectations.md index 4c3d9fe1..9a752c52 100644 --- a/lectures/multi_agent_models/rational_expectations.md +++ b/lectures/multi_agent_models/rational_expectations.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (ree)= diff --git a/lectures/multi_agent_models/schelling.md b/lectures/multi_agent_models/schelling.md index 868aed51..3ef8929a 100644 --- a/lectures/multi_agent_models/schelling.md +++ b/lectures/multi_agent_models/schelling.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (schelling)= diff --git a/lectures/multi_agent_models/uncertainty_traps.md b/lectures/multi_agent_models/uncertainty_traps.md index a637b118..dbfc2343 100644 --- a/lectures/multi_agent_models/uncertainty_traps.md +++ b/lectures/multi_agent_models/uncertainty_traps.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (uncertainty_traps)= diff --git a/lectures/software_engineering/need_for_speed.md b/lectures/software_engineering/need_for_speed.md index 22ff0864..b54b0112 100644 --- a/lectures/software_engineering/need_for_speed.md +++ b/lectures/software_engineering/need_for_speed.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (types_methods)= diff --git a/lectures/software_engineering/testing.md b/lectures/software_engineering/testing.md index 955cf081..3d3824b4 100644 --- a/lectures/software_engineering/testing.md +++ b/lectures/software_engineering/testing.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (testing)= diff --git a/lectures/software_engineering/tools_editors.md b/lectures/software_engineering/tools_editors.md index 7291bb65..07e62c1c 100644 --- a/lectures/software_engineering/tools_editors.md +++ b/lectures/software_engineering/tools_editors.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (tools_editors)= diff --git a/lectures/software_engineering/version_control.md b/lectures/software_engineering/version_control.md index 270ee489..2dfc8788 100644 --- a/lectures/software_engineering/version_control.md +++ b/lectures/software_engineering/version_control.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (version_control)= diff --git a/lectures/status.md b/lectures/status.md index f1780a67..d87f405c 100644 --- a/lectures/status.md +++ b/lectures/status.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- # Execution Statistics diff --git a/lectures/time_series_models/additive_functionals.md b/lectures/time_series_models/additive_functionals.md index 5d4bde7c..fc836e92 100644 --- a/lectures/time_series_models/additive_functionals.md +++ b/lectures/time_series_models/additive_functionals.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (additive_functionals)= diff --git a/lectures/time_series_models/arma.md b/lectures/time_series_models/arma.md index 2edcefb7..35498a51 100644 --- a/lectures/time_series_models/arma.md +++ b/lectures/time_series_models/arma.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (arma)= diff --git a/lectures/time_series_models/classical_filtering.md b/lectures/time_series_models/classical_filtering.md index 1666ab21..87df5026 100644 --- a/lectures/time_series_models/classical_filtering.md +++ b/lectures/time_series_models/classical_filtering.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (classical_filtering)= diff --git a/lectures/time_series_models/estspec.md b/lectures/time_series_models/estspec.md index 83d5cd78..9f468e9f 100644 --- a/lectures/time_series_models/estspec.md +++ b/lectures/time_series_models/estspec.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (estspec)= diff --git a/lectures/time_series_models/lu_tricks.md b/lectures/time_series_models/lu_tricks.md index 24856a5b..c517f5eb 100644 --- a/lectures/time_series_models/lu_tricks.md +++ b/lectures/time_series_models/lu_tricks.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (lu_tricks)= diff --git a/lectures/time_series_models/multiplicative_functionals.md b/lectures/time_series_models/multiplicative_functionals.md index 575c421e..6f114691 100644 --- a/lectures/time_series_models/multiplicative_functionals.md +++ b/lectures/time_series_models/multiplicative_functionals.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (multiplicative_functionals)= diff --git a/lectures/tools_and_techniques/geom_series.md b/lectures/tools_and_techniques/geom_series.md index 362026c5..814be925 100644 --- a/lectures/tools_and_techniques/geom_series.md +++ b/lectures/tools_and_techniques/geom_series.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (mc)= diff --git a/lectures/tools_and_techniques/iterative_methods_sparsity.md b/lectures/tools_and_techniques/iterative_methods_sparsity.md index 48fe8f1d..58d5dcd8 100644 --- a/lectures/tools_and_techniques/iterative_methods_sparsity.md +++ b/lectures/tools_and_techniques/iterative_methods_sparsity.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (iterative_methods_sparsity)= @@ -1299,35 +1299,4 @@ function stationary_psi(p) end p = default_params(; N = 10, M = 5) @btime stationary_psi($p); -``` - -As a final demonstration, consider calculating the full evolution of the $psi(t)$ Markov chain. For the constant -$Q'$ matrix, the solution to this system of equations is $\psi(t) = \exp(Q') \psi(0)$ - -Matrix-free Krylov methods using a technique called [exponential integration](https://en.wikipedia.org/wiki/Exponential_integrator) can solve this for high-dimensional problems. - -For this, we can set up a `MatrixFreeOperator` for our `Q_T_mul!` function (equivalent to the `LinearMap`, but with some additional requirements for the ODE solver) and use the [LinearExponential](http://docs.juliadiffeq.org/latest/solvers/ode_solve.html#Exponential-Methods-for-Linear-and-Affine-Problems-1) time-stepping method. - -```{code-cell} julia -using OrdinaryDiffEq, DiffEqOperators - -function solve_transition_dynamics(p, t) - (; N, M) = p - - psi_0 = [1.0; fill(0.0, N^M - 1)] - O! = MatrixFreeOperator((dpsi, psi, p, t) -> Q_T_mul!(dpsi, psi, p), (p, 0.0), - size = (N^M, N^M), opnorm = (p) -> 1.25) - - # define the corresponding ODE problem - prob = ODEProblem(O!, psi_0, (0.0, t[end]), p) - return solve(prob, LinearExponential(krylov = :simple), tstops = t) -end -t = 0.0:5.0:100.0 -p = default_params(; N = 10, M = 6) -sol = solve_transition_dynamics(p, t) -v = solve_bellman(p) -plot(t, [dot(sol(tval), v) for tval in t], xlabel = L"t", label = L"E_t(v)") -``` - -The above plot (1) calculates the full dynamics of the Markov chain from the $n_m = 1$ for all $m$ initial condition; (2) solves the dynamics of a system of a million ODEs; and (3) uses the calculation of the Bellman equation to find the expected valuation during that transition. The entire process takes less than 30 seconds. - +``` \ No newline at end of file diff --git a/lectures/tools_and_techniques/linear_algebra.md b/lectures/tools_and_techniques/linear_algebra.md index 10f9689e..ddc3eb14 100644 --- a/lectures/tools_and_techniques/linear_algebra.md +++ b/lectures/tools_and_techniques/linear_algebra.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (linear_algebra)= diff --git a/lectures/tools_and_techniques/lln_clt.md b/lectures/tools_and_techniques/lln_clt.md index 63a17b22..22c09344 100644 --- a/lectures/tools_and_techniques/lln_clt.md +++ b/lectures/tools_and_techniques/lln_clt.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (lln_clt)= diff --git a/lectures/tools_and_techniques/numerical_linear_algebra.md b/lectures/tools_and_techniques/numerical_linear_algebra.md index 19d93766..f4cda6f9 100644 --- a/lectures/tools_and_techniques/numerical_linear_algebra.md +++ b/lectures/tools_and_techniques/numerical_linear_algebra.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (numerical_linear_algebra)= @@ -494,7 +494,7 @@ Af = qr(A) Q = Af.Q R = [Af.R; zeros(N - M, M)] # Stack with zeros @show Q * R ≈ A -x = R \ Q' * b # simplified QR solution for least squares +x = R \ Matrix(Q)' * b # simplified QR solution for least squares ``` This stacks the `R` with zeros, but the more specialized algorithm would not multiply directly diff --git a/lectures/tools_and_techniques/orth_proj.md b/lectures/tools_and_techniques/orth_proj.md index 92d5e7b5..fb730798 100644 --- a/lectures/tools_and_techniques/orth_proj.md +++ b/lectures/tools_and_techniques/orth_proj.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (orth_proj)= diff --git a/lectures/tools_and_techniques/stationary_densities.md b/lectures/tools_and_techniques/stationary_densities.md index ffc3292e..4d903c2b 100644 --- a/lectures/tools_and_techniques/stationary_densities.md +++ b/lectures/tools_and_techniques/stationary_densities.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (statd)= diff --git a/lectures/troubleshooting.md b/lectures/troubleshooting.md index 94277480..febb508b 100644 --- a/lectures/troubleshooting.md +++ b/lectures/troubleshooting.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (troubleshooting)= diff --git a/lectures/zreferences.md b/lectures/zreferences.md index 54a244a3..3b982ed8 100644 --- a/lectures/zreferences.md +++ b/lectures/zreferences.md @@ -6,7 +6,7 @@ jupytext: kernelspec: display_name: Julia language: julia - name: julia-1.9 + name: julia-1.10 --- (references)=