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Merge pull request #71 from jcf2/patch-1
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Update README.md - typos etc.
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yarikoptic authored Nov 14, 2024
2 parents 2f43d27 + 98626d0 commit 3fc2c85
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6 changes: 3 additions & 3 deletions README.md
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Expand Up @@ -168,7 +168,7 @@ Now fetch the image for the most recent version of reproin from under images/rep

The singularity image we fetched already comes with reproin installed inside,
but to "drive" conversion we need to have `reproin` available in the base
environment. Because we do not have it (yet) packages for conda
environment. Because we do not have it (yet) packaged for conda
distribution, we will just clone this repository and gain access to the script:

git clone https://github.com/ReproNim/reproin
Expand All @@ -190,13 +190,13 @@ we can do e.g.
export BIDS_DIR=$HOME/BIDS-demo

and then let's create the top-level datalad dataset to contain all converted
data
data, configuring to store text files in git rather than git-annex,

datalad create -c text2git "$BIDS_DIR"

### Collect DICOMs listing

ATM reproin container has older version of the script, so to use newer version we would just bind mount our cloned script inside
ATM reproin container has an older version of the script, so to use newer version we would just bind mount our cloned script inside,

singularity run -e -c \
--env BIDS_DIR=$BIDS_DIR \
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