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13 Open 37 Closed
13 Open 37 Closed
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Issues list

Is this pipeline actively maintained?
#53 opened Jan 19, 2024 by tatyana-perlova
1
Use pre-commit package for enforcement
#50 opened Jul 5, 2022 by MaximLippeveld
Specify different memory requirements for GPU workers in mpi mode enhancement New feature or request
#48 opened Mar 3, 2022 by MaximLippeveld
Implement possibility to refine masks after CellPose segmentation segmentation Relating to segmentation
#47 opened Feb 3, 2022 by MaximLippeveld
1
Switch to tifffile in multiframe tiff loader data-loading Relating to data loading
#44 opened Nov 1, 2021 by MaximLippeveld BII 2021
Add fluorescence intensity quality control plots to spot batch effects preprocessing Steps between raw data loading and segmentation.
#35 opened Aug 26, 2021 by MaximLippeveld
Compute CP MeasureImageQuality features to filter out abberant images prior to full computation preprocessing Steps between raw data loading and segmentation.
#34 opened Aug 25, 2021 by MaximLippeveld
Compute quantiles with random undersampling preprocessing Steps between raw data loading and segmentation.
#27 opened Aug 24, 2021 by MaximLippeveld BII 2021
Add per-image min-max normalization preprocessing Steps between raw data loading and segmentation.
#26 opened Aug 24, 2021 by MaximLippeveld BII 2021
Implement principal feature analysis enhancement New feature or request image-features Relating to image features
#13 opened Jul 15, 2021 by MaximLippeveld
Implement feature extraction that combines channels enhancement New feature or request image-features Relating to image features
#12 opened Jul 15, 2021 by MaximLippeveld BII 2021
Feature extraction from pretrained neural nets enhancement New feature or request image-features Relating to image features
#8 opened Jul 15, 2021 by MaximLippeveld
Add demo dataset for new users enhancement New feature or request
#1 opened Jul 14, 2021 by MaximLippeveld
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