2‐Requirement

hmmer3

For windows, you can install hmmer fellow this tutorial.

Possible bug: Can't find cygwin1.dll. Solution.

For other system, you can install hmmer fellow the documentation in HMMER.

Type hmmscan -h in cmd command to check install.

Clustal Omega

Fellowing this install tutorial.

Type clustalo -h in cmd command to check install.

Pfam

Pfam-A models can be downloaded in InterPro.

cd your/Pfam/database/path 
wget ftp://ftp.ebi.ac.uk/pub/databases/Pfam/releases/Pfam37.0/Pfam-A.hmm.gz
gunzip Pfam-A.hmm.gz
hmmpress Pfam-A.hmm

Pfam database folder should include these files: Pfam-A.hmm, Pfam-A.hmm.h3f, Pfam-A.hmm.h3i, Pfam-A.hmm.h3m,Pfam-A.hmm.h3p.

motif information

Matlab‐version

You can find in NRPS-motif-Finder-matlab-version/reference_motif.