camelCase Bioconductor Convention is Not Used

[DarioS]

I see this has been submitted to Bioconductor for evaluation. One of the conventions which is different to what Bioconductor expects is function and variable naming. See Functions Names and Variable Names sections of the developer's guide. See also Spaltter simulator, which is accepted into Bioconductor and conforms to the guide. Using a consistent convention for all packages in Bioconductor ecosystem makes it a bit easier for users to memorise parameters and switch between packages.

[SONGDONGYUAN1994]

Hi Dario,
Thank you for your important suggestion! We will fix it ASAP. I would appreciate it if you have any good ideas for converting all snake_case to camelCase automatically.

Best regards,
Dongyuan

[DarioS]

One way to do it quick is to use Find in Files... from Edit menu of RStudio. Then, (1) click on Replace button, type in the new variable into the text box name and, if the results preview looks good, click on 2 Replace All button.

Unfortunately, RStudio doesn't have proper refactoring functionality like other I.D.E. such as Eclipse.