validate workflow runs #7
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: build containers and run tests | |
| #todo: change this to an on_pullrequest trigger only to main branch | |
| on: | |
| pull_request: | |
| branches: | |
| - '*' | |
| jobs: | |
| Setup_and_build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup Mamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| cache-environment: true | |
| post-cleanup: 'all' | |
| environment-file: env.yml | |
| init-shell: bash | |
| - name: Install local python package | |
| run: | | |
| pip install . --no-deps | |
| shell: micromamba-shell {0} | |
| - name: build containers | |
| run: | | |
| python containers/build_containers.py | |
| env: | |
| TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| shell: micromamba-shell {0} | |
| - name: zip built containers | |
| run: | | |
| cd ./containers/ | |
| tar -czvf containers.tar.gz builtcontainers.json $(find . -type f -name "*.tar" -printf '%f ') | |
| - name: Upload container artifacts | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: built_containers | |
| path: ./containers/containers.tar.gz | |
| Test: | |
| runs-on: ubuntu-latest | |
| needs: Setup_and_build | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/download-artifact@v3 | |
| with: | |
| name: built_containers | |
| - name: move artifact | |
| run: | | |
| mv ./containers.tar.gz ./containers/containers.tar.gz | |
| - name: unzip built containers | |
| run: | | |
| cd ./containers/ | |
| tar -xzvf containers.tar.gz | |
| cd .. | |
| - name: Setup Apptainer | |
| uses: eWaterCycle/setup-apptainer@v2 | |
| - name: Setup Mamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| cache-environment: true | |
| post-cleanup: 'all' | |
| environment-file: env.yml | |
| init-shell: bash | |
| - name: Install local python package | |
| run: | | |
| pip install . --no-deps | |
| shell: micromamba-shell {0} | |
| - name: convert containers | |
| run: | | |
| python containers/convert_artifact_containers_for_apptainer.py | |
| - name: download existing containers | |
| run: | | |
| python containers/pull_published_containers.py | |
| shell: micromamba-shell {0} | |
| ## rest of the testing suite here |