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test_sbml_structured_SBML.xml
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<?xml version="1.0" encoding="UTF-8"?>
<!-- Created by BioNetGen 2.2.6 -->
<sbml xmlns="http://www.sbml.org/sbml/level2/version3" level="2" version="3">
<model id="plain2">
<listOfCompartments>
<compartment id="cell" size="1"/>
</listOfCompartments>
<listOfSpecies>
<species id="S1" compartment="cell" initialAmount="1" name="MolA"/>
<species id="S2" compartment="cell" initialAmount="1" name="MolB"/>
<species id="S3" compartment="cell" initialAmount="0" name="MolA_MolB"/>
<species id="S4" compartment="cell" initialAmount="0" name="MolA-P"/>
<species id="S5" compartment="cell" initialAmount="0" name="(MolB)2"/>
</listOfSpecies>
<listOfParameters>
<!-- Independent variables -->
<parameter id="k1_f" value="1"/>
<parameter id="k1_r" value="0.1"/>
<parameter id="k2_f" value="1"/>
<parameter id="k2_r" value="0.1"/>
<parameter id="k3_f" value="1"/>
<!-- Observables -->
<parameter id="A____" constant="false"/>
<parameter id="B____" constant="false"/>
</listOfParameters>
<listOfRules>
<!-- Observables -->
<assignmentRule variable="A____">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<plus/>
<ci> S1 </ci>
<ci> S3 </ci>
<ci> S4 </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="B____">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<plus/>
<ci> S2 </ci>
<ci> S3 </ci>
</apply>
</math>
</assignmentRule>
</listOfRules>
<listOfReactions>
<reaction id="R1" reversible="false">
<listOfReactants>
<speciesReference species="S1"/>
<speciesReference species="S2"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="S3"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> k1_f </ci>
<ci> S1 </ci>
<ci> S2 </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="R2" reversible="false">
<listOfReactants>
<speciesReference species="S3"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="S4"/>
<speciesReference species="S2"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> k2_f </ci>
<ci> S3 </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="R3" reversible="false">
<listOfReactants>
<speciesReference species="S3"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="S1"/>
<speciesReference species="S2"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> k1_r </ci>
<ci> S3 </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="R4" reversible="false">
<listOfReactants>
<speciesReference species="S4"/>
<speciesReference species="S2"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="S3"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> k2_r </ci>
<ci> S4 </ci>
<ci> S2 </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="R5" reversible="false">
<listOfReactants>
<speciesReference species="S2"/>
<speciesReference species="S2"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="S5"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> k3_f </ci>
<ci> S2 </ci>
<ci> S2 </ci>
</apply>
</math>
</kineticLaw>
</reaction>
</listOfReactions>
</model>
</sbml>