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Update README.md
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RaverJay authored Nov 13, 2023
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Expand Up @@ -20,7 +20,6 @@ Optional parameters:
* supply a genome reference with `--genome_reference` to get average nucleotide identity values for the assemblies
* specify the output folder with `--output` (default `results_CholerAegon`)
* add `--update_card` (or use stand-alone) to download the newest [CARD](https://card.mcmaster.ca/home) resistance database data
* add `--output <folder>` to specify the output folder (default `results_choleraegon`)

## Examples

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