Skip to content

Issues: SegataLab/panphlan

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

10 Open 28 Closed
10 Open 28 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

I must merge the Pair-ends metagenomic data together, and then starting running the panphlan mapping.
#41 opened Jan 23, 2024 by allen-zhan340
Problem with download reference genome from PanPhlAn pangenome database
#40 opened Nov 8, 2023 by shiangchiet
panphlan_clean_pangenome.py isn't installed as part of the package
#39 opened Apr 10, 2023 by sterrettJD
How to import roary pangenome results into panphlan?
#38 opened Jan 6, 2023 by yihandqx
Index for manual {species}_pangenome.tsv
#37 opened Aug 10, 2022 by Hocnonsense
Error running the sample a second time
#35 opened Dec 7, 2021 by namdeka
1
--func_annot
#27 opened Feb 11, 2021 by nick-youngblut
6
speed up panphlan_map.py with intervaltree?
#26 opened Dec 20, 2020 by nick-youngblut
Error running panphlan_map
#20 opened Dec 17, 2020 by sanpande
6
NameError: name 'randint' is not defined during panphlan_profiling.py
#5 opened May 28, 2020 by fconstancias
7
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.