diff --git a/lib/ruby_indexer/lib/ruby_indexer/declaration_listener.rb b/lib/ruby_indexer/lib/ruby_indexer/declaration_listener.rb
index ab7cbed46..fa503cdde 100644
--- a/lib/ruby_indexer/lib/ruby_indexer/declaration_listener.rb
+++ b/lib/ruby_indexer/lib/ruby_indexer/declaration_listener.rb
@@ -68,8 +68,10 @@ def on_class_node_enter(node)
         superclass.slice
       end
 
+      nesting = name.start_with?("::") ? [name.delete_prefix("::")] : @stack + [name.delete_prefix("::")]
+
       entry = Entry::Class.new(
-        fully_qualify_name(name),
+        nesting,
         @file_path,
         node.location,
         comments,
@@ -94,7 +96,9 @@ def on_module_node_enter(node)
       name = node.constant_path.location.slice
 
       comments = collect_comments(node)
-      entry = Entry::Module.new(fully_qualify_name(name), @file_path, node.location, comments)
+
+      nesting = name.start_with?("::") ? [name.delete_prefix("::")] : @stack + [name.delete_prefix("::")]
+      entry = Entry::Module.new(nesting, @file_path, node.location, comments)
 
       @owner_stack << entry
       @index << entry
@@ -205,10 +209,8 @@ def on_call_node_enter(node)
         handle_attribute(node, reader: false, writer: true)
       when :attr_accessor
         handle_attribute(node, reader: true, writer: true)
-      when :include
-        handle_module_operation(node, :included_modules)
-      when :prepend
-        handle_module_operation(node, :prepended_modules)
+      when :include, :prepend, :extend
+        handle_module_operation(node, message)
       when :public
         @visibility_stack.push(Entry::Visibility::PUBLIC)
       when :protected
@@ -479,16 +481,21 @@ def handle_module_operation(node, operation)
       arguments = node.arguments&.arguments
       return unless arguments
 
-      names = arguments.filter_map do |node|
-        if node.is_a?(Prism::ConstantReadNode) || node.is_a?(Prism::ConstantPathNode)
-          node.full_name
+      arguments.each do |node|
+        next unless node.is_a?(Prism::ConstantReadNode) || node.is_a?(Prism::ConstantPathNode)
+
+        case operation
+        when :include
+          owner.mixin_operations << Entry::Include.new(node.full_name)
+        when :prepend
+          owner.mixin_operations << Entry::Prepend.new(node.full_name)
+        when :extend
+          owner.mixin_operations << Entry::Extend.new(node.full_name)
         end
       rescue Prism::ConstantPathNode::DynamicPartsInConstantPathError,
              Prism::ConstantPathNode::MissingNodesInConstantPathError
         # Do nothing
       end
-      collection = operation == :included_modules ? owner.included_modules : owner.prepended_modules
-      collection.concat(names)
     end
 
     sig { returns(Entry::Visibility) }
diff --git a/lib/ruby_indexer/lib/ruby_indexer/entry.rb b/lib/ruby_indexer/lib/ruby_indexer/entry.rb
index 8fac069ed..5012cfbf7 100644
--- a/lib/ruby_indexer/lib/ruby_indexer/entry.rb
+++ b/lib/ruby_indexer/lib/ruby_indexer/entry.rb
@@ -62,6 +62,25 @@ def file_name
       File.basename(@file_path)
     end
 
+    class ModuleOperation
+      extend T::Sig
+      extend T::Helpers
+
+      abstract!
+
+      sig { returns(String) }
+      attr_reader :module_name
+
+      sig { params(module_name: String).void }
+      def initialize(module_name)
+        @module_name = module_name
+      end
+    end
+
+    class Include < ModuleOperation; end
+    class Prepend < ModuleOperation; end
+    class Extend < ModuleOperation; end
+
     class Namespace < Entry
       extend T::Sig
       extend T::Helpers
@@ -69,13 +88,35 @@ class Namespace < Entry
       abstract!
 
       sig { returns(T::Array[String]) }
-      def included_modules
-        @included_modules ||= T.let([], T.nilable(T::Array[String]))
+      attr_reader :nesting
+
+      sig do
+        params(
+          nesting: T::Array[String],
+          file_path: String,
+          location: T.any(Prism::Location, RubyIndexer::Location),
+          comments: T::Array[String],
+        ).void
+      end
+      def initialize(nesting, file_path, location, comments)
+        @name = T.let(nesting.join("::"), String)
+        # The original nesting where this namespace was discovered
+        @nesting = nesting
+
+        super(@name, file_path, location, comments)
       end
 
       sig { returns(T::Array[String]) }
-      def prepended_modules
-        @prepended_modules ||= T.let([], T.nilable(T::Array[String]))
+      def mixin_operation_module_names
+        mixin_operations.map(&:module_name)
+      end
+
+      # Stores all explicit prepend, include and extend operations in the exact order they were discovered in the source
+      # code. Maintaining the order is essential to linearize ancestors the right way when a module is both included
+      # and prepended
+      sig { returns(T::Array[ModuleOperation]) }
+      def mixin_operations
+        @mixin_operations ||= T.let([], T.nilable(T::Array[ModuleOperation]))
       end
     end
 
@@ -92,15 +133,16 @@ class Class < Namespace
 
       sig do
         params(
-          name: String,
+          nesting: T::Array[String],
           file_path: String,
           location: T.any(Prism::Location, RubyIndexer::Location),
           comments: T::Array[String],
           parent_class: T.nilable(String),
         ).void
       end
-      def initialize(name, file_path, location, comments, parent_class)
-        super(name, file_path, location, comments)
+      def initialize(nesting, file_path, location, comments, parent_class)
+        super(nesting, file_path, location, comments)
+
         @parent_class = T.let(parent_class, T.nilable(String))
       end
     end
diff --git a/lib/ruby_indexer/lib/ruby_indexer/index.rb b/lib/ruby_indexer/lib/ruby_indexer/index.rb
index eaf23cb94..13db72fdf 100644
--- a/lib/ruby_indexer/lib/ruby_indexer/index.rb
+++ b/lib/ruby_indexer/lib/ruby_indexer/index.rb
@@ -6,6 +6,7 @@ class Index
     extend T::Sig
 
     class UnresolvableAliasError < StandardError; end
+    class NonExistingNamespaceError < StandardError; end
 
     # The minimum Jaro-Winkler similarity score for an entry to be considered a match for a given fuzzy search query
     ENTRY_SIMILARITY_THRESHOLD = 0.7
@@ -31,6 +32,9 @@ def initialize
 
       # Holds all require paths for every indexed item so that we can provide autocomplete for requires
       @require_paths_tree = T.let(PrefixTree[IndexablePath].new, PrefixTree[IndexablePath])
+
+      # Holds the linearized ancestors list for every namespace
+      @ancestors = T.let({}, T::Hash[String, T::Array[String]])
     end
 
     sig { params(indexable: IndexablePath).void }
@@ -255,6 +259,104 @@ def resolve_method(method_name, receiver_name)
       end
     end
 
+    # Linearizes the ancestors for a given name, returning the order of namespaces in which Ruby will search for method
+    # or constant declarations.
+    #
+    # When we add an ancestor in Ruby, that namespace might have ancestors of its own. Therefore, we need to linearize
+    # everything recursively to ensure that we are placing ancestors in the right order. For example, if you include a
+    # module that prepends another module, then the prepend module appears before the included module.
+    #
+    # The order of ancestors is [linearized_prepends, self, linearized_includes, linearized_superclass]
+    sig { params(fully_qualified_name: String).returns(T::Array[String]) }
+    def linearized_ancestors_of(fully_qualified_name)
+      # If we already computed the ancestors for this namespace, return it straight away
+      cached_ancestors = @ancestors[fully_qualified_name]
+      return cached_ancestors if cached_ancestors
+
+      ancestors = [fully_qualified_name]
+
+      # Cache the linearized ancestors array eagerly. This is important because we might have circular dependencies and
+      # this will prevent us from falling into an infinite recursion loop. Because we mutate the ancestors array later,
+      # the cache will reflect the final result
+      @ancestors[fully_qualified_name] = ancestors
+
+      # If we don't have an entry for `name`, raise
+      entries = resolve(fully_qualified_name, [])
+      raise NonExistingNamespaceError, "No entry found for #{fully_qualified_name}" unless entries
+
+      # If none of the entries for `name` are namespaces, raise
+      namespaces = entries.filter_map do |entry|
+        case entry
+        when Entry::Namespace
+          entry
+        when Entry::Alias
+          self[entry.target]&.grep(Entry::Namespace)
+        end
+      end.flatten
+
+      raise NonExistingNamespaceError,
+        "None of the entries for #{fully_qualified_name} are modules or classes" if namespaces.empty?
+
+      mixin_operations = namespaces.flat_map(&:mixin_operations)
+      main_namespace_index = 0
+
+      # The original nesting where we discovered this namespace, so that we resolve the correct names of the
+      # included/prepended/extended modules and parent classes
+      nesting = T.must(namespaces.first).nesting
+
+      mixin_operations.each do |operation|
+        resolved_module = resolve(operation.module_name, nesting)
+        next unless resolved_module
+
+        module_fully_qualified_name = T.must(resolved_module.first).name
+
+        case operation
+        when Entry::Prepend
+          # When a module is prepended, Ruby checks if it hasn't been prepended already to prevent adding it in front of
+          # the actual namespace twice. However, it does not check if it has been included because you are allowed to
+          # prepend the same module after it has already been included
+          linearized_prepends = linearized_ancestors_of(module_fully_qualified_name)
+
+          # When there are duplicate prepended modules, we have to insert the new prepends after the existing ones. For
+          # example, if the current ancestors are `["A", "Foo"]` and we try to prepend `["A", "B"]`, then `"B"` has to
+          # be inserted after `"A`
+          uniq_prepends = linearized_prepends - T.must(ancestors[0...main_namespace_index])
+          insert_position = linearized_prepends.length - uniq_prepends.length
+
+          T.unsafe(ancestors).insert(
+            insert_position,
+            *(linearized_prepends - T.must(ancestors[0...main_namespace_index])),
+          )
+
+          main_namespace_index += linearized_prepends.length
+        when Entry::Include
+          # When including a module, Ruby will always prevent duplicate entries in case the module has already been
+          # prepended or included
+          linearized_includes = linearized_ancestors_of(module_fully_qualified_name)
+          T.unsafe(ancestors).insert(main_namespace_index + 1, *(linearized_includes - ancestors))
+        end
+      end
+
+      # Find the first class entry that has a parent class. Notice that if the developer makes a mistake and inherits
+      # from two diffent classes in different files, we simply ignore it
+      superclass = T.cast(namespaces.find { |n| n.is_a?(Entry::Class) && n.parent_class }, T.nilable(Entry::Class))
+
+      if superclass
+        # If the user makes a mistake and creates a class that inherits from itself, this method would throw a stack
+        # error. We need to ensure that this isn't the case
+        parent_class = T.must(superclass.parent_class)
+
+        resolved_parent_class = resolve(parent_class, nesting)
+        parent_class_name = resolved_parent_class&.first&.name
+
+        if parent_class_name && fully_qualified_name != parent_class_name
+          ancestors.concat(linearized_ancestors_of(parent_class_name))
+        end
+      end
+
+      ancestors
+    end
+
     private
 
     # Attempts to resolve an UnresolvedAlias into a resolved Alias. If the unresolved alias is pointing to a constant
diff --git a/lib/ruby_indexer/test/classes_and_modules_test.rb b/lib/ruby_indexer/test/classes_and_modules_test.rb
index d76c25e17..5e6f7f17c 100644
--- a/lib/ruby_indexer/test/classes_and_modules_test.rb
+++ b/lib/ruby_indexer/test/classes_and_modules_test.rb
@@ -369,13 +369,13 @@ class ConstantPathReferences
       RUBY
 
       foo = T.must(@index["Foo"][0])
-      assert_equal(["A1", "A2", "A3", "A4", "A5", "A6"], foo.included_modules)
+      assert_equal(["A1", "A2", "A3", "A4", "A5", "A6"], foo.mixin_operation_module_names)
 
       qux = T.must(@index["Foo::Qux"][0])
-      assert_equal(["Corge", "Corge", "Baz"], qux.included_modules)
+      assert_equal(["Corge", "Corge", "Baz"], qux.mixin_operation_module_names)
 
       constant_path_references = T.must(@index["ConstantPathReferences"][0])
-      assert_equal(["Foo::Bar", "Foo::Bar2"], constant_path_references.included_modules)
+      assert_equal(["Foo::Bar", "Foo::Bar2"], constant_path_references.mixin_operation_module_names)
     end
 
     def test_keeping_track_of_prepended_modules
@@ -415,13 +415,59 @@ class ConstantPathReferences
       RUBY
 
       foo = T.must(@index["Foo"][0])
-      assert_equal(["A1", "A2", "A3", "A4", "A5", "A6"], foo.prepended_modules)
+      assert_equal(["A1", "A2", "A3", "A4", "A5", "A6"], foo.mixin_operation_module_names)
 
       qux = T.must(@index["Foo::Qux"][0])
-      assert_equal(["Corge", "Corge", "Baz"], qux.prepended_modules)
+      assert_equal(["Corge", "Corge", "Baz"], qux.mixin_operation_module_names)
 
       constant_path_references = T.must(@index["ConstantPathReferences"][0])
-      assert_equal(["Foo::Bar", "Foo::Bar2"], constant_path_references.prepended_modules)
+      assert_equal(["Foo::Bar", "Foo::Bar2"], constant_path_references.mixin_operation_module_names)
+    end
+
+    def test_keeping_track_of_extended_modules
+      index(<<~RUBY)
+        class Foo
+          # valid syntaxes that we can index
+          extend A1
+          self.extend A2
+          extend A3, A4
+          self.extend A5, A6
+
+          # valid syntaxes that we cannot index because of their dynamic nature
+          extend some_variable_or_method_call
+          self.extend some_variable_or_method_call
+
+          def something
+            extend A7 # We should not index this because of this dynamic nature
+          end
+
+          # Valid inner class syntax definition with its own modules prepended
+          class Qux
+            extend Corge
+            self.extend Corge
+            extend Baz
+
+            extend some_variable_or_method_call
+          end
+        end
+
+        class ConstantPathReferences
+          extend Foo::Bar
+          self.extend Foo::Bar2
+
+          extend dynamic::Bar
+          extend Foo::
+        end
+      RUBY
+
+      foo = T.must(@index["Foo"][0])
+      assert_equal(["A1", "A2", "A3", "A4", "A5", "A6"], foo.mixin_operation_module_names)
+
+      qux = T.must(@index["Foo::Qux"][0])
+      assert_equal(["Corge", "Corge", "Baz"], qux.mixin_operation_module_names)
+
+      constant_path_references = T.must(@index["ConstantPathReferences"][0])
+      assert_equal(["Foo::Bar", "Foo::Bar2"], constant_path_references.mixin_operation_module_names)
     end
   end
 end
diff --git a/lib/ruby_indexer/test/index_test.rb b/lib/ruby_indexer/test/index_test.rb
index 6f759471a..d5ebfdd2e 100644
--- a/lib/ruby_indexer/test/index_test.rb
+++ b/lib/ruby_indexer/test/index_test.rb
@@ -313,5 +313,376 @@ def test_index_single_does_not_fail_for_non_existing_file
       @index.index_single(IndexablePath.new(nil, "/fake/path/foo.rb"))
       assert_empty(@index.instance_variable_get(:@entries))
     end
+
+    def test_linearized_ancestors_basic_ordering
+      index(<<~RUBY)
+        module A; end
+        module B; end
+
+        class Foo
+          prepend A
+          prepend B
+        end
+
+        class Bar
+          include A
+          include B
+        end
+      RUBY
+
+      assert_equal(
+        [
+          "B",
+          "A",
+          "Foo",
+          # "Object",
+          # "Kernel",
+          # "BasicObject",
+        ],
+        @index.linearized_ancestors_of("Foo"),
+      )
+
+      assert_equal(
+        [
+          "Bar",
+          "B",
+          "A",
+          # "Object",
+          # "Kernel",
+          # "BasicObject",
+        ],
+        @index.linearized_ancestors_of("Bar"),
+      )
+    end
+
+    def test_linearized_ancestors
+      index(<<~RUBY)
+        module A; end
+        module B; end
+        module C; end
+
+        module D
+          include A
+        end
+
+        module E
+          prepend B
+        end
+
+        module F
+          include C
+          include A
+        end
+
+        class Bar
+          prepend F
+        end
+
+        class Foo < Bar
+          include E
+          prepend D
+        end
+      RUBY
+
+      # Object, Kernel and BasicObject are intentionally commented out for now until we develop a strategy for indexing
+      # declarations made in C code
+      assert_equal(
+        [
+          "D",
+          "A",
+          "Foo",
+          "B",
+          "E",
+          "F",
+          "A",
+          "C",
+          "Bar",
+          # "Object",
+          # "Kernel",
+          # "BasicObject",
+        ],
+        @index.linearized_ancestors_of("Foo"),
+      )
+    end
+
+    def test_linearized_ancestors_duplicates
+      index(<<~RUBY)
+        module A; end
+        module B
+          include A
+        end
+
+        class Foo
+          include B
+          include A
+        end
+
+        class Bar
+          prepend B
+          prepend A
+        end
+      RUBY
+
+      assert_equal(
+        [
+          "Foo",
+          "B",
+          "A",
+          # "Object",
+          # "Kernel",
+          # "BasicObject",
+        ],
+        @index.linearized_ancestors_of("Foo"),
+      )
+
+      assert_equal(
+        [
+          "B",
+          "A",
+          "Bar",
+          # "Object",
+          # "Kernel",
+          # "BasicObject",
+        ],
+        @index.linearized_ancestors_of("Bar"),
+      )
+    end
+
+    def test_linearizing_ancestors_is_cached
+      index(<<~RUBY)
+        module C; end
+        module A; end
+        module B
+          include A
+        end
+
+        class Foo
+          include B
+          include A
+        end
+      RUBY
+
+      @index.linearized_ancestors_of("Foo")
+      ancestors = @index.instance_variable_get(:@ancestors)
+      assert(ancestors.key?("Foo"))
+      assert(ancestors.key?("A"))
+      assert(ancestors.key?("B"))
+      refute(ancestors.key?("C"))
+    end
+
+    def test_duplicate_prepend_include
+      index(<<~RUBY)
+        module A; end
+
+        class Foo
+          prepend A
+          include A
+        end
+
+        class Bar
+          include A
+          prepend A
+        end
+      RUBY
+
+      assert_equal(
+        [
+          "A",
+          "Foo",
+          # "Object",
+          # "Kernel",
+          # "BasicObject",
+        ],
+        @index.linearized_ancestors_of("Foo"),
+      )
+
+      assert_equal(
+        [
+          "A",
+          "Bar",
+          "A",
+          # "Object",
+          # "Kernel",
+          # "BasicObject",
+        ],
+        @index.linearized_ancestors_of("Bar"),
+      )
+    end
+
+    def test_linearizing_ancestors_handles_circular_parent_class
+      index(<<~RUBY)
+        class Foo < Foo
+        end
+      RUBY
+
+      assert_equal(
+        [
+          "Foo",
+          # "Object",
+          # "Kernel",
+          # "BasicObject",
+        ],
+        @index.linearized_ancestors_of("Foo"),
+      )
+    end
+
+    def test_ancestors_linearization_complex_prepend_duplication
+      index(<<~RUBY)
+        module A; end
+        module B
+          prepend A
+        end
+        module C
+          prepend B
+        end
+
+        class Foo
+          prepend A
+          prepend C
+        end
+      RUBY
+
+      assert_equal(
+        [
+          "A",
+          "B",
+          "C",
+          "Foo",
+          # "Object",
+          # "Kernel",
+          # "BasicObject",
+        ],
+        @index.linearized_ancestors_of("Foo"),
+      )
+    end
+
+    def test_ancestors_linearization_complex_include_duplication
+      index(<<~RUBY)
+        module A; end
+        module B
+          include A
+        end
+        module C
+          include B
+        end
+
+        class Foo
+          include A
+          include C
+        end
+      RUBY
+
+      assert_equal(
+        [
+          "Foo",
+          "C",
+          "B",
+          "A",
+          # "Object",
+          # "Kernel",
+          # "BasicObject",
+        ],
+        @index.linearized_ancestors_of("Foo"),
+      )
+    end
+
+    def test_linearizing_ancestors_that_need_to_be_resolved
+      index(<<~RUBY)
+        module Foo
+          module Baz
+          end
+          module Qux
+          end
+
+          class Something; end
+
+          class Bar < Something
+            include Baz
+            prepend Qux
+          end
+        end
+      RUBY
+
+      assert_equal(
+        [
+          "Foo::Qux",
+          "Foo::Bar",
+          "Foo::Baz",
+          "Foo::Something",
+          # "Object",
+          # "Kernel",
+          # "BasicObject",
+        ],
+        @index.linearized_ancestors_of("Foo::Bar"),
+      )
+    end
+
+    def test_linearizing_ancestors_for_non_existing_namespaces
+      index(<<~RUBY)
+        module Kernel
+          def Array(a); end
+        end
+      RUBY
+
+      assert_raises(Index::NonExistingNamespaceError) do
+        @index.linearized_ancestors_of("Foo")
+      end
+
+      assert_raises(Index::NonExistingNamespaceError) do
+        @index.linearized_ancestors_of("Array")
+      end
+    end
+
+    def test_linearizing_circular_ancestors
+      index(<<~RUBY)
+        module M1
+          include M2
+        end
+
+        module M2
+          include M1
+        end
+
+        module A1
+          include A2
+        end
+
+        module A2
+          include A3
+        end
+
+        module A3
+          include A1
+        end
+
+        class Foo < Foo
+          include Foo
+        end
+
+        module Bar
+          include Bar
+        end
+      RUBY
+
+      assert_equal(["M2", "M1"], @index.linearized_ancestors_of("M2"))
+      assert_equal(["A3", "A1", "A2"], @index.linearized_ancestors_of("A3"))
+      assert_equal(["Foo"], @index.linearized_ancestors_of("Foo"))
+      assert_equal(["Bar"], @index.linearized_ancestors_of("Bar"))
+    end
+
+    def test_linearizing_circular_aliased_dependency
+      index(<<~RUBY)
+        module A
+        end
+
+        ALIAS = A
+
+        module A
+          include ALIAS
+        end
+      RUBY
+
+      assert_equal(["A", "ALIAS"], @index.linearized_ancestors_of("A"))
+    end
   end
 end