updates CUBIT scripts (to work with newer cubit versions & avoid fixed NDT mesh tolerances); updates code formatting (to let the code breathe again) and workflow tests (for newer macOS clients)

[danielpeter]

No description provided.

[codecov]

Codecov Report

Attention: Patch coverage is 24.31880% with 1111 lines in your changes are missing coverage. Please review.

Project coverage is 51.51%. Comparing base (ce914f7) to head (a3267f2).

Files	Patch %	Lines
src/meshfem3D/earth_chunk.f90	0.00%	195 Missing ⚠️
...or_model/regularization/regularization_SEM_mod.f90	0.00%	182 Missing ⚠️
src/specfem3D/make_gravity.f90	0.00%	106 Missing ⚠️
src/generate_databases/model_1d_prem.f90	22.01%	85 Missing ⚠️
src/meshfem3D/chunk_earth_mesh_mod.f90	0.00%	62 Missing ⚠️
src/generate_databases/get_perm_color.f90	0.00%	44 Missing ⚠️
...rojection_on_FD_grid/projection_on_FD_grid_mod.f90	0.00%	41 Missing ⚠️
..._model/input_output/passive_imaging_format_mod.f90	0.00%	35 Missing ⚠️
...se_problem_for_model/input_output/IO_model_mod.f90	2.85%	34 Missing ⚠️
...oblem_for_model/input_output/interpolation_mod.f90	0.00%	33 Missing ⚠️
... and 46 more

Additional details and impacted files

@@             Coverage Diff             @@
##            devel    #1696       +/-   ##
===========================================
+ Coverage   25.64%   51.51%   +25.86%     
===========================================
  Files         233      267       +34     
  Lines       50224    60768    +10544     
===========================================
+ Hits        12880    31302    +18422     
+ Misses      37344    29466     -7878     

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