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Updates testing and linting #18

Updates testing and linting

Updates testing and linting #18

Workflow file for this run

name: Docs
on:
push:
branches:
- "main"
pull_request:
branches:
- "main"
jobs:
build_and_deploy_docs:
name: Documentation Building and Deployment
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
with:
path: cvpack
token: ${{ secrets.GITHUB_TOKEN }}
- name: Additional info about the build
shell: bash
run: |
uname -a
df -h
ulimit -a
- uses: mamba-org/setup-micromamba@v1
with:
micromamba-version: '1.4.3-0'
environment-file: cvpack/devtools/conda-envs/docs_env.yaml
environment-name: docs
create-args: >-
python=3.9
- name: Install package
shell: bash -l {0}
run: |
cd cvpack/
python -m pip install . --no-deps
micromamba list
- name: Build Documentation
shell: bash -l {0}
run: |
cd cvpack/
sphinx-build ./docs ./html
- name: Run tests
shell: bash -l {0}
run: |
cd cvpack/
pytest
- name: Get coverage report
id: coverage
shell: bash -l {0}
run: |
cd cvpack/
COVERAGE=$(coverage report | tail -1 | awk '{print $4}')
OFFSET=$(((${COVERAGE::-1}-35)/6-1))
[[ $OFFSET < 0 ]] && OFFSET=0
PALETTE="000111222333"
CODE=${PALETTE:$OFFSET:3}
COLOR=$(echo $CODE | sed -e "s/0/red,/g; s/1/orange,/g; s/2/yellow,/g; s/3/green,/g; s/,$//")
echo "coverage=${COVERAGE}" | tee -a "${GITHUB_OUTPUT}"
echo "color=${COLOR}" | tee -a "${GITHUB_OUTPUT}"
- name: Generate coverage badge
uses: emibcn/badge-action@v2.0.2
with:
label: 'Coverage'
label-color: 'black'
status: ${{ steps.coverage.outputs.coverage }}
color: ${{ steps.coverage.outputs.color }}
path: 'cvpack/htmlcov/coverage.svg'
- name: Deploy documentation
shell: bash -l {0}
run: |
if [ "$GITHUB_EVENT_NAME" == "pull_request" ]; then
echo "Deployment is deactivated on pull requests"
else
cd cvpack/
git reset --hard HEAD
set -x
echo "::group::Push page to gh-pages branch"
git config user.name "$(git show --format=%an -s)"
git config user.email "$(git show --format=%ae -s)"
git fetch origin
git switch gh-pages
rsync -va --delete-excluded html/ docs/
rsync -va --delete-excluded htmlcov/ docs/coverage/
touch docs/.nojekyll
git add -f docs/*
git add -f docs/.nojekyll
git add -f docs/coverage/*
git commit -m "Docs from $GITHUB_REF $GITHUB_SHA" || echo "Branch is up to date"
git push -f origin gh-pages
echo "::endgroup::"
fi