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Near-Duplicate-Classes-and-Functions.md

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Some of the classes/functions in Rosetta are near duplicate because of historical reasons or subtle differences in problems they are designed to solve. This page explains the reason why these near duplicate classes exist and what are the suitable problems that these classes/functions are built for.

Suspects to investigate

  • Buried unsat filters (Scott Boyken is best leader here)
  • interface detection machineries

Movers

Loop modeling

Mover name Reason to exist Suitable problems to solve
[[LoopmodelWrapper scripting_documentation/RosettaScripts/xsd/mover_LoopmodelWrapper_type
]] Wrapper for the legacy loop modeling code for the [[Loop modeling application loopmodel]] such that it can be used through the RosettaScripts interface
[[LoopModeler LoopModelerMover]] A refactored version of the legacy loop modeling code. Should be used through the RosettaScripts interface.
[[Generalized Kinematic Closure (GeneralizedKIC) GeneralizedKICMover]] A generalized protocol for modeling loops on any polymers

Filters