2‐Requirement

hmmer3

For windows, you can install hmmer fellow this tutorial.

For other system, you can install hmmer fellow the documentation in HMMER.

Clustal Omega

Fellowing this install tutorial.

Pfam

Pfam-A models can be downloaded in InterPro.

cd your/Pfam/database/path 
wget ftp://ftp.ebi.ac.uk/pub/databases/Pfam/releases/Pfam31.0/Pfam-A.hmm.gz
gunzip Pfam-A.hmm.gz
hmmpress Pfam-A.hmm

Pfam database folder should include these files: Pfam-A.hmm, Pfam-A.hmm.h3f, Pfam-A.hmm.h3i, Pfam-A.hmm.h3m,Pfam-A.hmm.h3p.

motif information

Matlab‐version

You can find in NRPS-motif-Finder-matlab-version/reference_motif.