Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Is motor fMRI data essential to the NIAK pipeline? #397

Open
Ya-Lin-Huang opened this issue Nov 20, 2020 · 1 comment
Open

Is motor fMRI data essential to the NIAK pipeline? #397

Ya-Lin-Huang opened this issue Nov 20, 2020 · 1 comment

Comments

@Ya-Lin-Huang
Copy link

Hi!
I am trying to use NIAK pipeline to pre-process the resting fMRI data from ABIDE II, while the motor fMRI data is not available in this open dataset. The ABIDE II only provide raw images of T1w and resting fMRI.
So I only give the pipeline fMRI data path and T1w data path :
image

and it seems like the pipeline is running...
image
but the processing time of slice timing is abnormally long. The process is not finished after a running time of 30 minutes.

I wanna ask:

  1. Does the motor fMRI data is essential to the NIAK pipeline?
  2. If the time of processing is normal? If not, what could the problem be and what could I do to fix it?

Thanks for your time and help!
Hope you have a nice day^^

Lily

@Ya-Lin-Huang
Copy link
Author

[update]
hi,
After several tryings, the pipeline passed through that part successfully!!
but the process of my slice timing is failed, and the final fMRI preprocessed file is not generated.
I tried setting the skip flag of slice timing as 1 to bypass this procedure, but the error still exists.
Thank you for your help!
image

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant