Merge pull request #175 from Rfam/genome-pipeline

Genome pipeline
Rfam · Aug 30, 2024 · 14afc1d · 14afc1d
2 parents 6279d92 + 8098752
commit 14afc1d
Show file tree

Hide file tree

Showing 117 changed files with 22,196 additions and 1,333 deletions.
diff --git a/.gitignore b/.gitignore
@@ -150,3 +150,5 @@ work/
 
 #py2to3 backup files
 *.py.bak
+
+nextflow
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -0,0 +1,19 @@
+# See https://pre-commit.com for more information
+# See https://pre-commit.com/hooks.html for more hooks
+repos:
+-   repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v3.2.0
+    hooks:
+    -   id: trailing-whitespace
+    -   id: end-of-file-fixer
+    -   id: check-yaml
+-   repo: https://github.com/psf/black
+    rev: 22.6.0
+    hooks:
+    -   id: black
+-   repo: https://github.com/pycqa/isort
+    rev: 5.12.0
+    hooks:
+    -   id: isort
+        args: ["--profile", "black", "--filter-files"]
+        name: isort (python)
Original file line number	Diff line number	Diff line change
Expand Up		@@ -150,3 +150,5 @@ work/

		#py2to3 backup files
		*.py.bak

		nextflow