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Updated README.md
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craabreu committed Apr 20, 2024
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Expand Up @@ -51,7 +51,8 @@ The CVs implemented in CVPack are listed in the table below.
| [Meta CV] | a function of other collective variables |
| [Number of contacts] | number of contacts between two groups of atoms |
| [OpenMM Force wrapper] | converts an OpenMM Force object into a CVPack CV |
| [Path in CV space] | progress along (or deviation from) a predefined path in CV space |
| [Path in CV space] | progress along (or deviation from) a path in CV space |
| [Path in RMSD space] | progress along (or deviation from) a path in RMSD space |
| [Radius of gyration] | radius of gyration of a group of atoms |
| [(Radius of gyration)^2]| square of the radius of gyration of a group of atoms |
| [Residue coordination] | number of contacts between two disjoint groups of residues |
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[Number of contacts]: https://redesignscience.github.io/cvpack/latest/api/NumberOfContacts.html
[OpenMM Force wrapper]: https://redesignscience.github.io/cvpack/latest/api/OpenMMForceWrapper.html
[Path in CV space]: https://redesignscience.github.io/cvpack/latest/api/PathInCVSpace.html
[Path in RMSD space]: https://redesignscience.github.io/cvpack/latest/api/PathInRMSDSpace.html
[Radius of gyration]: https://redesignscience.github.io/cvpack/latest/api/RadiusOfGyration.html
[(Radius of gyration)^2]: https://redesignscience.github.io/cvpack/latest/api/RadiusOfGyrationSq.html
[Residue coordination]: https://redesignscience.github.io/cvpack/latest/api/ResidueCoordination.html
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