This repository contains various projects from the Applied Plant Breeding and Microbial Biotechnology Lab, showcasing research and analysis conducted in plant breeding and microbial studies.
Analysis pipeline for amplicon sequencing from environmental samples at Elhamra, focusing on microbial diversity and population structures.
Study on bread wheat quality assessment, focusing on phenotypic and genotypic traits for improved breeding selection.
Shotgun metagenomic analysis of environmental samples from Elhamra, examining community structure and functional genomics.
Transcriptome analysis for Spodoptera littoralis, with scripts for differential expression analysis and data processing.
RNA-Seq project for GMO detection in sesame, including variant calling and transcriptomic data analysis.
- R: 66.9%
- Python: 17.7%
- Shell: 15.4%
For more details on each project, explore the corresponding folders.