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environmentWrite.js
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environmentWrite.js
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var av = av || {}; // variable exists; this just lets the ide konw that av is defnined
var dijit = dijit || {}; //variable exists; this just lets the ide konw that dijit is defnined
////Find subarea based on region code
//-------------------------------------------------------------------------------------- av.fwt.getInflowRegionArea --
av.fwt.getInflowRegionArea = function(numTsk, subnum) {
var ndx = av.nut[numTsk].uiSub.regionNdx[subnum];
var cols = Math.floor(av.nut.wrldCols * av.sgr.regionQuarterCols[ndx]);
var rows = Math.floor(av.nut.wrldRows * av.sgr.regionQuarterRows[ndx]);
//console.log('tsk=', numTsk, '; subnum=', subnum,'; ndx=', ndx, '; cols=', cols, '; rows=', rows);
// if the number of rows or cols is odd, then one half will get an extra row/col in that direction
if(0 != av.nut.wrldCols % 2) {
cols += av.sgr.regionQuarterColsAdd[1];
}
if (0 != av.nut.wrldRows %2 ) {
rows += av.sgr.regionQuarterRowsAdd[1];
};
var rslt = {
area : rows*cols,
cols : cols,
rows : rows,
boxx : Math.floor(av.nut.wrldCols * av.sgr.regionQuarterBoxx[ndx]),
boxy : Math.floor(av.nut.wrldRows * av.sgr.regionQuarterBoxy[ndx])
};
return (rslt);
};
//---------------------------------------------------------------------------------- end av.fwt.getInflowRegionArea --
av.fwt.existDfltCheck = function(str, data, dfltTxt, avidaDefault){
if (':depletable=' == str )
var text = '';
if (null != data) {
text = data;
}
else if (null != dfltTxt) {
text = dfltTxt;
};
//console.log('str=', str, '; data=', data, '; dfltTxt=', dfltTxt, '; avidaDefault=', avidaDefault,'; text=', text, '-------- are they equal?-----');
if (text == avidaDefault) {
text = '';
}
else if (null != str) {
text = str + text;
};
//if (':depletable=' == str ) {
if (false) {
console.log('in av.fwt.existDfltCheck: str=', str, '; data=', data, '; dfltTxt='+dfltTxt+'; avidaDefault='+avidaDefault
+'; text=', text);
}
return text;
};
//----------------------------------------------------------------------------------------------- av.fwt.existCheck --
av.fwt.existCheck = function(str, data, dfltTxt){
var text = '';
if (null != data) {
text = data;
}
else if (null != dfltTxt) {
text = dfltTxt;
}
else {
return '';
}
if (null != str) {
text = str + text;
}
if (':value=' == str) {
//console.log('in av.fwt.existCheck: str=', str, '; data=', data, '; dfltTxt='+dfltTxt+'; text='+text+'|');
}
return text;
};
//--------------------------------------------------------------------------------------- av.fwt.setResourceConstants --
// clears data for three row data table for resources in the stats panel on the population page.
av.fwt.clearResourceConstants = function(from) {
var tskTitle;
av.nut.resrcTyp = av.sgr.resrcTyp;
// console.log(from,'called av.fwt.clearResourceConstants: resource type =', av.nut.resrcTyp);
for (var ii=0; ii < av.sgr.numTasks; ii++) {
tskTitle = av.sgr.logicTitleNames[ii];
document.getElementById('cell'+tskTitle).innerHTML = '';
document.getElementById('mx'+tskTitle).innerHTML = '';
document.getElementById('tot'+tskTitle).innerHTML = '';
}
};
av.fwt.setResourceConstants = function() {
var logLen = av.sgr.logicNames.length;
var numTsk;
var tskTitle;
av.nut.cntGlobalDataTasks = 0;
//console.log('resource type =', av.nut.resrcTyp);
for (var ii=0; ii < logLen; ii++) {
numTsk = av.sgr.logEdNames[ii];
tskTitle = av.sgr.logicTitleNames[ii];
//console.log('numTsk', numTsk, '; nut_resr type =', av.nut[numTsk].uiAll.supplyTypeSlct);
document.getElementById('cell'+tskTitle).innerHTML = ' '; //Type
document.getElementById('mx'+tskTitle).innerHTML = ' ';
document.getElementById('tot'+tskTitle).innerHTML = ' '; //Amount
//console.log('tsk=', numTsk, '; geo=', av.nut[numTsk].uiAll.geometry.toLowerCase() );
if ( 'global' == av.nut[numTsk].uiAll.geometry.toLowerCase() ) {
if ('unlimited' == av.nut.resrcTyp[ii] ) {
document.getElementById('cell'+tskTitle).innerHTML = 'U';
document.getElementById('mx'+tskTitle).innerHTML = '∞ '; //&infin is infinity symbol
document.getElementById('tot'+tskTitle).innerHTML = '∞ '; //&infin is infinity symbol
} else if ('none' == av.nut.resrcTyp[ii].toLowerCase() ) {
document.getElementById('cell'+tskTitle).innerHTML = 'N';
document.getElementById('mx'+tskTitle).innerHTML = '-';
document.getElementById('tot'+tskTitle).innerHTML = '-';
} else {
document.getElementById('mx'+tskTitle).innerHTML = '+';
document.getElementById('tot'+tskTitle).innerHTML = '+';
av.nut.cntGlobalDataTasks++;
if ('limited' == av.nut.resrcTyp[ii].toLowerCase() ) {
// if ('limited' == av.nut[numTsk].uiAll.supplyTypeSlct.toLowerCase() ) {
document.getElementById('cell'+tskTitle).innerHTML = 'L';
} else {
document.getElementById('cell'+tskTitle).innerHTML = 'C';
}
};
} else {
// grid
document.getElementById('tot'+tskTitle).innerHTML = 'Grid ';
document.getElementById('cell'+tskTitle).innerHTML = ' ';
if (1 >= av.nut[numTsk].uiAll.regionsNumOf ) {
if ('unlimited' == av.nut.resrcTyp[ii] ) {
document.getElementById('cell'+tskTitle).innerHTML = 'unlim';
document.getElementById('mx'+tskTitle).innerHTML = 'unlim';
} else {
document.getElementById('cell'+tskTitle).innerHTML = '0 ';
document.getElementById('mx'+tskTitle).innerHTML = '0 ';
}
};
}; // end of else grid
}; // end of loop thru tasks
//console.log('av.nut.cntGlobalDataTasks=', av.nut.cntGlobalDataTasks);
};
//----------------------------------------------------------------------------------- av.fwt.setResourceGridDisplay --
av.fwt.setResourceGridDisplay = function (from) {
console.log(from, 'called av.fwt.setResourceGridDisplay');
var hideFlag = [false, false, false, false, false, false, false, false, false];
var hideResourceGrid = true; // hide resource grid when true. Show grid when false.
var numTsk = '0not';
var supplyType = 'other';
for (var ii=1; ii < av.sgr.numTasks; ii++) {
numTsk = av.sgr.logEdNames[ii];
if ('global' == av.nut[numTsk].uiAll.geometry.toLowerCase()) {
supplyType = av.nut[numTsk].uiAll.supplyTypeSlct.toLowerCase();
if ('unlimited' == supplyType || 'none' == supplyType) {
hideFlag[ii] = true;
};
};
//console.log('hideFlag['+ii+'] =', hideFlag[ii]);
hideResourceGrid = hideResourceGrid && hideFlag[ii];
} // end of for loop.
console.log(from, 'called av.fwt.setResourceGridDisplay: hideResourceGrid is', hideResourceGrid);
if (hideResourceGrid) {
//document.getElementById('resrceDataHolder').style.display = 'none';
//document.getElementById('resrceDataHolder').style.visibility = 'hidden';
document.getElementById('resourceDataGrid').class = 'visibility_hidden';
} else {
//there is some spatial data so show that.
document.getElementById('resrceDataHolder').style.display = 'inline-block';
//document.getElementById('resrceDataHolder').style.visibility = 'hidden';
document.getElementById('resourceDataGrid').class = 'sugarGlobal-gridContainer';
// document.getElementById('resrceDataHolder').style.display = 'block';
// document.getElementById('resrceDataHolder').style.visibility = 'visible';
// document.getElementById('resourceDataGrid').class = 'sugarGlobal-gridContainer';
}
};
//------------------------------------------------------------------------------------ av.fwt.makeFzrEnvironmentCfg --
av.fwt.makeFzrEnvironmentCfg = function (idStr, toActiveConfigFlag, from) {
'use strict';
if (av.debug.fio) console.log(from, ' called av.fwt.makeFzrEnvironmentCfg; idStr=', idStr);
console.log(from, ' called av.fwt.makeFzrEnvironmentCfg; idStr=', idStr);
av.fwt.dom2nutUIfields('av.fwt.makeFzrEnvironmentCfg');
av.fwt.nutUI2cfgStructure('av.fwt.makeFzrEnvironmentCfg');
av.fwt.setResourceGridDisplay('av.fwt.makeFzrEnvironmentCfg');
console.log('before calling av.fwt.nut2cfgFile');
av.fwt.nut2cfgFile(idStr, toActiveConfigFlag, 'av.fwt.makeFzrEnvironmentCfg');
console.log('after calling av.fwt.nut2cfgFile');
av.fwt.setResourceConstants();
};
//------------------------------------------------------------------------------------------ av.fwt.dom2nutUIfields --
//convert dom data into nutUI data fields
av.fwt.dom2nutUIfields = function (from) {
av.fzr.clearEnvironment('av.fwt.dom2nutUIfields');
av.nut.wrldCols = Number(av.dom.sizeCols.value);
av.nut.wrldRows = Number(av.dom.sizeRows.value);
av.nut.wrldSize = av.nut.wrldCols * av.nut.wrldRows;
//------------------------------------------------------ assign ui parameters first --
var tsk; //name of a task with 3 letters
var numTsk; //number prefix to put in Avida-ED order before 3 letter prefix
var tskVar; // avida uses variable length logic9 names
var arguDom; // argument name in the Dom
var arguDish; // arugment name in the nutrient structure (nut); which is also the arugment name in the environment.cfg file
var logiclen = av.sgr.logicNames.length;
var area = 1;
var uiAllDishLen = av.sgr.ui_allDish_argu.length;
var uiAllDomLen = av.sgr.ui_allDom_argu.length;
var uiSubDom_numLen = av.sgr.uiSubDom_num.length;
var uiSub_checkLen = av.sgr.uiSub_Check.length;
var uiSubDom_txtLen = av.sgr.uiSubDom_txt.length;
var tmpNum = 1;
var regionLayout = '';
var ndx = 1;
var react_arguLen = av.sgr.react_argu.length;
var rslt;
var kk=0; // index into uiSub
var subBegin= 0; //must be positive
var subEnd = av.nut.numRegionsinHTML; // cannot be more than the number of html slots
if (false) {
console.log(from,'called av.fwt.dom2nutUIfields: react_arguLen=',react_arguLen,
';aiAlDishLen=',uiAllDishLen,'; uiAllDomLen=', uiAllDomLen, '; uiSubdom_numLen=', uiSubDom_numLen,
'; uiSub_checkLen=', uiSub_checkLen, '; uiSubDom_txtLen=', uiSubDom_txtLen);
}
for (var ii=0; ii< logiclen; ii++) { //9
numTsk = av.sgr.logEdNames[ii]; //puts names in order they are on avida-ed user interface
tsk = av.sgr.logicNames[ii]; //3 letter logic names
tskVar = av.sgr.logicVnames[ii]; // variable length logic tasks names as required by Avida
//argument lists to hold data relevant to getting data from dom
for (jj=0; jj < uiAllDomLen; jj++) {
arguDom = av.sgr.ui_allDom_argu[jj];
//console.log('ii='+ii+'; jj='+jj, '; av.nut['+numTsk+'].uiAll['+arguDom+']=', 'dom of', tsk+'_'+arguDom);
//console.log('domList length=', uiAllDomLen,'; value=',document.getElementById(tsk+'_'+arguDom).value);
av.nut[numTsk].uiAll[arguDom] = document.getElementById(tsk+'_'+arguDom).value;
//console.log('av.nut['+numTsk+'].uiAll['+arguDom+']=');
//console.log(av.nut[numTsk].uiAll[arguDom]);
};
regionLayout = document.getElementById(tsk+'_regionLayout').value;
av.nut[numTsk].uiAll.regionLayout = regionLayout;
//console.log('numTsk=', numTsk, '; regionLayout=', regionLayout);
av.nut[numTsk].uiAll.regionsNumOf = regionLayout[0];
ndx = av.sgr.regionLayoutValues.indexOf(regionLayout);
if ('1Global' == regionLayout) {
av.nut[numTsk].uiAll.geometry = 'global';
}
else {
av.nut[numTsk].uiAll.geometry = 'grid';
}
subBegin = av.sgr.regionQuarterSubBeg[ndx];
subEnd = av.sgr.regionQuarterSubEnd[ndx];
//console.log('numTsk=', numTsk, '; regionLayout=', regionLayout, '; ndx=', ndx, ';subBegin=', subBegin, '; subEnd=', subEnd);
//start on the potential subdishes next
for (var nn=subBegin; nn <= subEnd; nn++) {
//seemed to have inconsistent error, but it went away. left the debug console.logs for now
//console.log('regionLayout = av.nut['+numTsk+'].uiAll.regionLayout=', av.nut[numTsk].uiAll.regionLayout);
//console.log('av.nut['+numTsk+'].uiSub.regionName['+nn+']=', av.nut[numTsk].uiSub.regionName[nn]);
//console.log('av.sgr.name['+regionLayout+']['+nn+']=', av.sgr.name[regionLayout][nn]);
av.nut[numTsk].uiSub.regionName[nn] = av.sgr.name[regionLayout][nn];
//tmptext = av.sgr.name[regionLayout][nn];
//av.nut[numTsk].uiSub.regionName[nn] = tmpText;
//console.log('av.nut['+numTsk+'].uiSub.regionName['+nn+']=', av.nut[numTsk].uiSub.regionName[nn]);
ndx = av.sgr.regionQuarterNames.indexOf(av.sgr.name[regionLayout][nn]);
av.nut[numTsk].uiSub.regionNdx[nn] = ndx;
av.nut[numTsk].uiSub.regionCode[nn] = av.sgr.regionQuarterCodes[ndx];
//av.nut[numTsk].uiSub.area[nn] = av.nut.wrldCols * av.sgr.regionQuarterCols[ndx]
// * av.nut.wrldRows * av.sgr.regionQuarterRows[ndx];
rslt = av.fwt.getInflowRegionArea(numTsk, nn);
av.nut[numTsk].uiSub.area[nn] = rslt.area;
av.nut[numTsk].resrc.boxcol[nn] = rslt.cols;
av.nut[numTsk].resrc.boxrow[nn] = rslt.rows;
av.nut[numTsk].resrc.boxx[nn] = rslt.boxx;
av.nut[numTsk].resrc.boxy[nn] = rslt.boxy;
//console.log('av.nut['+numTsk+'].resrc.boxx['+nn+']; boxy =', av.nut[numTsk].resrc.boxx[nn], ';', av.nut[numTsk].resrc.boxy[nn]);
// error in this section - I think just does not work in summary section
//Need to fine area of subregions first.
for (jj=0; jj< uiSubDom_numLen; jj++) {
arguDom = av.sgr.uiSubDom_num[jj];
//console.log('jj='+jj, '; av.nut['+numTsk+'].uiSub['+arguDom+']['+nn+']=', 'dom of', '|'+tsk+nn+arguDom+'|');
//console.log('; dom=',document.getElementById(tsk+nn+arguDom).value );
if (av.utl.isNumber(Number(document.getElementById(tsk+nn+arguDom).value))) {
tmpNum = Number(document.getElementById(tsk+nn+arguDom).value);
if ('in' == arguDom.substr(0,2)) {
tmpNum = tmpNum / area; //need to find area first
};
av.nut[numTsk].uiSub[arguDom][nn] = tmpNum;
}
}; //end uiSubDom_num for loop (jj)
/* no longer using check boxes; I have not yet implemented the new select box
for (jj=0; jj< uiSub_checkLen; jj++) {
arguDom = av.sgr.uiSub_Check[jj];
console.log('jj='+jj, '; av.nut['+numTsk+'].uiSub['+arguDom+']['+nn+']=', 'dom of', '|'+tsk+nn+arguDom+'|');
console.log('; dom=',document.getElementById(tsk+nn+arguDom).checked );
av.nut[numTsk].uiSub[arguDom][nn] = document.getElementById(tsk+nn+arguDom).checked;
};
*/
if (0 == nn) {
if ('sgrBasic' == av.sgr.complexityLevel) {
av.nut[numTsk].uiSub.supplyTypeSlct[nn] = document.getElementById(tsk+'WsupplyTypeSlct').value;
} else {
av.nut[numTsk].uiSub.supplyTypeSlct[nn] = document.getElementById(tsk+'_supplyTypeSlct').value;
if ('limited' == av.nut[numTsk].uiSub.supplyTypeSlct[nn].toLowerCase() ) {
tmpNum = parseFloat(document.getElementById(tsk+'_supplyTypeSlct').value);
if ( av.utl.isNumber(tmpNum) ) {
av.nut[numTsk].resrc.inflowHi[nn] = tmpNum * av.nut.wrld.size;
}
}
}
//resource for this task is not global
} else {
av.nut[numTsk].uiSub['supplyTypeSlct'][nn] = document.getElementById(tsk+nn+'supplyTypeSlct').value;
av.nut[numTsk].uiSub['hiSide'][nn] = document.getElementById(tsk+nn+'hiSide').value;
}
}; //end for subDishes
}; //end for ii
if (true) {
console.log('------------------------------------------------------------------ Now write nutrient structure --');
av.nut_ui = {};
av.nut_ui = JSON.parse(JSON.stringify(av.nut));
console.log('av.nut_ui = ', av.nut_ui);
console.log('----------------------------------------------End of av.fwt.dom2nutUIfields, when called by ', from);
}
};
//----------------------------------------------------------------------------------- End of av.fwt.dom2nutUIfields --
//-------------------------------------------------------------------------------------- av.fwt.nutUI2cfgStructure --
// This function takes values in the uiAll and uiSub substructures and creates the data for the parameters that are
// needed to write the evironment file. Iniital and inflow amounts are per cell in the ui and total aount in the environment
// in the RESOURCE and CELLS statements.
av.fwt.nutUI2cfgStructure = function (from) {
//console.log(from, 'called av.fwt.nutUI2cfgStructure');
//------ assign ui parameters first --
var tsk; //name of a task with 3 letters
var numTsk; //number prefix to put in Avida-ED order before 3 letter prefix
var tskVar; // avida uses variable length logic9 names
var logiclen = av.sgr.logicNames.length;
var tmpNum = 1;
var regionLayout = '';
var ndx = 1;
var jj = 0;
var react_arguLen = av.sgr.react_argu.length;
console.log('world col, row, area=', av.nut.wrldCols, av.nut.wrldRows, av.nut.wrldSize);
for (var ii=0; ii< logiclen; ii++) { //9
numTsk = av.sgr.logEdNames[ii]; //puts names in order they are on avida-ed user interface
tsk = av.sgr.logicNames[ii]; //3 letter logic names
tskVar = av.sgr.logicVnames[ii]; // variable length logic tasks names as required by Avida
if ('global' == av.nut[numTsk].uiAll.geometry.toLowerCase() ) {
jj = 0;
av.nut[numTsk].resrc.geometry[jj] = av.nut[numTsk].uiAll.geometry;
av.nut[numTsk].resrc.boxflag[jj] = false;
// Start with default Avida-ED values for reactoins. re-writen with dictionary.
for (var ll = 0; ll < react_arguLen; ll++) {
av.nut[numTsk].react[ av.sgr.react_argu[ll] ][jj] = av.sgr.reAct_edValu_d[av.sgr.react_argu[ll]];
}
//sconsole.log('av.nut['+numTsk+'].react', av.nut[numTsk].react);
av.nut[numTsk].react.value[jj] = av.sgr.reactValues[ii];
av.nut[numTsk].react.name[jj] = tsk+'000';
av.nut[numTsk].react.task[jj] = tskVar;
//console.log('numTsk =', numTsk,'; av.nut[numTsk].react=', av.nut[numTsk].react);
//inflow and outflow coordinates are the same for most suppply Types
av.nut[numTsk].resrc.inflowx1[jj] = 0;
av.nut[numTsk].resrc.inflowy1[jj] = 0;
av.nut[numTsk].resrc.outflowx1[jj] = 0;
av.nut[numTsk].resrc.outflowy1[jj] = 0;
av.nut[numTsk].resrc.inflowx2[jj] = av.nut.wrldCols-1;
av.nut[numTsk].resrc.inflowy2[jj] = av.nut.wrldRows-1;
av.nut[numTsk].resrc.outflowx2[jj] = av.nut.wrldCols-1;
av.nut[numTsk].resrc.outflowy2[jj] = av.nut.wrldRows-1;
//console.log('av.nut['+numTsk+'].uiAll.supplyTypeSlct=', av.nut[numTsk].uiAll.supplyTypeSlct);
switch ( av.nut[numTsk].uiAll.supplyTypeSlct.toLowerCase() ) {
case 'none':
av.nut[numTsk].react.value[0] = 0;
break;
case 'unlimited':
av.nut[numTsk].react.depletable[0] = 0;
break;
case 'limited':
av.nut[numTsk].resrc.initial[jj] = av.nut[numTsk].uiAll.initialHiNp;
av.nut[numTsk].react.resource[0] = tsk+'000';
break;
case 'chemostat':
av.nut[numTsk].react.resource[0] = tsk+'000';
av.nut[numTsk].resrc.inflow[jj] = av.nut[numTsk].uiSub.inflowHiNp[jj]*av.nut.wrldSize;
av.nut[numTsk].resrc.outflow[jj] = av.nut[numTsk].uiSub.outflowHiNp[jj];
break;
}
}
else {
// 'Local' or 'grid'
len = av.nut[numTsk].uiSub.regionCode.length;
for (jj=1; jj< len; jj++) {
// Start with default Avida-ED values for reactions. re-writen with dictionary.
for (var ll = 0; ll < react_arguLen; ll++) {
av.nut[numTsk].react[ av.sgr.react_argu[ll] ][jj] = av.sgr.reAct_edValu_d[av.sgr.react_argu[ll]];
};
av.nut[numTsk].react.value[jj] = av.sgr.reactValues[ii];
av.nut[numTsk].react.name[jj] = av.nut[numTsk].resrc.name[jj];
av.nut[numTsk].react.resource[jj] = av.nut[numTsk].resrc.name[jj];
av.nut[numTsk].react.task[jj] = tskVar;
av.nut[numTsk].resrc.boxflag[jj] = true;
av.nut[numTsk].resrc.geometry[jj] = av.nut[numTsk].uiAll.geometry.toLowerCase();
av.nut[numTsk].resrc.name[jj] = tsk + av.nut[numTsk].uiSub.regionCode[jj]+'q';
if (av.nut[numTsk].uiSub.diffuseCheck[jj]) {
av.nut[numTsk].resrc.xdiffuse[jj] = 1;
av.nut[numTsk].resrc.ydiffuse[jj] = 1;
}
else {
av.nut[numTsk].resrc.xdiffuse[jj] = 0;
av.nut[numTsk].resrc.ydiffuse[jj] = 0;
};
//ndx = av.sgr.regionQuarterNames.indexOf(av.nut[numTsk].uiSub.regionName[jj]);
//inflow and outflow coordinates are the same for most suppply Types
av.nut[numTsk].resrc.inflowx1[jj] = av.nut[numTsk].resrc.boxx[jj];
av.nut[numTsk].resrc.inflowy1[jj] = av.nut[numTsk].resrc.boxy[jj];
av.nut[numTsk].resrc.outflowx1[jj] = av.nut[numTsk].resrc.boxx[jj];
av.nut[numTsk].resrc.outflowy1[jj] = av.nut[numTsk].resrc.boxy[jj];
av.nut[numTsk].resrc.inflowx2[jj] = av.nut[numTsk].resrc.boxx[jj]+av.nut[numTsk].resrc.boxcol[jj]-1;
av.nut[numTsk].resrc.inflowy2[jj] = av.nut[numTsk].resrc.boxy[jj]+av.nut[numTsk].resrc.boxrow[jj]-1;
av.nut[numTsk].resrc.outflowx2[jj] = av.nut[numTsk].resrc.boxx[jj]+av.nut[numTsk].resrc.boxcol[jj]-1;
av.nut[numTsk].resrc.outflowy2[jj] = av.nut[numTsk].resrc.boxy[jj]+av.nut[numTsk].resrc.boxrow[jj]-1;
av.nut[numTsk].react.resource[jj] = tsk+av.nut[numTsk].uiSub.regionCode[jj]+'q';
av.nut[numTsk].react.name[jj] = tsk+av.nut[numTsk].uiSub.regionCode[jj]+'q';
//console.log('numTsk='+numTsk, 'sub='+jj, 'x2=', av.nut[numTsk].resrc.inflowx2[jj],
// 'y2=', av.nut[numTsk].resrc.inflowy2[jj]);
//av.nut[numTsk].resrc.inflow[jj] = av.nut[numTsk].uiSub.[jj];
console.log('av.nut['+numTsk+'].uiSub.supplyTypeSlct['+jj+']=', av.nut[numTsk].uiSub.supplyTypeSlct[jj]);
switch ( av.nut[numTsk].uiSub.supplyTypeSlct[jj].toLowerCase() ) {
case 'unlimited':
av.nut[numTsk].react.depletable[jj] = 0;
av.nut[numTsk].cell.initial[jj] = 10;
break;
case 'limited':
av.nut[numTsk].cell.resource[jj] = av.nut[numTsk].resrc.name[jj];
av.nut[numTsk].cell.initial[jj] = Math.round(av.nut[numTsk].uiSub.initialHiNp[jj],0);
break;
case 'none':
av.nut[numTsk].cell.resource[jj] = av.nut[numTsk].resrc.name[jj];
av.nut[numTsk].cell.initial[jj] = 0;
break;
case 'chemostat':
av.nut[numTsk].resrc.inflow[jj] = Math.round(av.nut[numTsk].uiSub.inflowHiNp[jj] * av.nut[numTsk].uiSub.area[jj]);
av.nut[numTsk].resrc.outflow[jj] = av.nut[numTsk].uiSub.outflowHiNp[jj];
// av.nut[numTsk].resrc.[jj] = av.nut[numTsk].uiSub.[jj];
//console.log('av.nut['+numTsk+'].resrc.inflow['+jj+']=', av.nut[numTsk].resrc.inflow[jj], '; av.nut['+numTsk+'].resrc.outflow['+jj+']=', av.nut[numTsk].resrc.outflow[jj]);
break;
}
} // for go thru array of subregions in grid;
}; // end global else grid
//console.log('av.nut['+numTsk+'].react.value=', av.nut[numTsk].react.value);
} //end for loop to go thru all sugars
if (true) {
console.log('---------------------------------------------- Value of nutrient structure at this time.');
av.nut_ui_cfg = {};
av.nut_ui_cfg = JSON.parse(JSON.stringify(av.nut));
console.log('av.nut_ui_cfg = ', av.nut_ui_cfg);
console.log('----------------------------------------------End of av.fwt.nutUI2cfgStructure, when called by ', from);
};
};
//---------------------------------------------------------------------------------------- end nutUI2cftParameters --
//--------------------------------------------------------------------------------------------- av.fwt.nut2cfgFile --
av.fwt.nut2cfgFile = function (idStr, toActiveConfigFlag, from) {
var tsk, tskVar, numTsk, resrcFix, cellboxtxt, cellTxt, cellList, ndx, codeTxt, reactTxt;
var logicLen = av.sgr.logicNames.length;
var tmpNum = 0;
var jj=0;
var cbeg = 0;
var cend = av.nut.wrldSize-1;
var wcol = parseInt(av.nut.wrldCols);
var wrow = parseInt(av.nut.wrldRows);
var boxx=0, boxy=0, bcol=parseInt(av.nut.wrldCols), brow=parseInt(av.nut.wrldRows);
console.log('-----------------', from, 'called av.fwt.nut2cfgFile: toActiveConfigFlag=', toActiveConfigFlag, '; cellEnd=', cend, 'logicLen=',logicLen);
var txt = '\n';
txt += '# Environment.cfg file for Avida-ED 4: guidelines for hand editing.\n';
txt += '\n';
txt += '# environment.cfg for information is at https://github.com/devosoft/avida/wiki/Environment-file \n';
txt += '# \n';
txt += '# A "name-set" are the set of statements that all use the same resource name. For Avida-ED the REACTION name should match as well. \n';
txt += '# name and the reaction name should match as well. Each nam set may contatin:\n';
txt += '# RESCOURCE \n';
txt += '# - must be the first line of the name-set for Avida-ED\n';
txt += '# - describes the resouce \n';
txt += '# - defines boundaries for inflow and outflow \n';
txt += '# - sets diffusion on or off \n';
txt += '# - needed for all sub-region resources \n';
txt += '# - grid position is based on two dimensional representation where (0,0) is uppper left corner \n';
txt += '# CELL \n';
txt += '# - requires a RESOURCE statement \n';
txt += '# - defines boundaries for initial so needed for Limited\n';
txt += '# - also used to define gradient resources \n';
txt += '# - may have zero or more CELL statements in each name-set \n';
txt += '# - are not named but must have matcing resource name \n';
txt += '# - grid position are based on a one dimensional array from 0 to world size - 1 \n';
txt += '# - \n';
txt += '# REACTION \n';
txt += '# - needed for there to be any effect on Avians\n';
txt += '# - defines tsk needed and the effect \n';
txt += '# - no matching RESOURCE statement:\n';
txt += '# - - when there is no resouce name is stated or there is no matching RESOURCE statement.\n';
txt += '# - - must be none or unlimited;\n';
txt += '# - - must be glogal \n';
txt += '# - - could act as "none" even for global/local or a subregion even if not technically correct\n';
txt += '# - matching RESOURE statement found \n';
txt += '# - - can be global or local; can be any resource option \n';
txt += '# - can be either global or limited (grid) if a RESOURCE is specieifed. \n';
txt += '#\n';
txt += '# Summary: There must be a REACTION STATEMENT to effect an avidian\n';
txt += '# RESOURCE statement must be first line for each name-set if there is a RESOURCE statement \n';
txt += '# \n';
txt += '\n';
for (var ii=0; ii< logicLen; ii++) { //9
numTsk = av.sgr.logEdNames[ii]; //puts names in order they are on avida-ed user interface
tsk = av.sgr.logicNames[ii]; //3 letter logic names
tskVar = av.sgr.logicVnames[ii]; // variable length logic tasks names as required by Avida
//console.log('numTsk=', numTsk, '; tsk=', tsk, '; tskVar=', tskVar, 'uiAll.geometry=', av.nut[numTsk].uiAll.geometry.toLowerCase());
av.nut.resrcTyp[ii] = av.sgr.typeDefault;
/*
// if ('nor' == tsk) {
if (false) {
txt += 'RESOURCE nor000q:geometry=grid:xdiffuse=0:ydiffuse=0\n';
txt += 'CELL nor000q:0..39:initial=40\n';
txt += 'CELL nor000q:40..79:initial=80\n';
txt += 'CELL nor000q:80..119:initial=120\n';
txt += 'CELL nor000q:120..159:initial=160\n';
txt += 'CELL nor000q:160..199:initial=200\n';
txt += 'CELL nor000q:200..239:initial=240\n';
txt += 'CELL nor000q:240..279:initial=280\n';
txt += 'CELL nor000q:280..319:initial=320\n';
txt += 'CELL nor000q:320..359:initial=360\n';
txt += 'CELL nor000q:360..399:initial=400\n';
txt += 'REACTION nor000q nor process:resource=nor000q:value=4:type=pow requisite:max_count=1\n\n';
}
else if (false) {
txt += 'RESOURCE nor013q:geometry=grid:xdiffuse=0:ydiffuse=0:inflow=128:outflow=0.04:';
txt += 'inflowX1=0:inflowY1=0:inflowX2=19:inflowY2=19:cellbox=0,0,20,20:';
txt += 'outflowX1=0:outflowY1=0:outflowX2=19:outflowY2=19\n';
txt += 'RESOURCE nor013q:geometry=grid:xdiffuse=0:ydiffuse=0:inflow=144:outflow=0.04:';
txt += 'inflowX1=20:inflowY1=0:inflowX2=39:inflowY2=19:cellbox=20,0,20,20:';
txt += 'outflowX1=20av:outflowY1=0:outflowX2=39:outflowY2=19\n';
txt += 'REACTION nor013q xor process:resource=nor013q:value=2.0:type=pow:min=0.9:max=1 requisite:max_count=1\n';
}
else {
*/ if (true) {
if ('global' == av.nut[numTsk].uiAll.geometry.toLowerCase()) {
jj = 0;
tmpNum = 1;
//console.log('numTsk=', numTsk, '; jj=', jj, '; supplyTypeSlct=', av.nut[numTsk].uiAll.supplyTypeSlct.toLowerCase());
txt += '# Task = '+ numTsk + '; Geometry = ' + av.nut[numTsk].uiAll.geometry + '; supplyTypeSlct = '+ av.nut[numTsk].uiAll.supplyTypeSlct.toLowerCase() + '\n';
av.nut.resrcTyp[ii] = av.nut[numTsk].uiAll.supplyTypeSlct.toLowerCase();
switch ( av.nut[numTsk].uiAll.supplyTypeSlct.toLowerCase() ) {
case 'none':
tmpNum = 0;
case 'unlimited':
txt += 'REACTION ' + av.fwt.existCheck( '',av.nut[numTsk].react.name[jj],tskVar );
txt += ' ' + av.fwt.existCheck( '',av.nut[numTsk].react.task[jj], tskVar );
//console.log('av.nut['+numTsk+'].react.value['+jj+']=', av.nut[numTsk].react.value[jj]);
txt += ' process' + av.fwt.existCheck( ':value=', av.nut[numTsk].react.value[jj], tmpNum);
txt += av.fwt.existCheck( ':type=', av.nut[numTsk].react.type[jj], ':type=pow' );
txt += av.fwt.existDfltCheck( ':depletable=', av.nut[numTsk].react.depletable[jj], '', 1 );
txt += ' requisite' + av.fwt.existCheck(':max_count=', av.nut[numTsk].react.max_count[jj], ':max_count=1') + '\n\n';
break;
case 'limited':
txt += 'RESOURCE ' + av.fwt.existCheck('', av.nut[numTsk].resrc.name[jj], av.fwt.existCheck('', av.nut[numTsk].react.resource[jj], tsk) );
txt += av.fwt.existCheck(':geometry=', av.nut[numTsk].resrc.geometry[jj], '');
// Since fileDataRead looks for initial to see if the catagory is limited,
// initial needs to be in the file even if it is the default value = 0
tmpNum = parseFloat(av.nut[numTsk].resrc.initial[jj]) * av.nut.wrldSize;
txt += av.fwt.existCheck(':initial=', tmpNum, '')+ '\n';
// Reaction is the same for limited and chemostat
txt += 'REACTION ' + av.nut[numTsk].react.name[jj] + ' ' + av.nut[numTsk].react.task[jj];
txt += ' process:resource='+av.nut[numTsk].react.resource[jj]+':value=' + av.nut[numTsk].react.value[jj];
txt +=':type=' + av.nut[numTsk].react.type[jj]+':min='+av.nut[numTsk].react.max[jj]+':max='+av.nut[numTsk].react.max[jj];
txt += ' requisite:max_count=' + av.nut[numTsk].react.max_count[jj] + '\n\n';
break;
case 'chemostat':
txt += 'RESOURCE ' + av.fwt.existCheck('', av.nut[numTsk].resrc.name[jj], av.fwt.existCheck('', av.nut[numTsk].react.resource[jj], tsk) );
txt += av.fwt.existCheck(':geometry=', av.nut[numTsk].resrc.geometry[jj], '');
//console.log('inflow=', parseFloat(av.nut[numTsk].resrc.inflow[jj]) );
txt += av.fwt.existCheck(':inflow=', parseFloat(av.nut[numTsk].resrc.inflow[jj]), ':inflow=' + av.nut.wrldSize);
txt += av.fwt.existCheck(':outflow=', av.nut[numTsk].resrc.outflow[jj], ':outflow=0.5') + '\n';
//console.log('numTsk=', numTsk, '; inflow=', tmpNum, '; outflow=', av.nut[numTsk].resrc.outflow[jj]);
// Reaction is the same for limited and chemostate
txt += 'REACTION ' + av.nut[numTsk].react.name[jj] + ' ' + av.nut[numTsk].react.task[jj];
txt += ' process:resource='+av.nut[numTsk].react.resource[jj]+':value=' + av.nut[numTsk].react.value[jj];
txt +=':type=' + av.nut[numTsk].react.type[jj]+':min='+av.nut[numTsk].react.min[jj]+':max='+av.nut[numTsk].react.max[jj];
txt += ' requisite:max_count=' + av.nut[numTsk].react.max_count[jj] + '\n';
/*
// Reaction is the same for limited and chemostate
txt += 'REACTION ' + av.fwt.existCheck( '',av.nut[numTsk].react.name[jj],tskVar );
txt += ' ' + av.fwt.existCheck( '',av.nut[numTsk].react.task[jj], tskVar );
txt += ' process' + av.fwt.existCheck( ':value=', av.nut[numTsk].react.value[jj], '');
txt += av.fwt.existCheck( ':type=', av.nut[numTsk].react.type[jj], ':type=pow' );
txt += av.fwt.existDfltCheck( ':depletable=', av.nut[numTsk].react.depletable[jj], '', 1 );
txt += av.fwt.existCheck(' requisite:max_count=', av.nut[numTsk].react.max_count[jj], ' requisite:max_count1'+av.sgr.reactValues[ii]);
*/
txt += '\n';
break;
}; //end switch
// initialize Resource data table.
} else {
// geometery = grid (local in Avida-ED = grid in avida)
len = av.nut[numTsk].uiSub.regionCode.length;
for (jj=1; jj< len; jj++) {
resrcFix = 'RESOURCE ' + av.fwt.existCheck('', av.nut[numTsk].resrc.name[jj], av.fwt.existCheck('', av.nut[numTsk].react.resource[jj], tsk) );
resrcFix += av.fwt.existCheck(':geometry=', av.nut[numTsk].resrc.geometry[jj], 'grid');
resrcFix += av.fwt.existDfltCheck(':xdiffuse=', av.nut[numTsk].resrc.xdiffuse[jj], 0, 1);
resrcFix += av.fwt.existDfltCheck(':ydiffuse=', av.nut[numTsk].resrc.ydiffuse[jj], 0, 1);
cellboxtxt = '';
boxx = parseInt(av.nut[numTsk].resrc.boxx[jj]);
boxy = parseInt(av.nut[numTsk].resrc.boxy[jj]);
bcol = parseInt(av.nut[numTsk].resrc.boxcol[jj]);
brow = parseInt(av.nut[numTsk].resrc.boxrow[jj]);
console.log('boxx=', boxx, '; boxy=', boxy, '; bcol=', bcol, '; brow=', brow, '; wcol=', wcol, 'wrow=', wrow);
if (av.utl.isNumber(boxx) && av.utl.isNumber(boxy) && av.utl.isNumber(bcol) && av.utl.isNumber(brow) ) {
//if ( (null != av.nut[numTsk].resrc.boxflag[jj]) && (null != av.nut[numTsk].resrc.boxx[jj])
// && (null != av.nut[numTsk].resrc.boxy[jj]) && (null != av.nut[numTsk].resrc.boxcol[jj])
// && (null != av.nut[numTsk].resrc.boxrow[jj]) ) {
if (av.nut[numTsk].resrc.boxflag[jj]) {
cellboxtxt += ':cellbox=' + boxx + ',' + boxy + ',' + bcol + ',' + brow;
}
};
//console.log('cellboxtxt=', cellboxtxt);
if (0 != parseInt(av.nut[numTsk].uiSub.regionCode)) {
resrcFix = resrcFix + cellboxtxt;
}
//console.log('av.nut['+numTsk+'].resrc.name['+jj+']=', av.nut[numTsk].resrc.name[jj], '; av.nut['+numTsk+'].react.resource['+jj+']=', av.nut[numTsk].react.resource[jj], 'tsk=', tsk);
cellTxt = 'CELL ' + av.fwt.existCheck('', av.nut[numTsk].resrc.name[jj], av.fwt.existCheck('', av.nut[numTsk].react.resource[jj], tsk) );
//Find cell description
codeTxt = av.nut[numTsk].uiSub.regionCode[jj];
ndx = av.sgr.regionQuarterCodes.indexOf(codeTxt);
cellList = ':';
//lineararray index = x + y * (numcols)
if ('000' == codeTxt || '012' == codeTxt || '034' == codeTxt) {
//subdish includes entire rows so it is easier to define.
cbeg = Number(av.nut[numTsk].resrc.inflowx1[jj]) +
Number(av.nut[numTsk].resrc.inflowy1[jj]) * wcol;
cend = Number(av.nut[numTsk].resrc.inflowx2[jj]) +
Number(av.nut[numTsk].resrc.inflowy2[jj]) * wcol;
cellList = ':' + Math.floor(cbeg) + '..' + Math.floor(cend);
//console.log('inx1=', Number(av.nut[numTsk].resrc.inflowx1[jj]), 'iny1=', Number(av.nut[numTsk].resrc.inflowy1[jj])
// , 'inx2=', Number(av.nut[numTsk].resrc.inflowx2[jj]), 'iny2=', Number(av.nut[numTsk].resrc.inflowy2[jj])
// , 'wld=', Number(av.nut.wrldCols), '; cellBeg=', cellBeg, '; cellEnd=', cellEnd);
//console.log('cellList=', cellList);
}
else {
//Need to find cell list in parts for half rows
//This is wrong as I think it only gives the first row of list in that region
var cii = 0;
var cbeg, cend;
for ( cii = 0; cii < brow; cii++) {
if (0 < cii) { cellList += ',';}
cbeg = boxx + boxy * wcol + cii * wcol;
cend = cbeg + bcol - 1;
cellList += Math.floor(cbeg) + '..' + Math.floor(cend); //each row;
};
/*
for ( bx = boxx; bx < boxy+brow; bx++) {
cellBeg = boxx + boxy * Number(av.nut.wrldCols);
cellEnd = cellBeg + bcol-1;
//console.log('boxx=', bbox, '; boxy=', boxy, '; wldCols=', Number(av.nut.wrldCols) );
cellList += Math.floor(cellBeg) + '..' + Math.floor(cellEnd); //this is just the first row
}
*/
};
//console.log('cellList=', cellList);
cellTxt += cellList;
tmpNum = Number(av.nut[numTsk].cell.initial[jj]);
if (av.utl.isNumber( tmpNum) ) {
cellTxt += av.fwt.existCheck( ':initial=', Math.round(tmpNum).toString(), tmpNum )+ '\n';
}
else {
tmpNum = Number(av.nut[numTsk].resrc.initial[jj]);
if (av.utl.isNumber( tmpNum) ) {
cellTxt += av.fwt.existCheck( ':initial=', Math.round(tmpNum).toString(), tmpNum )+ '\n';
//console.log('tmpnum is a number: cellTxt=', cellTxt);
}
else if ('none' == av.nut[numTsk].uiSub.supplyTypeSlct[jj].toLowerCase()) {
cellTxt += ':initial=0\n';
//console.log('none: cellTxt=', cellTxt);
}
else if ('unlimited' == av.nut[numTsk].uiSub.supplyTypeSlct[jj].toLowerCase()) {
cellTxt += av.fwt.existCheck( ':initial=', Math.round(), 10 )+ '\n';
//console.log('should never reach this location: cellTxt=', cellTxt);
}
else {
cellTxt += ':initial=14400\n';
//console.log('else cellTxt=', cellTxt);
}
};
reactTxt = 'REACTION ' + av.fwt.existCheck( '',av.nut[numTsk].react.name[jj],tskVar );
reactTxt += ' ' + av.fwt.existCheck( '',av.nut[numTsk].react.task[jj], tskVar );
reactTxt += ' process' + av.fwt.existCheck( ':resource=', av.nut[numTsk].react.resource[jj], '');
reactTxt += av.fwt.existCheck( ':value=', av.nut[numTsk].react.value[jj], '');
reactTxt += av.fwt.existCheck( ':type=', av.nut[numTsk].react.type[jj], ':type=pow' );
reactTxt += av.fwt.existDfltCheck( ':depletable=', av.nut[numTsk].react.depletable[jj], '', 1 );
//console.log('av.nut['+numTsk+'].react.depletable['+jj+']=', av.nut[numTsk].react.depletable[jj]);
reactTxt += av.fwt.existCheck(' requisite:max_count=', av.nut[numTsk].react.max_count[jj], ' requisite:max_count1'+av.sgr.reactValues[ii]);
reactTxt += '\n\n';
//console.log('numTsk=', numTsk, '; jj=', jj, '; supplyTypeSlct=',av.nut[numTsk].uiSub.supplyTypeSlct[jj].toLowerCase());
txt += '# Task = '+ numTsk + '; Geometry = ' + av.nut[numTsk].uiAll.geometry + '; supplyTypeSlct = '+ av.nut[numTsk].uiSub.supplyTypeSlct[jj].toLowerCase() + '\n';
switch ( av.nut[numTsk].uiSub.supplyTypeSlct[jj].toLowerCase() ) {
case 'unlimited':
txt += resrcFix + '\n';
txt += cellTxt;
txt += reactTxt;
//console.log('resrcFix=', resrcFix);
break;
case 'none':
av.nut.resrcTyp[ii] = 'none';
case 'limited':
av.nut.resrcTyp[ii] = 'limited';
txt += resrcFix + '\n';
txt += cellTxt;
txt += reactTxt;
//console.log('resrcFix=', resrcFix);
break;
case 'chemostat':
av.nut.resrcTyp[ii] = 'chemosat';
txt += 'RESOURCE ' + av.fwt.existCheck('', av.nut[numTsk].resrc.name[jj], av.fwt.existCheck('', av.nut[numTsk].react.resource[jj], tsk) );
txt += av.fwt.existCheck(':geometry=', av.nut[numTsk].resrc.geometry[jj], '');
// Since fileDataRead looks for inflow/outflow to see if the catagory is chemostat,
// initial must not exist in file
txt += av.fwt.existCheck(':inflow=', av.nut[numTsk].resrc.inflow[jj], ':inflow='+av.nut.wrldSize);
txt += av.fwt.existCheck(':outflow=', av.nut[numTsk].resrc.outflow[jj], ':outflow=0.5');
txt += av.fwt.existCheck(':inflowx1=', av.nut[numTsk].resrc.inflowx1[jj], ':inflowx1=0' );
txt += av.fwt.existCheck(':inflowy1=', av.nut[numTsk].resrc.inflowy1[jj], ':inflowy1=0' );
txt += av.fwt.existCheck(':inflowx2=', av.nut[numTsk].resrc.inflowx2[jj], ':inflowx2='+(av.nut.wrldCols-1));
txt += av.fwt.existCheck(':inflowy2=', av.nut[numTsk].resrc.inflowy2[jj], ':inflowy2='+(av.nut.wrldRows-1) );
txt += av.fwt.existCheck(':outflowx1=', av.nut[numTsk].resrc.outflowx1[jj], ':outflowx1=0' );
txt += av.fwt.existCheck(':outflowy1=', av.nut[numTsk].resrc.outflowy1[jj], ':outflowy1=0' );
txt += av.fwt.existCheck(':outflowx2=', av.nut[numTsk].resrc.outflowx2[jj], ':outflowx2='+(av.nut.wrldCols-1));
txt += av.fwt.existCheck(':outflowy2=', av.nut[numTsk].resrc.outflowy2[jj], ':outflowy2='+(av.nut.wrldRows-1) );
txt += av.fwt.existDfltCheck(':xdiffuse=', av.nut[numTsk].resrc.xdiffuse[jj], 0, 1);
txt += av.fwt.existDfltCheck(':ydiffuse=', av.nut[numTsk].resrc.ydiffuse[jj], 0, 1);
txt += '\n';
txt += reactTxt;
// Reaction is the same for limited and chemostate
break;
}; // end of switch
}; // end loop through array of each resource/reaction instance
}; // end of else geometry=grid
}; // end of else based on if to run some test code
txt += '#-----\n';
}; // end of looping through each sugar
console.log('-------------------------------------- End of av.fwt.nut2cfgFile -------------------------------');
if (toActiveConfigFlag) av.fwt.makeActConfigFile('environment.cfg', txt, 'av.fwt.nut2cfgFile');
else {av.fwt.makeFzrFile(idStr+'/environment.cfg', txt, 'av.fwt.nut2cfgFile');}
};
//----------------------------------------------------------------------------------------- end av.fwt.nut2cfgFile --
/*----------------------------------------------------------------------------------- av.fwt.makeFzrEnvironmentTest --*/
av.fwt.makeFzrEnvironmentTest = function (idStr, from) {
'use strict';
if (av.debug.fio) console.log(from, 'called av.fwt.makeFzrEnvironmentTest');
var txt = av.dom.environConfigEdit.value;
if (true) {av.fwt.makeActConfigFile('environment.cfg', txt, 'av.fwt.makeFzrEnvironmentTest');}
else { av.fwt.makeFzrFile(idStr+'/environment.cfg', txt, 'av.fwt.makeFzrEnvironmentTest');}
};
/*-------------------------------------------------------------------------------------- av.fwt.makeFzrAncestorAuto --*/
av.fwt.makeFzrAncestorAuto = function (idStr, toActiveConfigFlag, from) {
'use strict';
if (av.debug.fio) console.log(from, ' called av.fwt.makeFzrAncestorAuto: idStr=', idStr, '; toActiveConfigFlag=', toActiveConfigFlag);
var txt = '';
var lngth = av.parents.autoNdx.length;
for (var ii = 0; ii < lngth; ii++) {
txt += av.parents.name[av.parents.autoNdx[ii]] + '\n';
txt += av.parents.genome[av.parents.autoNdx[ii]] + '\n';
}
if (toActiveConfigFlag) {av.fwt.makeActConfigFile('ancestors.txt', txt, 'av.fwt.makeFzrAncestorAuto');}
else {av.fwt.makeFzrFile(idStr+'/ancestors.txt', txt), 'av.fwt.makeFzrAncestorAuto';}
};
/*-------------------------------------------------------------------------------------- av.fwt.makeFzrAncestorHand --*/
av.fwt.makeFzrAncestorHand = function (idStr, toActiveConfigFlag, from) {
'use strict';
//if (av.debug.fio) console.log(from, ' called av.fwt.makeFzrAncestorHand: idStr=', idStr, '; toActiveConfigFlag=', toActiveConfigFlag);
var txt = '';
var lngth = av.parents.handNdx.length;
for (var ii = 0; ii < lngth; ii++) {
txt += av.parents.name[av.parents.handNdx[ii]] + '\n';
txt += av.parents.genome[av.parents.handNdx[ii]] + '\n';
txt += av.parents.col[av.parents.handNdx[ii]] + ',' + av.parents.row[av.parents.handNdx[ii]] + '\n';
}
if (toActiveConfigFlag) {av.fwt.makeActConfigFile('ancestors_manual.txt', txt, 'av.fwt.makeFzrAncestorHand');}
else {av.fwt.makeFzrFile(idStr+'/ancestors_manual.txt', txt, 'av.fwt.makeFzrAncestorHand');}
};