week5.Rmd

---
title: "Week 5: Intro to R packages"
output:
  html_document:
    toc: true
    toc_depth: 3
    include:
      after_body: footer.html
---

```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE, error=TRUE)
```

## Intro to R packages

* [Lecture Video](https://youtu.be/LWWfRlyBbVs)
* [The lecture notes](week5-introtopackages.html)

## Notes from Q&A

* [GitHub info on large files](https://docs.github.com/en/github/managing-large-files/working-with-large-files/conditions-for-large-files)

## Helpful NOAA resources

* [NMFS Openscapes Wiki](https://github.com/nmfs-openscapes/.github/wiki)
* [FIT Resources](https://github.com/nmfs-fish-tools/Resources) License, disclaimer and NOAA footer for your packages here.
* [FIT Resources blog](https://noaa-fisheries-integrated-toolbox.github.io/resources/) Scroll down the navbar on left to see coding resources.
* [Package review template](https://github.com/nmfs-general-modeling-tools/nmfs-general-modeling-tools.github.io/blob/master/.github/ISSUE_TEMPLATE/r-package-code-review.md) 
* [FIT NOAA Themed pkgdown](https://noaa-fisheries-integrated-toolbox.github.io/resources/workshops/NOAA-pkgdown/)
* [Code Testing](https://noaa-fisheries-integrated-toolbox.github.io/resources/best-practices/code-testing/)
* [Code review](https://noaa-fisheries-integrated-toolbox.github.io/resources/best-practices/code-review/)

## Example R packages

* [MyNewPackage](https://github.com/RWorkflow-Workshop-2021/MyNewPackage) The package I made during class. You can also open on [RStudio Cloud](https://rstudio.cloud/project/2574138) and build it from there.
* [VRData](https://nwfsc-math-bio.github.io/VRData/) This is the data package that I spent the most time on in lecture.
* [many NOAA examples](https://github.com/nmfs-openscapes/.github/wiki/02-GitHub-in-Government#github-in-noaa--nmfs)