Processing scripts for DEMISTIFI

Current contents:

pipeline_slurm.sh : Runs the preprocessing and segmentation and then Quantiphyse for resampling and statistics
resample_and_stats.qp : Quantiphyse batch script to resample masks and extract statistics

Name		Name	Last commit message	Last commit date
Latest commit History 41 Commits
.gitignore		.gitignore
README.md		README.md
body_seg_data_report.py		body_seg_data_report.py
clean_cortex_medulla_masks.py		clean_cortex_medulla_masks.py
demistifi_pipeline.py		demistifi_pipeline.py
demistifi_pipeline_hc.sh		demistifi_pipeline_hc.sh
demistifi_pipeline_kidney_disease.sh		demistifi_pipeline_kidney_disease.sh
demistifi_pipeline_liver_disease.sh		demistifi_pipeline_liver_disease.sh
demistifi_pipeline_pancreas_disease.sh		demistifi_pipeline_pancreas_disease.sh
demistifi_pipeline_spleen_disease.sh		demistifi_pipeline_spleen_disease.sh
generate_subject_idps.py		generate_subject_idps.py
img_summarise.py		img_summarise.py
resample_and_stats.qp		resample_and_stats.qp

Provide feedback