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description
Alternative Name: (Resource Relations Enhancer)

Relation Enhancer

Full Path:

Foundry-ES/consumers/src/main/java/org/neuinfo/foundry/consumers/jms/consumers/plugins/scicrunch/ResourceRelationsEnhancer.java

Synopsis:

By querying theresource_relationships table with the current record's SCR ID, the Enhancer retrieves the immediate parents and children, ancestors and descendants of the current resource.

The Enhancer recursively traverses upwards and downwards the relational tree of organizations and inserts the name and curie of these resources into the current record.

Enhancement Example

"organization" : 
{"hierarchy": {
  "parent": [{
    "name": "Digestive Disease Centers",
    "curie": "SCR_015212"
  }],
  "ancestors": [{
    "name": "Digestive Disease Centers",
    "curie": "SCR_015212"
  }],
  "children": [
    {
      "name": "CURE - Digestive Diseases Research Center Human Studies Core",
      "curie": "SCR_015207"
    },
    {
      "name": "CURE - Digestive Diseases Research Center Morphology and Imaging Core",
      "curie": "SCR_015209"
    },
    {
      "name": "CURE - Digestive Diseases Research Center Molecular Biology and Peptidomics Core",
      "curie": "SCR_015213"
    },
    {
      "name": "CURE - Digestive Diseases Research Center Animal Models Core",
      "curie": "SCR_015217"
    },
    {
      "name": "CURE - Digestive Diseases Research Center Administrative Core",
      "curie": "SCR_015231"
    }
  ],
  "descendants": [
    {
      "name": "CURE - Digestive Diseases Research Center Human Studies Core",
      "curie": "SCR_015207"
    },
    {
      "name": "CURE - Digestive Diseases Research Center Morphology and Imaging Core",
      "curie": "SCR_015209"
    },
    {
      "name": "CURE - Digestive Diseases Research Center Molecular Biology and Peptidomics Core",
      "curie": "SCR_015213"
    },
    {
      "name": "CURE - Digestive Diseases Research Center Animal Models Core",
      "curie": "SCR_015217"
    },
    {
      "name": "CURE - Digestive Diseases Research Center Administrative Core",
      "curie": "SCR_015231"
    }
  ]
}}

Tables Used for Enhancement:

Table Name Description
scicrunch_registry_view View containing the resources within SciCrunch
resource_relationships Contains the relationship between two sources

Enhancer Parameters

Note: This enhancer expects the following parameters to be defined when initialized:

  • dbURL: The JDBC URL to the nif_eelg database
  • dbUser: User of the nif_eelg database
  • dbPassword: Password to the nif_eelg database

Relation Enhancer Tester

Full Path:

Foundry-ES/consumers/src/test/java/org/neuinfo/foundry/consumers/ResourceRelationsEnhancerTests.java