From bdb650aa2e9a41870ec86c71375ba5196cc210cb Mon Sep 17 00:00:00 2001 From: Lennart Klein <31488915+kleinlennart@users.noreply.github.com> Date: Fri, 2 Feb 2024 01:38:26 +0100 Subject: [PATCH 01/72] add devcontainer --- .devcontainer/devcontainer.json | 83 ++++++++++++++++++++++++++++++ .devcontainer/postCreateCommand.sh | 5 ++ .devcontainer/postStartCommand.sh | 5 ++ 3 files changed, 93 insertions(+) create mode 100644 .devcontainer/devcontainer.json create mode 100644 .devcontainer/postCreateCommand.sh create mode 100644 .devcontainer/postStartCommand.sh diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json new file mode 100644 index 00000000..a92ec29c --- /dev/null +++ b/.devcontainer/devcontainer.json @@ -0,0 +1,83 @@ +// https://aka.ms/devcontainer.json +// https://containers.dev/guide/dockerfile +// https://github.com/rocker-org/devcontainer-templates/ + +{ + "name": "Media Impact Monitor - R Devcontainer", + "image": "ghcr.io/rocker-org/devcontainer/tidyverse:4.3", + + // https://containers.dev/features + "features": { + "ghcr.io/rocker-org/devcontainer-features/apt-packages:1": { + "packages": "jq,cmake,libxt6" + }, + + // https://github.com/rocker-org/devcontainer-features/tree/main/src/rstudio-server + "ghcr.io/rocker-org/devcontainer-features/rstudio-server": { }, + + // https://github.com/rocker-org/devcontainer-features/tree/main/src/quarto-cli + "ghcr.io/rocker-org/devcontainer-features/quarto-cli:1": { + "installChromium": true, + "installTinyTex": false + }, + + // Chromium dependencies + "ghcr.io/rocker-org/devcontainer-features/apt-packages:1": { + "packages": "libgtk-3-dev,libnotify-dev,libgconf-2-4,libnss3,libxss1,libasound2" + }, + + // https://github.com/rocker-org/devcontainer-features/tree/main/src/r-packages + "ghcr.io/rocker-org/devcontainer-features/r-packages:1": { + "packages": "easystats", + "installSystemRequirements": true + } + + }, + + // Ports & Server ---------------------------------------------------------------------------- + + // start RStudio Server process in container + // "postAttachCommand": { + // "rstudio-start": "rserver" + // }, + + // https://containers.dev/implementors/json_reference/#port-attributes + "forwardPorts": [ 8787 ], + "portsAttributes": { + "8787": { + "label": "RStudio IDE", + "requireLocalPort": true, // defaults to false + "onAutoForward": "ignore" // defaults to notify + } + }, + + // Lifecycle Scripts ---------------------------------------------------------------------------- + // https://containers.dev/implementors/json_reference/#lifecycle-scripts + + // "onCreateCommand": "", + + // run after the container is created. + "postCreateCommand": "sh ./.devcontainer/postCreateCommand.sh", + + // run every time the container starts + "postStartCommand": "sh ./.devcontainer/postStartCommand.sh", + + // Configure tool-specific properties + "customizations": { + "vscode": { + "extensions": [ + "quarto.quarto", + "REditorSupport.r", + // User customs: + "GitHub.copilot-chat", + "GitHub.copilot", + "eamodio.gitlens" + ] + } + } + + // Uncomment to connect as root instead. + // https://aka.ms/dev-containers-non-root. + // https://containers.dev/implementors/json_reference/#remoteUser + // "remoteUser": "root" +} diff --git a/.devcontainer/postCreateCommand.sh b/.devcontainer/postCreateCommand.sh new file mode 100644 index 00000000..8b76e350 --- /dev/null +++ b/.devcontainer/postCreateCommand.sh @@ -0,0 +1,5 @@ +#!/usr/bin/bash +## postCreateCommand.sh + + + diff --git a/.devcontainer/postStartCommand.sh b/.devcontainer/postStartCommand.sh new file mode 100644 index 00000000..0746bfc2 --- /dev/null +++ b/.devcontainer/postStartCommand.sh @@ -0,0 +1,5 @@ +#!/usr/bin/bash +## postStartCommand.sh + + + From 8137a4c3937182d04d60683afb8c129d1fc14ad4 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Thu, 8 Feb 2024 15:19:01 +0000 Subject: [PATCH 02/72] Set up devcontainer and project folders for Python --- .devcontainer/devcontainer.json | 89 +++++++++++-------- .devcontainer/postStartCommand.sh | 1 + backend-python/README.md | 1 + .../media_impact_monitor/__init__.py | 1 + backend-python/poetry.lock | 7 ++ backend-python/pyproject.toml | 14 +++ backend-python/tests/__init__.py | 1 + dev.Dockerfile | 17 ++++ 8 files changed, 95 insertions(+), 36 deletions(-) create mode 100644 backend-python/README.md create mode 100644 backend-python/media_impact_monitor/__init__.py create mode 100644 backend-python/poetry.lock create mode 100644 backend-python/pyproject.toml create mode 100644 backend-python/tests/__init__.py create mode 100644 dev.Dockerfile diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json index a92ec29c..f958f8f5 100644 --- a/.devcontainer/devcontainer.json +++ b/.devcontainer/devcontainer.json @@ -1,48 +1,42 @@ // https://aka.ms/devcontainer.json // https://containers.dev/guide/dockerfile // https://github.com/rocker-org/devcontainer-templates/ - { - "name": "Media Impact Monitor - R Devcontainer", - "image": "ghcr.io/rocker-org/devcontainer/tidyverse:4.3", - + "name": "Media Impact Monitor - Devcontainer", + "build": { + "dockerfile": "../dev.Dockerfile" + }, // https://containers.dev/features "features": { "ghcr.io/rocker-org/devcontainer-features/apt-packages:1": { "packages": "jq,cmake,libxt6" }, - // https://github.com/rocker-org/devcontainer-features/tree/main/src/rstudio-server - "ghcr.io/rocker-org/devcontainer-features/rstudio-server": { }, - + "ghcr.io/rocker-org/devcontainer-features/rstudio-server": {}, // https://github.com/rocker-org/devcontainer-features/tree/main/src/quarto-cli "ghcr.io/rocker-org/devcontainer-features/quarto-cli:1": { "installChromium": true, "installTinyTex": false }, - // Chromium dependencies "ghcr.io/rocker-org/devcontainer-features/apt-packages:1": { "packages": "libgtk-3-dev,libnotify-dev,libgconf-2-4,libnss3,libxss1,libasound2" }, - // https://github.com/rocker-org/devcontainer-features/tree/main/src/r-packages "ghcr.io/rocker-org/devcontainer-features/r-packages:1": { - "packages": "easystats", - "installSystemRequirements": true + "packages": "easystats", + "installSystemRequirements": true } - }, - // Ports & Server ---------------------------------------------------------------------------- - // start RStudio Server process in container - // "postAttachCommand": { - // "rstudio-start": "rserver" - // }, - + "postAttachCommand": { + "rstudio-start": "rserver" + }, // https://containers.dev/implementors/json_reference/#port-attributes - "forwardPorts": [ 8787 ], + "forwardPorts": [ + 8787 + ], "portsAttributes": { "8787": { "label": "RStudio IDE", @@ -50,34 +44,57 @@ "onAutoForward": "ignore" // defaults to notify } }, - // Lifecycle Scripts ---------------------------------------------------------------------------- // https://containers.dev/implementors/json_reference/#lifecycle-scripts - - // "onCreateCommand": "", - // run after the container is created. "postCreateCommand": "sh ./.devcontainer/postCreateCommand.sh", - // run every time the container starts "postStartCommand": "sh ./.devcontainer/postStartCommand.sh", - // Configure tool-specific properties + "workspaceFolder": "/workspaces/${localWorkspaceFolderBasename}/", "customizations": { "vscode": { "extensions": [ + // General + "eamodio.gitlens", + "mhutchie.git-graph", + "ms-vscode-remote.vscode-remote-extensionpack", + "ms-vsliveshare.vsliveshare", + "github.copilot", + "github.copilot-chat", + "visualstudioexptteam.vscodeintellicode", + // R "quarto.quarto", "REditorSupport.r", - // User customs: - "GitHub.copilot-chat", - "GitHub.copilot", - "eamodio.gitlens" - ] + // Python + "ms-python.python", + "ms-toolsai.jupyter", + "charliermarsh.ruff", + "tamasfe.even-better-toml", + ], + "settings": { + "editor.codeActionsOnSave": { + "source.fixAll": "always", + "source.organizeImports": "always" + }, + "editor.formatOnSave": true, + "[python]": { + "editor.defaultFormatter": "charliermarsh.ruff" + }, + "[toml]": { + "editor.formatOnSave": false + }, + "editor.rulers": [ + 100 + ], + "files.autoSave": "onFocusChange", + "mypy-type-checker.importStrategy": "fromEnvironment", + "python.defaultInterpreterPath": "/opt/greenwashing-env/bin/python", + "python.terminal.activateEnvironment": false, + "python.testing.pytestEnabled": true, + "ruff.importStrategy": "fromEnvironment", + "terminal.integrated.defaultProfile.linux": "zsh", + } } } - - // Uncomment to connect as root instead. - // https://aka.ms/dev-containers-non-root. - // https://containers.dev/implementors/json_reference/#remoteUser - // "remoteUser": "root" -} +} \ No newline at end of file diff --git a/.devcontainer/postStartCommand.sh b/.devcontainer/postStartCommand.sh index 0746bfc2..34250e1d 100644 --- a/.devcontainer/postStartCommand.sh +++ b/.devcontainer/postStartCommand.sh @@ -1,5 +1,6 @@ #!/usr/bin/bash ## postStartCommand.sh +cd backend-python && poetry install diff --git a/backend-python/README.md b/backend-python/README.md new file mode 100644 index 00000000..0519ecba --- /dev/null +++ b/backend-python/README.md @@ -0,0 +1 @@ + \ No newline at end of file diff --git a/backend-python/media_impact_monitor/__init__.py b/backend-python/media_impact_monitor/__init__.py new file mode 100644 index 00000000..0519ecba --- /dev/null +++ b/backend-python/media_impact_monitor/__init__.py @@ -0,0 +1 @@ + \ No newline at end of file diff --git a/backend-python/poetry.lock b/backend-python/poetry.lock new file mode 100644 index 00000000..ddb15267 --- /dev/null +++ b/backend-python/poetry.lock @@ -0,0 +1,7 @@ +# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. +package = [] + +[metadata] +lock-version = "2.0" +python-versions = "^3.10" +content-hash = "53f2eabc9c26446fbcc00d348c47878e118afc2054778c3c803a0a8028af27d9" diff --git a/backend-python/pyproject.toml b/backend-python/pyproject.toml new file mode 100644 index 00000000..3be3a6e9 --- /dev/null +++ b/backend-python/pyproject.toml @@ -0,0 +1,14 @@ +[tool.poetry] +name = "media-impact-monitor" +version = "0.1.0" +description = "" +authors = ["Your Name "] +readme = "README.md" + +[tool.poetry.dependencies] +python = "^3.10" + + +[build-system] +requires = ["poetry-core"] +build-backend = "poetry.core.masonry.api" diff --git a/backend-python/tests/__init__.py b/backend-python/tests/__init__.py new file mode 100644 index 00000000..0519ecba --- /dev/null +++ b/backend-python/tests/__init__.py @@ -0,0 +1 @@ + \ No newline at end of file diff --git a/dev.Dockerfile b/dev.Dockerfile new file mode 100644 index 00000000..75174d15 --- /dev/null +++ b/dev.Dockerfile @@ -0,0 +1,17 @@ +FROM --platform=linux/amd64 ubuntu:22.04 +RUN apt-get update && export DEBIAN_FRONTEND=noninteractive && apt-get -y install \ + git \ + curl \ + python3 \ + python3-pip \ + && rm -rf /var/lib/apt/lists/* +WORKDIR /workspace + +# Install and setup poetry +RUN pip install poetry +RUN poetry config virtualenvs.create true + +# Install starship terminal prompt +RUN sh -c "$(curl -fsSL https://starship.rs/install.sh)" -- "--yes" && echo 'eval "$(starship init bash)"' >> ~/.bashrc + +CMD ["bash"] From 318f61f8a492001a6e989721adb91205ed7f5408 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Thu, 8 Feb 2024 17:19:25 +0100 Subject: [PATCH 03/72] Move dev Dockerfile to .devcontainer/ --- dev.Dockerfile => .devcontainer/Dockerfile | 2 ++ .devcontainer/devcontainer.json | 2 +- 2 files changed, 3 insertions(+), 1 deletion(-) rename dev.Dockerfile => .devcontainer/Dockerfile (99%) diff --git a/dev.Dockerfile b/.devcontainer/Dockerfile similarity index 99% rename from dev.Dockerfile rename to .devcontainer/Dockerfile index 75174d15..b61fc817 100644 --- a/dev.Dockerfile +++ b/.devcontainer/Dockerfile @@ -1,10 +1,12 @@ FROM --platform=linux/amd64 ubuntu:22.04 + RUN apt-get update && export DEBIAN_FRONTEND=noninteractive && apt-get -y install \ git \ curl \ python3 \ python3-pip \ && rm -rf /var/lib/apt/lists/* + WORKDIR /workspace # Install and setup poetry diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json index f958f8f5..36af967c 100644 --- a/.devcontainer/devcontainer.json +++ b/.devcontainer/devcontainer.json @@ -4,7 +4,7 @@ { "name": "Media Impact Monitor - Devcontainer", "build": { - "dockerfile": "../dev.Dockerfile" + "dockerfile": "Dockerfile" }, // https://containers.dev/features "features": { From d36b88872bcea1ee5fb193f0bb04ba21f5279d43 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Thu, 8 Feb 2024 17:43:43 +0000 Subject: [PATCH 04/72] Move Dockerfile and fix Poetry issue Poetry issue was "Python not found"; fixed by installing python-is-python3; see https://stackoverflow.com/questions/61921940/running-poetry-fails-with-usr-bin-env-python-no-such-file-or-directory --- .devcontainer/Dockerfile | 1 + 1 file changed, 1 insertion(+) diff --git a/.devcontainer/Dockerfile b/.devcontainer/Dockerfile index b61fc817..b67124e0 100644 --- a/.devcontainer/Dockerfile +++ b/.devcontainer/Dockerfile @@ -5,6 +5,7 @@ RUN apt-get update && export DEBIAN_FRONTEND=noninteractive && apt-get -y instal curl \ python3 \ python3-pip \ + python-is-python3 \ && rm -rf /var/lib/apt/lists/* WORKDIR /workspace From ee20cff19d3b3bd25cb4922f93deabfb87733e58 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Thu, 29 Feb 2024 06:54:05 +0000 Subject: [PATCH 05/72] Setup devcontainer using devcontainer-features (Python, R, Node, and more) --- .devcontainer/Dockerfile | 23 ++---------- .devcontainer/devcontainer.json | 58 +++++++++++++++++++----------- .devcontainer/postCreateCommand.sh | 4 +-- .devcontainer/postStartCommand.sh | 5 ++- .github/dependabot.yml | 12 +++++++ 5 files changed, 56 insertions(+), 46 deletions(-) create mode 100644 .github/dependabot.yml diff --git a/.devcontainer/Dockerfile b/.devcontainer/Dockerfile index b67124e0..c3fe7fde 100644 --- a/.devcontainer/Dockerfile +++ b/.devcontainer/Dockerfile @@ -1,20 +1,3 @@ -FROM --platform=linux/amd64 ubuntu:22.04 - -RUN apt-get update && export DEBIAN_FRONTEND=noninteractive && apt-get -y install \ - git \ - curl \ - python3 \ - python3-pip \ - python-is-python3 \ - && rm -rf /var/lib/apt/lists/* - -WORKDIR /workspace - -# Install and setup poetry -RUN pip install poetry -RUN poetry config virtualenvs.create true - -# Install starship terminal prompt -RUN sh -c "$(curl -fsSL https://starship.rs/install.sh)" -- "--yes" && echo 'eval "$(starship init bash)"' >> ~/.bashrc - -CMD ["bash"] +# having a separate Dockerfile is necessary for specifiying the platform +# R is only available for amd64, not for arm64 (Mac M1), see https://cran.r-project.org/bin/linux/ubuntu/fullREADME.html +FROM --platform=linux/amd64 mcr.microsoft.com/devcontainers/base:jammy diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json index 36af967c..f8bb81af 100644 --- a/.devcontainer/devcontainer.json +++ b/.devcontainer/devcontainer.json @@ -1,32 +1,47 @@ -// https://aka.ms/devcontainer.json -// https://containers.dev/guide/dockerfile -// https://github.com/rocker-org/devcontainer-templates/ +// For format details, see https://aka.ms/devcontainer.json. For config options, see the +// README at: https://github.com/devcontainers/templates/tree/main/src/ubuntu { - "name": "Media Impact Monitor - Devcontainer", + "name": "Ubuntu", + // Or use a Dockerfile or Docker Compose file. More info: https://containers.dev/guide/dockerfile "build": { - "dockerfile": "Dockerfile" + "dockerfile": "./Dockerfile" }, - // https://containers.dev/features "features": { - "ghcr.io/rocker-org/devcontainer-features/apt-packages:1": { - "packages": "jq,cmake,libxt6" + "ghcr.io/devcontainers/features/azure-cli:1": {}, + "ghcr.io/devcontainers/features/node:1": {}, + "ghcr.io/devcontainers/features/python:1": { + "installTools": true, + "version": "3.10" }, - // https://github.com/rocker-org/devcontainer-features/tree/main/src/rstudio-server - "ghcr.io/rocker-org/devcontainer-features/rstudio-server": {}, - // https://github.com/rocker-org/devcontainer-features/tree/main/src/quarto-cli "ghcr.io/rocker-org/devcontainer-features/quarto-cli:1": { - "installChromium": true, - "installTinyTex": false + "installTinyTex": false, // not supported, must be installed manually + "installChromium": true }, - // Chromium dependencies - "ghcr.io/rocker-org/devcontainer-features/apt-packages:1": { - "packages": "libgtk-3-dev,libnotify-dev,libgconf-2-4,libnss3,libxss1,libasound2" + "ghcr.io/rocker-org/devcontainer-features/r-apt:0": { + "installDevTools": true, + "installVscDebugger": true, + "useTesting": true, + "vscodeRSupport": "minimal" }, - // https://github.com/rocker-org/devcontainer-features/tree/main/src/r-packages "ghcr.io/rocker-org/devcontainer-features/r-packages:1": { - "packages": "easystats", + "packages": [ + // "easystats" + ], "installSystemRequirements": true - } + }, + "ghcr.io/rocker-org/devcontainer-features/rstudio-server:0": { + "singleUser": true, + "version": "stable" + }, + "ghcr.io/devcontainers-contrib/features/poetry:2": {}, + "ghcr.io/devcontainers-contrib/features/ruff:1": {}, + "ghcr.io/devcontainers-contrib/features/starship:1": {}, + "ghcr.io/dhoeric/features/google-cloud-cli:1": {}, + "ghcr.io/stuartleeks/dev-container-features/azure-cli-persistence:0": {}, + "ghcr.io/joshuanianji/devcontainer-features/gcloud-cli-persistence:1": {}, + "ghcr.io/nikobockerman/devcontainer-features/poetry-persistent-cache:1": {}, + "ghcr.io/rocker-org/devcontainer-features/r-history:0": {}, + "ghcr.io/stuartleeks/dev-container-features/shell-history:0": {} }, // Ports & Server ---------------------------------------------------------------------------- // start RStudio Server process in container @@ -92,9 +107,10 @@ "python.defaultInterpreterPath": "/opt/greenwashing-env/bin/python", "python.terminal.activateEnvironment": false, "python.testing.pytestEnabled": true, - "ruff.importStrategy": "fromEnvironment", - "terminal.integrated.defaultProfile.linux": "zsh", + "ruff.importStrategy": "fromEnvironment" } } } + // Uncomment to connect as root instead. More info: https://aka.ms/dev-containers-non-root. + // "remoteUser": "root" } \ No newline at end of file diff --git a/.devcontainer/postCreateCommand.sh b/.devcontainer/postCreateCommand.sh index 8b76e350..84f524eb 100644 --- a/.devcontainer/postCreateCommand.sh +++ b/.devcontainer/postCreateCommand.sh @@ -1,5 +1,5 @@ #!/usr/bin/bash ## postCreateCommand.sh - - +echo 'eval "$(starship init bash)"' >> ~/.bashrc; +cd backend-python && poetry install; # install everything once at setup diff --git a/.devcontainer/postStartCommand.sh b/.devcontainer/postStartCommand.sh index 34250e1d..08963572 100644 --- a/.devcontainer/postStartCommand.sh +++ b/.devcontainer/postStartCommand.sh @@ -1,6 +1,5 @@ #!/usr/bin/bash ## postStartCommand.sh -cd backend-python && poetry install - - +cd backend-python && poetry install; # install changed packages +bash diff --git a/.github/dependabot.yml b/.github/dependabot.yml new file mode 100644 index 00000000..f33a02cd --- /dev/null +++ b/.github/dependabot.yml @@ -0,0 +1,12 @@ +# To get started with Dependabot version updates, you'll need to specify which +# package ecosystems to update and where the package manifests are located. +# Please see the documentation for more information: +# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates +# https://containers.dev/guide/dependabot + +version: 2 +updates: + - package-ecosystem: "devcontainers" + directory: "/" + schedule: + interval: weekly From 4b9fe85316098a9a87cb6463e34d71d4f5490b78 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Tue, 5 Mar 2024 14:02:18 +0100 Subject: [PATCH 06/72] build(pyproject.toml): add basic dependencies copied from protest-impact-policy project --- backend-python/poetry.lock | 3380 ++++++++++++++++++++++++++++++++- backend-python/pyproject.toml | 20 +- 2 files changed, 3396 insertions(+), 4 deletions(-) diff --git a/backend-python/poetry.lock b/backend-python/poetry.lock index ddb15267..97253344 100644 --- a/backend-python/poetry.lock +++ b/backend-python/poetry.lock @@ -1,7 +1,3381 @@ -# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. -package = [] +# This file is automatically @generated by Poetry 1.7.0 and should not be changed by hand. + +[[package]] +name = "annotated-types" +version = "0.6.0" +description = "Reusable constraint types to use with typing.Annotated" +optional = false +python-versions = ">=3.8" +files = [ + {file = "annotated_types-0.6.0-py3-none-any.whl", hash = "sha256:0641064de18ba7a25dee8f96403ebc39113d0cb953a01429249d5c7564666a43"}, + {file = "annotated_types-0.6.0.tar.gz", hash = "sha256:563339e807e53ffd9c267e99fc6d9ea23eb8443c08f112651963e24e22f84a5d"}, +] + +[[package]] +name = "anyio" +version = "4.3.0" +description = "High level compatibility layer for multiple asynchronous event loop implementations" +optional = false 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index 3be3a6e9..034676ae 100644 --- a/backend-python/pyproject.toml +++ b/backend-python/pyproject.toml @@ -5,9 +5,27 @@ description = "" authors = ["Your Name "] readme = "README.md" -[tool.poetry.dependencies] +[tool.poetry.dependencies] # https://python-poetry.org/docs/dependency-specification/ python = "^3.10" +ipykernel = "^6.27.1" +jupyter = "^1.0.0" +joblib = "^1.3.2" +types-requests = "^2.31.0.10" +pandas = "^2.1.4" +python-dotenv = "^1.0.0" +matplotlib = "^3.8.2" +mediacloud = "^4.1.2" +xmltodict = "^0.13.0" +pypdf = "^3.17.4" +backoff = "^2.2.1" +openai = "^1.12.0" +zenrows = "^1.3.2" +html2text = "^2020.1.16" +cloudpathlib = {extras = ["gs"], version = "^0.17.0"} +openpyxl = "^3.1.2" +[tool.poetry.group.dev.dependencies] +pytest = "^8.0.2" [build-system] requires = ["poetry-core"] From 24e43d99af78446a3e713bd2773c0608e56b9116 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Tue, 5 Mar 2024 14:03:46 +0100 Subject: [PATCH 07/72] feat(paths.py): define local/remote paths and test them --- backend-python/media_impact_monitor/paths.py | 10 +++++++ backend-python/tests/test_paths.py | 31 ++++++++++++++++++++ 2 files changed, 41 insertions(+) create mode 100644 backend-python/media_impact_monitor/paths.py create mode 100644 backend-python/tests/test_paths.py diff --git a/backend-python/media_impact_monitor/paths.py b/backend-python/media_impact_monitor/paths.py new file mode 100644 index 00000000..e0ab6da7 --- /dev/null +++ b/backend-python/media_impact_monitor/paths.py @@ -0,0 +1,10 @@ +"""Define important local and remote paths to avoid problems with absolute and relative paths.""" + +from pathlib import Path + +from cloudpathlib import CloudPath + +src = Path(__file__).parent.parent +src = src.parent +cache = src / ".cache" +data = CloudPath("gs://protest-impact-policy") diff --git a/backend-python/tests/test_paths.py b/backend-python/tests/test_paths.py new file mode 100644 index 00000000..b9a21ef5 --- /dev/null +++ b/backend-python/tests/test_paths.py @@ -0,0 +1,31 @@ +import pytest +from cloudpathlib import CloudPath +from media_impact_monitor.paths import cache, data, src + + +def test_src_path(): + assert src.exists(), "The 'src' path should exist." + assert src.is_dir(), "The 'src' path should be a directory." + assert any(src.iterdir()), "The 'src' directory should not be empty." + + +def test_cache_path(): + """ + The 'cache' path may not exist initially. If it doesn't exist, it will be created. + """ + if not cache.exists(): + cache.mkdir(parents=True) + assert cache.exists(), "The 'cache' path should exist after creation." + assert cache.is_dir(), "The 'cache' path should be a directory." + + +def test_data_path(): + """ + This test requires valid credentials for the gs://protest-impact-policy bucket. + If no credentials are available, this test will be skipped. + """ + try: + contents = list(data.iterdir()) + except Exception as e: + pytest.fail(f"An exception occurred while accessing the 'data' CloudPath: {e}") + assert any(contents), "The 'data' CloudPath should not be empty." From 896a37c6a826d9d78d00948be7d690d2bf106c83 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Tue, 5 Mar 2024 14:44:14 +0100 Subject: [PATCH 08/72] refactor(util/paths.py): move file and remove cache path --- backend-python/media_impact_monitor/__init__.py | 6 +++++- .../media_impact_monitor/{ => util}/paths.py | 1 - backend-python/tests/{ => util}/test_paths.py | 13 +------------ 3 files changed, 6 insertions(+), 14 deletions(-) rename backend-python/media_impact_monitor/{ => util}/paths.py (91%) rename backend-python/tests/{ => util}/test_paths.py (60%) diff --git a/backend-python/media_impact_monitor/__init__.py b/backend-python/media_impact_monitor/__init__.py index 0519ecba..6fd41a35 100644 --- a/backend-python/media_impact_monitor/__init__.py +++ b/backend-python/media_impact_monitor/__init__.py @@ -1 +1,5 @@ - \ No newline at end of file +"""Main module for media_impact_monitor package. +Re-export important modules and functions. +""" + +from media_impact_monitor.util.paths import data, src diff --git a/backend-python/media_impact_monitor/paths.py b/backend-python/media_impact_monitor/util/paths.py similarity index 91% rename from backend-python/media_impact_monitor/paths.py rename to backend-python/media_impact_monitor/util/paths.py index e0ab6da7..b44682ce 100644 --- a/backend-python/media_impact_monitor/paths.py +++ b/backend-python/media_impact_monitor/util/paths.py @@ -6,5 +6,4 @@ src = Path(__file__).parent.parent src = src.parent -cache = src / ".cache" data = CloudPath("gs://protest-impact-policy") diff --git a/backend-python/tests/test_paths.py b/backend-python/tests/util/test_paths.py similarity index 60% rename from backend-python/tests/test_paths.py rename to backend-python/tests/util/test_paths.py index b9a21ef5..616334ca 100644 --- a/backend-python/tests/test_paths.py +++ b/backend-python/tests/util/test_paths.py @@ -1,6 +1,5 @@ import pytest -from cloudpathlib import CloudPath -from media_impact_monitor.paths import cache, data, src +from media_impact_monitor.util.paths import data, src def test_src_path(): @@ -9,16 +8,6 @@ def test_src_path(): assert any(src.iterdir()), "The 'src' directory should not be empty." -def test_cache_path(): - """ - The 'cache' path may not exist initially. If it doesn't exist, it will be created. - """ - if not cache.exists(): - cache.mkdir(parents=True) - assert cache.exists(), "The 'cache' path should exist after creation." - assert cache.is_dir(), "The 'cache' path should be a directory." - - def test_data_path(): """ This test requires valid credentials for the gs://protest-impact-policy bucket. From 96d1e98960d0c50591cbf0ca07714658716a9a21 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Tue, 5 Mar 2024 14:45:06 +0100 Subject: [PATCH 09/72] feat(util/cache.py): add general caching functions they cache stuff in the cloud --- .../media_impact_monitor/util/cache.py | 68 ++ backend-python/poetry.lock | 585 +++++++++++++++++- backend-python/pyproject.toml | 2 + backend-python/tests/util/test_cache.py | 41 ++ 4 files changed, 695 insertions(+), 1 deletion(-) create mode 100644 backend-python/media_impact_monitor/util/cache.py create mode 100644 backend-python/tests/util/test_cache.py diff --git a/backend-python/media_impact_monitor/util/cache.py b/backend-python/media_impact_monitor/util/cache.py new file mode 100644 index 00000000..833a822b --- /dev/null +++ b/backend-python/media_impact_monitor/util/cache.py @@ -0,0 +1,68 @@ +"""Cache functions.""" + +from os import environ +from time import sleep as _sleep + +from dotenv import load_dotenv +from perscache import Cache +from perscache.storage import GoogleCloudStorage +from requests import get as _get +from requests import post as _post +from zenrows import ZenRowsClient + +from media_impact_monitor.util.paths import src, data + +load_dotenv() + +storage = GoogleCloudStorage("/media-impact-monitor/cache") +cloudcache = Cache(storage=storage) + + +@cloudcache(ignore=["sleep"]) +def get(url, sleep=None, **kwargs): + r"""Send a GET request, cached in the cloud. + + :param url: URL for the new :class:`Request` object. + :param params: (optional) Dictionary, list of tuples or bytes to send + in the query string for the :class:`Request`. + :param sleep: (optional) Number of seconds to sleep after the request. + :param \*\*kwargs: Optional arguments that ``request`` takes. + :return: :class:`Response ` object + :rtype: requests.Response + """ + response = _get(url, **kwargs) + response.raise_for_status() + if sleep is not None: + _sleep(sleep) + return 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"zenrows" version = "1.3.2" @@ -3378,4 +3961,4 @@ requests = "*" [metadata] lock-version = "2.0" python-versions = "^3.10" -content-hash = "d98e98c22a7856fbb9f3ed3fa065b68dab9b1cdd7167a9f6f21f54f240bea4ab" +content-hash = "3963f69b327af41232a05994b2804ea3fd112e9487f52beac449e50294c03037" diff --git a/backend-python/pyproject.toml b/backend-python/pyproject.toml index 034676ae..9e7ad1bf 100644 --- a/backend-python/pyproject.toml +++ b/backend-python/pyproject.toml @@ -23,6 +23,8 @@ zenrows = "^1.3.2" html2text = "^2020.1.16" cloudpathlib = {extras = ["gs"], version = "^0.17.0"} openpyxl = "^3.1.2" +perscache = "^0.6.1" +gcsfs = "^2024.2.0" [tool.poetry.group.dev.dependencies] pytest = "^8.0.2" diff --git a/backend-python/tests/util/test_cache.py b/backend-python/tests/util/test_cache.py new file mode 100644 index 00000000..f2a524a6 --- /dev/null +++ b/backend-python/tests/util/test_cache.py @@ -0,0 +1,41 @@ +from media_impact_monitor.util.cache import get, post, get_proxied + +# URLs for the stable testing endpoints (preferably dedicated for testing purposes) +GET_URL = "https://httpbin.org/get" +POST_URL = "https://httpbin.org/post" + +# Test data for the POST request +POST_DATA = {"key": "value"} + + +def test_get_retrieval(): + """ + Test if the `get` function can successfully retrieve content. + """ + response = get(GET_URL) + assert response.status_code == 200 + assert ( + "args" in response.json() + ), "The response should contain 'args' to confirm it's from httpbin.org" + + +def test_post_retrieval(): + """ + Test if the `post` function can successfully retrieve content. + """ + response = post(POST_URL, json=POST_DATA) + assert response.status_code == 200 + assert ( + response.json().get("json") == POST_DATA + ), "The response body should contain the JSON data we sent" + + +def test_get_proxied(): + """ + Test if the `get_proxied` function can successfully retrieve content. + """ + response = get_proxied(GET_URL) + assert response.status_code == 200 + assert ( + "args" in response.json() + ), "The response should contain 'args' to confirm it's from httpbin.org" From 95425bd892e6c9f3d8e38c5285d9b2c1e1b31a6c Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Tue, 5 Mar 2024 16:02:21 +0100 Subject: [PATCH 10/72] test(backend-python): add beartype type checking --- backend-python/media_impact_monitor/__init__.py | 5 +++++ backend-python/poetry.lock | 2 +- backend-python/pyproject.toml | 4 ++++ 3 files changed, 10 insertions(+), 1 deletion(-) diff --git a/backend-python/media_impact_monitor/__init__.py b/backend-python/media_impact_monitor/__init__.py index 6fd41a35..07c23962 100644 --- a/backend-python/media_impact_monitor/__init__.py +++ b/backend-python/media_impact_monitor/__init__.py @@ -2,4 +2,9 @@ Re-export important modules and functions. """ +from beartype.claw import beartype_this_package + + from media_impact_monitor.util.paths import data, src + +beartype_this_package() diff --git a/backend-python/poetry.lock b/backend-python/poetry.lock index 4419bfdb..98c5230b 100644 --- a/backend-python/poetry.lock +++ b/backend-python/poetry.lock @@ -3961,4 +3961,4 @@ requests = "*" [metadata] lock-version = "2.0" python-versions = "^3.10" -content-hash = "3963f69b327af41232a05994b2804ea3fd112e9487f52beac449e50294c03037" +content-hash = "914fe8cf3434fa819886c5a20c9373d61605fdd070f2700f8586da55a6c449c7" diff --git a/backend-python/pyproject.toml b/backend-python/pyproject.toml index 9e7ad1bf..0ec8089c 100644 --- a/backend-python/pyproject.toml +++ b/backend-python/pyproject.toml @@ -25,10 +25,14 @@ cloudpathlib = {extras = ["gs"], version = "^0.17.0"} openpyxl = "^3.1.2" perscache = "^0.6.1" gcsfs = "^2024.2.0" +beartype = "^0.17.2" [tool.poetry.group.dev.dependencies] pytest = "^8.0.2" +[tool.pytest.ini_options] +filterwarnings = "ignore::beartype.roar.BeartypeClawDecorWarning" + [build-system] requires = ["poetry-core"] build-backend = "poetry.core.masonry.api" From 026ab15db59091997746f84375d431c86d1d2da7 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Tue, 5 Mar 2024 16:02:58 +0100 Subject: [PATCH 11/72] refactor(tests): move tests files to other files --- .../test_cache.py => media_impact_monitor/util/cache_test.py} | 0 .../test_paths.py => media_impact_monitor/util/paths_test.py} | 0 backend-python/tests/__init__.py | 1 - 3 files changed, 1 deletion(-) rename backend-python/{tests/util/test_cache.py => media_impact_monitor/util/cache_test.py} (100%) rename backend-python/{tests/util/test_paths.py => media_impact_monitor/util/paths_test.py} (100%) delete mode 100644 backend-python/tests/__init__.py diff --git a/backend-python/tests/util/test_cache.py b/backend-python/media_impact_monitor/util/cache_test.py similarity index 100% rename from backend-python/tests/util/test_cache.py rename to backend-python/media_impact_monitor/util/cache_test.py diff --git a/backend-python/tests/util/test_paths.py b/backend-python/media_impact_monitor/util/paths_test.py similarity index 100% rename from backend-python/tests/util/test_paths.py rename to backend-python/media_impact_monitor/util/paths_test.py diff --git a/backend-python/tests/__init__.py b/backend-python/tests/__init__.py deleted file mode 100644 index 0519ecba..00000000 --- a/backend-python/tests/__init__.py +++ /dev/null @@ -1 +0,0 @@ - \ No newline at end of file From 725b43edc9fc5c7b3948f25bd9d6aab91e2df13b Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Tue, 5 Mar 2024 16:06:03 +0100 Subject: [PATCH 12/72] feat(acled.py): add ACLED data loader --- .../data_loaders/protest/acled.py | 71 +++++++++++++++++++ .../data_loaders/protest/acled_test.py | 33 +++++++++ 2 files changed, 104 insertions(+) create mode 100644 backend-python/media_impact_monitor/data_loaders/protest/acled.py create mode 100644 backend-python/media_impact_monitor/data_loaders/protest/acled_test.py diff --git a/backend-python/media_impact_monitor/data_loaders/protest/acled.py b/backend-python/media_impact_monitor/data_loaders/protest/acled.py new file mode 100644 index 00000000..9216eb89 --- /dev/null +++ b/backend-python/media_impact_monitor/data_loaders/protest/acled.py @@ -0,0 +1,71 @@ +import os + +import pandas as pd +from dotenv import load_dotenv + +from media_impact_monitor.util.cache import cloudcache, get +from beartype import beartype + +load_dotenv() + +acled_region_keys = { + "Western Africa": 1, + "Middle Africa": 2, + "Eastern Africa": 3, + "Southern Africa": 4, + "Northern Africa": 5, + "South Asia": 7, + "Southeast Asia": 9, + "Middle East": 11, + "Europe": 12, + "Caucasus and Central Asia": 13, + "Central America": 14, + "South America": 15, + "Caribbean": 16, + "East Asia": 17, + "North America": 18, + "Oceania": 19, + "Antarctica": 20, +} + + +@cloudcache +@beartype +def get_protests( + countries: list[str] = [], regions: list[str] = [], keyword: str | None = None +) -> pd.DataFrame: + """Fetch protests from the ACLED API. + + API documentation: https://apidocs.acleddata.com/ + """ + limit = 1_000_000 + parameters = { + "email": os.environ["ACLED_EMAIL"], + "key": os.environ["ACLED_KEY"], + "event_type": "Protests", + "fields": "event_date|assoc_actor_1|notes", + "limit": limit, + } + assert (countries or regions) and not ( + countries and regions + ), "Specify countries or regions, not both." + if countries: + parameters["country"] = "|".join(countries) + if regions: + parameters["region"] = "|".join( + str(acled_region_keys[region]) for region in regions + ) + response = get("https://api.acleddata.com/acled/read", params=parameters) + df = pd.DataFrame(response.json()["data"]) + if df.empty: + raise ValueError("No data returned.") + if len(df) == limit: + raise ValueError(f"Limit of {limit} reached.") + df["event_date"] = pd.to_datetime(df["event_date"]) + if keyword: + df = df[ + df["assoc_actor_1"].str.lower().str.contains(keyword.lower()) + | df["notes"].str.lower().str.contains(keyword.lower()) + ] + df = df.rename(columns={"event_date": "date"}) + return df diff --git a/backend-python/media_impact_monitor/data_loaders/protest/acled_test.py b/backend-python/media_impact_monitor/data_loaders/protest/acled_test.py new file mode 100644 index 00000000..c7ba250a --- /dev/null +++ b/backend-python/media_impact_monitor/data_loaders/protest/acled_test.py @@ -0,0 +1,33 @@ +import os +import pytest +from media_impact_monitor.data_loaders.protest.acled import get_protests + + +def test_get_protests_with_keyword(): + test_countries = ["Germany", "Burkina Faso"] + test_keyword = "climate" + assert ( + "ACLED_EMAIL" in os.environ and "ACLED_KEY" in os.environ + ), "Environment variables for ACLED API access are not set." + df = get_protests(countries=test_countries, keyword=test_keyword) + assert not df.empty, "The dataframe returned is unexpectedly empty." + assert ( + df["notes"].str.lower().str.contains(test_keyword.lower()).all() + ), "Keyword not found in the notes." + expected_columns = ["date", "assoc_actor_1", "notes"] + assert all( + column in df.columns for column in expected_columns + ), "Not all expected columns are present in the returned DataFrame." + movements = ["Fridays for Future", "Extinction Rebellion"] + assert ( + df["assoc_actor_1"].str.contains(movements[0]).sum() > 10 + ), "Fridays for Future not found in the assoc_actor_1 column." + assert ( + df["assoc_actor_1"].str.contains(movements[1]).sum() > 10 + ), "Extinction Rebellion not found in the assoc_actor_1 column." + + +def test_get_protests_fail_with_both_countries_and_regions(): + """Test that the function raises an assertion error when both countries and regions are specified.""" + with pytest.raises(AssertionError): + get_protests(countries=["United States"], regions=["Western Africa"]) From 21b0ec5df144619476a29006d63df41e0e786920 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Tue, 5 Mar 2024 20:42:48 +0100 Subject: [PATCH 13/72] feat(mediacloud_.py): add mediacloud data loader --- .../data_loaders/news_online/mediacloud_.py | 51 +++++++++++++++++++ .../news_online/mediacloud_test.py | 34 +++++++++++++ backend-python/poetry.lock | 2 +- backend-python/pyproject.toml | 2 +- 4 files changed, 87 insertions(+), 2 deletions(-) create mode 100644 backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_.py create mode 100644 backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_test.py diff --git a/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_.py b/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_.py new file mode 100644 index 00000000..8f261adc --- /dev/null +++ b/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_.py @@ -0,0 +1,51 @@ +import os +from datetime import date +from typing import Literal + +import mediacloud.api +import pandas as pd +from dotenv import load_dotenv +from beartype import beartype + +from media_impact_monitor.util.cache import cloudcache, get + +load_dotenv() + +token = os.environ["MEDIACLOUD_API_TOKEN"] +search = mediacloud.api.SearchApi(token) +directory = mediacloud.api.DirectoryApi(token) + +start = date(2023, 1, 1) +end = date(2024, 1, 1) + +Platform = Literal["onlinenews-mediacloud", "onlinenews-waybackmachine"] + + +@cloudcache +@beartype +def get_counts( + query: str, + start_date: date = start, + end_date: date = end, + countries: list | None = None, +): + collection_ids: list[str] = [] + if countries: + collection_ids = [] + for country in countries: + results = directory.collection_list(name=f"{country} - national")["results"] + assert ( + len(results) == 1 + ), f"Expected 1 result, got {len(results)} for {country}" + collection_ids.append(results[0]["id"]) + data = search.story_count_over_time( + query=query, + start_date=start_date, + end_date=end_date, + collection_ids=collection_ids, + platform="wayback", + ) + df = pd.DataFrame(data) + df["date"] = pd.to_datetime(df["date"]) + df = df.set_index("date") + return df diff --git a/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_test.py b/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_test.py new file mode 100644 index 00000000..dbb633f0 --- /dev/null +++ b/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_test.py @@ -0,0 +1,34 @@ +from media_impact_monitor.data_loaders.news_online.mediacloud_ import get_counts +from datetime import date + + +def test_get_counts(): + df = get_counts( + "Fridays for Future", + date(2023, 6, 1), + date(2023, 12, 1), + ["Germany", "United Kingdom"], + ) + assert not df.empty, "The dataframe returned is unexpectedly empty." + assert ( + df.index >= "2023-06-01" + ).all(), "The returned dataframe contains dates before the start date." + assert ( + df.index <= "2023-12-01" + ).all(), "The returned dataframe contains dates after the end date." + assert (df["count"] >= 0).all(), "The returned dataframe contains negative counts." + print(df["count"].diff().abs()) + assert ( + df["count"].diff().abs().fillna(0) <= 200 + ).all(), "The returned dataframe contains a count change of more than 200." + # assume more counts in September (due to global climate strike) than in August + assert ( + df.resample("ME").sum()["count"]["2023-09"].item() + > df.resample("ME").sum()["count"]["2023-08"].item() + ), "The count in September is not higher than in August." + assert ( + df.resample("ME").sum()["count"] < 10_000 + ).all(), "The count per month is higher than 10,000 for some months." + assert ( + df.resample("ME").sum()["count"] > 10 + ).all(), "The count per month is lower than 30 for some months." diff --git a/backend-python/poetry.lock b/backend-python/poetry.lock index 98c5230b..6e8bae64 100644 --- a/backend-python/poetry.lock +++ b/backend-python/poetry.lock @@ -3961,4 +3961,4 @@ requests = "*" [metadata] lock-version = "2.0" python-versions = "^3.10" -content-hash = "914fe8cf3434fa819886c5a20c9373d61605fdd070f2700f8586da55a6c449c7" +content-hash = "a05e79ac101a82d7de7845a579e3bdfffeaebef09499403b0ea894dc79141be8" diff --git a/backend-python/pyproject.toml b/backend-python/pyproject.toml index 0ec8089c..1ae6b5b3 100644 --- a/backend-python/pyproject.toml +++ b/backend-python/pyproject.toml @@ -14,7 +14,7 @@ types-requests = "^2.31.0.10" pandas = "^2.1.4" python-dotenv = "^1.0.0" matplotlib = "^3.8.2" -mediacloud = "^4.1.2" +mediacloud = "^4.1.3" xmltodict = "^0.13.0" pypdf = "^3.17.4" backoff = "^2.2.1" From 891b5fba49ed1c48e9cb694c03e52e8099698f19 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Tue, 5 Mar 2024 20:43:19 +0100 Subject: [PATCH 14/72] refactor(acled.py): rename function --- backend-python/media_impact_monitor/__init__.py | 7 +------ .../media_impact_monitor/data_loaders/protest/acled.py | 2 +- .../data_loaders/protest/acled_test.py | 6 +++--- 3 files changed, 5 insertions(+), 10 deletions(-) diff --git a/backend-python/media_impact_monitor/__init__.py b/backend-python/media_impact_monitor/__init__.py index 07c23962..a4f0d5c5 100644 --- a/backend-python/media_impact_monitor/__init__.py +++ b/backend-python/media_impact_monitor/__init__.py @@ -1,10 +1,5 @@ -"""Main module for media_impact_monitor package. -Re-export important modules and functions. -""" +"""Main module for media_impact_monitor package.""" from beartype.claw import beartype_this_package - -from media_impact_monitor.util.paths import data, src - beartype_this_package() diff --git a/backend-python/media_impact_monitor/data_loaders/protest/acled.py b/backend-python/media_impact_monitor/data_loaders/protest/acled.py index 9216eb89..deed9e2f 100644 --- a/backend-python/media_impact_monitor/data_loaders/protest/acled.py +++ b/backend-python/media_impact_monitor/data_loaders/protest/acled.py @@ -31,7 +31,7 @@ @cloudcache @beartype -def get_protests( +def get_events( countries: list[str] = [], regions: list[str] = [], keyword: str | None = None ) -> pd.DataFrame: """Fetch protests from the ACLED API. diff --git a/backend-python/media_impact_monitor/data_loaders/protest/acled_test.py b/backend-python/media_impact_monitor/data_loaders/protest/acled_test.py index c7ba250a..e16b11b4 100644 --- a/backend-python/media_impact_monitor/data_loaders/protest/acled_test.py +++ b/backend-python/media_impact_monitor/data_loaders/protest/acled_test.py @@ -1,6 +1,6 @@ import os import pytest -from media_impact_monitor.data_loaders.protest.acled import get_protests +from media_impact_monitor.data_loaders.protest.acled import get_events def test_get_protests_with_keyword(): @@ -9,7 +9,7 @@ def test_get_protests_with_keyword(): assert ( "ACLED_EMAIL" in os.environ and "ACLED_KEY" in os.environ ), "Environment variables for ACLED API access are not set." - df = get_protests(countries=test_countries, keyword=test_keyword) + df = get_events(countries=test_countries, keyword=test_keyword) assert not df.empty, "The dataframe returned is unexpectedly empty." assert ( df["notes"].str.lower().str.contains(test_keyword.lower()).all() @@ -30,4 +30,4 @@ def test_get_protests_with_keyword(): def test_get_protests_fail_with_both_countries_and_regions(): """Test that the function raises an assertion error when both countries and regions are specified.""" with pytest.raises(AssertionError): - get_protests(countries=["United States"], regions=["Western Africa"]) + get_events(countries=["United States"], regions=["Western Africa"]) From ba73bef7b6a1d4cea63e01d8cc77306a3c32acd8 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Tue, 5 Mar 2024 21:01:23 +0100 Subject: [PATCH 15/72] feat(genios.py): add genios data loader --- .../data_loaders/news_print/genios.py | 31 +++++++++++++++++ .../data_loaders/news_print/genios_test.py | 33 +++++++++++++++++++ 2 files changed, 64 insertions(+) create mode 100644 backend-python/media_impact_monitor/data_loaders/news_print/genios.py create mode 100644 backend-python/media_impact_monitor/data_loaders/news_print/genios_test.py diff --git a/backend-python/media_impact_monitor/data_loaders/news_print/genios.py b/backend-python/media_impact_monitor/data_loaders/news_print/genios.py new file mode 100644 index 00000000..051d981c --- /dev/null +++ b/backend-python/media_impact_monitor/data_loaders/news_print/genios.py @@ -0,0 +1,31 @@ +from media_impact_monitor.util.cache import cloudcache, get +import pandas as pd +from beartype import beartype + + +@cloudcache +@beartype +def get_counts(query: str, start_date: pd.Timestamp, end_date: pd.Timestamp): + response = get( + "https://www.genios.de/api/searchResult/Alle/Presse", + params={ + "requestText": query, + "size": 0, + "sort": "BY_DATE", + "order": "desc", + "resultListType": "DEFAULT", + "date": [ + f"from_{start_date.strftime('%d.%m.%Y')}", + f"to_{end_date.strftime('%d.%m.%Y')}", + ], + "getDateHistograms": "day", + }, + ) + data = response.json()["aggregations"]["day"] + data = [{"date": k, "count": v["count"]} for k, v in data.items()] + df = pd.DataFrame(data) + df["date"] = pd.to_datetime(df["date"], format="%d-%m-%Y") + df = df.set_index("date") + # there is a bug that sets the count at day -1 to 0 + df = df[df.index >= start_date] + return df diff --git a/backend-python/media_impact_monitor/data_loaders/news_print/genios_test.py b/backend-python/media_impact_monitor/data_loaders/news_print/genios_test.py new file mode 100644 index 00000000..9206cb62 --- /dev/null +++ b/backend-python/media_impact_monitor/data_loaders/news_print/genios_test.py @@ -0,0 +1,33 @@ +from media_impact_monitor.data_loaders.news_print.genios import get_counts +import pandas as pd + + +def test_get_counts_genios(): + df = get_counts( + "Fridays for Future", + pd.Timestamp("2023-06-01"), + pd.Timestamp("2023-12-01"), + ) + assert not df.empty, "The dataframe returned is unexpectedly empty." + assert ( + df.index >= "2023-06-01" + ).all(), "The returned dataframe contains dates before the start date." + assert ( + df.index <= "2023-12-01" + ).all(), "The returned dataframe contains dates after the end date." + assert (df["count"] >= 0).all(), "The returned dataframe contains negative counts." + print(df["count"].diff().abs()) + assert ( + df["count"].diff().abs().fillna(0) <= 1000 + ).all(), "The returned dataframe contains a count change of more than 1000." + # assume more counts in September (due to global climate strike) than in August + assert ( + df.resample("ME").sum()["count"]["2023-09"].item() + > df.resample("ME").sum()["count"]["2023-08"].item() + ), "The count in September is not higher than in August." + assert ( + df.resample("ME").sum()["count"] < 10_000 + ).all(), "The count per month is higher than 10,000 for some months." + assert ( + df.resample("ME").sum()["count"] > 10 + ).all(), "The count per month is lower than 30 for some months." From 7d8a0c1b90be1b50b11ac1aa1d4b0690f66336e8 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Tue, 5 Mar 2024 21:02:11 +0100 Subject: [PATCH 16/72] refactor(mediacloud_.py): use pd.Timestamp rather than datetime.date ChatGPT says it's superior --- .../data_loaders/news_online/mediacloud_.py | 8 ++++---- .../data_loaders/news_online/mediacloud_test.py | 8 ++++---- 2 files changed, 8 insertions(+), 8 deletions(-) diff --git a/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_.py b/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_.py index 8f261adc..697a841d 100644 --- a/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_.py +++ b/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_.py @@ -25,8 +25,8 @@ @beartype def get_counts( query: str, - start_date: date = start, - end_date: date = end, + start_date: pd.Timestamp = start, + end_date: pd.Timestamp = end, countries: list | None = None, ): collection_ids: list[str] = [] @@ -40,8 +40,8 @@ def get_counts( collection_ids.append(results[0]["id"]) data = search.story_count_over_time( query=query, - start_date=start_date, - end_date=end_date, + start_date=start_date.to_pydatetime(), + end_date=end_date.to_pydatetime(), collection_ids=collection_ids, platform="wayback", ) diff --git a/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_test.py b/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_test.py index dbb633f0..01b99ba4 100644 --- a/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_test.py +++ b/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_test.py @@ -1,12 +1,12 @@ from media_impact_monitor.data_loaders.news_online.mediacloud_ import get_counts -from datetime import date +import pandas as pd -def test_get_counts(): +def test_get_counts_mediacloud(): df = get_counts( "Fridays for Future", - date(2023, 6, 1), - date(2023, 12, 1), + pd.Timestamp("2023-06-01"), + pd.Timestamp("2023-12-01"), ["Germany", "United Kingdom"], ) assert not df.empty, "The dataframe returned is unexpectedly empty." From c71d05ef0423fafac6dc28c8edec85fb2f1a0367 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Tue, 5 Mar 2024 21:03:58 +0100 Subject: [PATCH 17/72] fix(mediacloud_.py): use date rather than datetime --- .../data_loaders/news_online/mediacloud_.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_.py b/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_.py index 697a841d..2906f687 100644 --- a/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_.py +++ b/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_.py @@ -40,8 +40,8 @@ def get_counts( collection_ids.append(results[0]["id"]) data = search.story_count_over_time( query=query, - start_date=start_date.to_pydatetime(), - end_date=end_date.to_pydatetime(), + start_date=start_date.to_pydatetime().date(), + end_date=end_date.to_pydatetime().date(), collection_ids=collection_ids, platform="wayback", ) From d3e882f40cbd8dfdf64017b182032542468eda39 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Fri, 8 Mar 2024 13:04:07 +0100 Subject: [PATCH 18/72] Devcontainer: do not use Dockerfile --- .devcontainer/Dockerfile | 3 --- .devcontainer/devcontainer.json | 4 +--- 2 files changed, 1 insertion(+), 6 deletions(-) delete mode 100644 .devcontainer/Dockerfile diff --git a/.devcontainer/Dockerfile b/.devcontainer/Dockerfile deleted file mode 100644 index c3fe7fde..00000000 --- a/.devcontainer/Dockerfile +++ /dev/null @@ -1,3 +0,0 @@ -# having a separate Dockerfile is necessary for specifiying the platform -# R is only available for amd64, not for arm64 (Mac M1), see https://cran.r-project.org/bin/linux/ubuntu/fullREADME.html -FROM --platform=linux/amd64 mcr.microsoft.com/devcontainers/base:jammy diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json index f8bb81af..5dc55d16 100644 --- a/.devcontainer/devcontainer.json +++ b/.devcontainer/devcontainer.json @@ -3,9 +3,7 @@ { "name": "Ubuntu", // Or use a Dockerfile or Docker Compose file. More info: https://containers.dev/guide/dockerfile - "build": { - "dockerfile": "./Dockerfile" - }, + "image": "mcr.microsoft.com/devcontainers/base:jammy", "features": { "ghcr.io/devcontainers/features/azure-cli:1": {}, "ghcr.io/devcontainers/features/node:1": {}, From d22b2db6cc21f1e806ce9f12d40e1392609651a4 Mon Sep 17 00:00:00 2001 From: Lennart Klein <31488915+kleinlennart@users.noreply.github.com> Date: Fri, 8 Mar 2024 16:14:07 +0100 Subject: [PATCH 19/72] add baseline --- README.md | 28 +--------------------------- media-impact-monitor.Rproj | 17 ----------------- 2 files changed, 1 insertion(+), 44 deletions(-) delete mode 100644 media-impact-monitor.Rproj diff --git a/README.md b/README.md index b20234b5..e1378a8a 100644 --- a/README.md +++ b/README.md @@ -1,27 +1 @@ -# Media Impact Monitor - -The *Media Impact Monitor* will be a novel tool for protest groups and NGOs to measure and visualize their impact on public discourse. The tool will show how activist events affect the discourse across various media sources, such as local and national newspapers, social media, parliamentary debates, and more. Protest groups can use it to quantitatively and qualitatively evaluate their actions and adapt them in a targeted manner to draw attention to their issues. - -The *Media Impact Monitor* project is hosted by [Social Change Lab](http://socialchangelab.org/) and funded by [Prototype Fund](https://prototypefund.de/en/) ([BMBF](https://www.bmbf.de/bmbf/de/home/home_node.html)). Development will primarily take place from March–August 2024. - -## Motivation - -NGOs and protest groups often want to draw more public attention to important issues in order to initiate social change. To do this, they organise panel discussions, publish articles on social media, send out press releases, organize demonstrations, practice civil disobedience, implement art actions, and so on. To evaluate their work, organizations often use "press hits" as a metric - but this is a poor substitute for the broader impact on agenda setting within public discourse, which the organizations are interested in but cannot easily analyze. - -This impact on agenda setting is difficult to capture statistically because of the complex causal relationship between discourse, action events, and external events. A correlational and even a simple regression analysis would therefore lead to statistically biased results. - -This is where we will start with the Media Impact Monitor: It aims to use innovative causal inference methods to quantify and visualize how action events affect agenda setting in public discourse. - -**Examples:** The "Last Generation" can use it to see, for example, whether their actions distract from actual climate policy discussion or contribute to it constructively; and NGOs such as Greenpeace can evaluate which of their formats are most effective in media terms, and can use their media impact as an argument for donating to them. - -## Team -The project team is constituted from: -- **David Pomerenke** (@davidpomerenke) – Data Science – M.A. Artificial Intelligence -- **Lennard Klein** (@kleinlennart) – Data Science – B.A. Political Science -- **Lucas Vogel** (@vogelino) – Frontend UI/UX Development – B.A. Interface Design - -## Contact - -We are seeking activists and NGO employees to help us shape the tool: We are curious about your experience with media evaluation, your ideas and dreams, and your feedback on our prototypes! - -Please [send us an email](mailto:david@socialchangelab.org) or [book a short meeting](https://cal.com/davidpomerenke/meeting-mim) with us 🤗 +# Media Impact Monitor – Assets diff --git a/media-impact-monitor.Rproj b/media-impact-monitor.Rproj deleted file mode 100644 index c8daeb91..00000000 --- a/media-impact-monitor.Rproj +++ /dev/null @@ -1,17 +0,0 @@ -Version: 1.0 - -RestoreWorkspace: No -SaveWorkspace: No -AlwaysSaveHistory: Default - -EnableCodeIndexing: Yes -UseSpacesForTab: Yes -NumSpacesForTab: 2 -Encoding: UTF-8 - -RnwWeave: Sweave -LaTeX: pdfLaTeX - -AutoAppendNewline: Yes -StripTrailingWhitespace: Yes -LineEndingConversion: Posix From 596a4b19f7d93643ea8472cfd6c1bb81c964fb92 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Fri, 8 Mar 2024 19:24:18 +0000 Subject: [PATCH 20/72] refactor(backend-python): deactivate beartype It was raising unhelpful warnings/errors, we can deal with those at a later stage. --- backend-python/media_impact_monitor/__init__.py | 4 ---- .../data_loaders/news_online/mediacloud_.py | 5 +---- .../media_impact_monitor/data_loaders/news_print/genios.py | 4 +--- .../media_impact_monitor/data_loaders/protest/acled.py | 3 --- 4 files changed, 2 insertions(+), 14 deletions(-) diff --git a/backend-python/media_impact_monitor/__init__.py b/backend-python/media_impact_monitor/__init__.py index a4f0d5c5..cc7ddfa7 100644 --- a/backend-python/media_impact_monitor/__init__.py +++ b/backend-python/media_impact_monitor/__init__.py @@ -1,5 +1 @@ """Main module for media_impact_monitor package.""" - -from beartype.claw import beartype_this_package - -beartype_this_package() diff --git a/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_.py b/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_.py index 2906f687..f96e3588 100644 --- a/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_.py +++ b/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_.py @@ -5,9 +5,7 @@ import mediacloud.api import pandas as pd from dotenv import load_dotenv -from beartype import beartype - -from media_impact_monitor.util.cache import cloudcache, get +from media_impact_monitor.util.cache import cloudcache load_dotenv() @@ -22,7 +20,6 @@ @cloudcache -@beartype def get_counts( query: str, start_date: pd.Timestamp = start, diff --git a/backend-python/media_impact_monitor/data_loaders/news_print/genios.py b/backend-python/media_impact_monitor/data_loaders/news_print/genios.py index 051d981c..ff817893 100644 --- a/backend-python/media_impact_monitor/data_loaders/news_print/genios.py +++ b/backend-python/media_impact_monitor/data_loaders/news_print/genios.py @@ -1,10 +1,8 @@ -from media_impact_monitor.util.cache import cloudcache, get import pandas as pd -from beartype import beartype +from media_impact_monitor.util.cache import cloudcache, get @cloudcache -@beartype def get_counts(query: str, start_date: pd.Timestamp, end_date: pd.Timestamp): response = get( "https://www.genios.de/api/searchResult/Alle/Presse", diff --git a/backend-python/media_impact_monitor/data_loaders/protest/acled.py b/backend-python/media_impact_monitor/data_loaders/protest/acled.py index deed9e2f..08d7ce66 100644 --- a/backend-python/media_impact_monitor/data_loaders/protest/acled.py +++ b/backend-python/media_impact_monitor/data_loaders/protest/acled.py @@ -2,9 +2,7 @@ import pandas as pd from dotenv import load_dotenv - from media_impact_monitor.util.cache import cloudcache, get -from beartype import beartype load_dotenv() @@ -30,7 +28,6 @@ @cloudcache -@beartype def get_events( countries: list[str] = [], regions: list[str] = [], keyword: str | None = None ) -> pd.DataFrame: From 1eebcc57a90c3131e63401851d62accc8cf8c015 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Fri, 8 Mar 2024 19:24:58 +0000 Subject: [PATCH 21/72] style(backend-python): format using ruff --- .../data_loaders/news_online/mediacloud_test.py | 2 +- .../media_impact_monitor/data_loaders/news_print/genios_test.py | 2 +- .../media_impact_monitor/data_loaders/protest/acled_test.py | 1 + backend-python/media_impact_monitor/util/cache.py | 2 -- backend-python/media_impact_monitor/util/cache_test.py | 2 +- 5 files changed, 4 insertions(+), 5 deletions(-) diff --git a/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_test.py b/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_test.py index 01b99ba4..82c3bd85 100644 --- a/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_test.py +++ b/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_test.py @@ -1,5 +1,5 @@ -from media_impact_monitor.data_loaders.news_online.mediacloud_ import get_counts import pandas as pd +from media_impact_monitor.data_loaders.news_online.mediacloud_ import get_counts def test_get_counts_mediacloud(): diff --git a/backend-python/media_impact_monitor/data_loaders/news_print/genios_test.py b/backend-python/media_impact_monitor/data_loaders/news_print/genios_test.py index 9206cb62..3c68e859 100644 --- a/backend-python/media_impact_monitor/data_loaders/news_print/genios_test.py +++ b/backend-python/media_impact_monitor/data_loaders/news_print/genios_test.py @@ -1,5 +1,5 @@ -from media_impact_monitor.data_loaders.news_print.genios import get_counts import pandas as pd +from media_impact_monitor.data_loaders.news_print.genios import get_counts def test_get_counts_genios(): diff --git a/backend-python/media_impact_monitor/data_loaders/protest/acled_test.py b/backend-python/media_impact_monitor/data_loaders/protest/acled_test.py index e16b11b4..db9e51a6 100644 --- a/backend-python/media_impact_monitor/data_loaders/protest/acled_test.py +++ b/backend-python/media_impact_monitor/data_loaders/protest/acled_test.py @@ -1,4 +1,5 @@ import os + import pytest from media_impact_monitor.data_loaders.protest.acled import get_events diff --git a/backend-python/media_impact_monitor/util/cache.py b/backend-python/media_impact_monitor/util/cache.py index 833a822b..028c68ea 100644 --- a/backend-python/media_impact_monitor/util/cache.py +++ b/backend-python/media_impact_monitor/util/cache.py @@ -10,8 +10,6 @@ from requests import post as _post from zenrows import ZenRowsClient -from media_impact_monitor.util.paths import src, data - load_dotenv() storage = GoogleCloudStorage("/media-impact-monitor/cache") diff --git a/backend-python/media_impact_monitor/util/cache_test.py b/backend-python/media_impact_monitor/util/cache_test.py index f2a524a6..9c8348ca 100644 --- a/backend-python/media_impact_monitor/util/cache_test.py +++ b/backend-python/media_impact_monitor/util/cache_test.py @@ -1,4 +1,4 @@ -from media_impact_monitor.util.cache import get, post, get_proxied +from media_impact_monitor.util.cache import get, get_proxied, post # URLs for the stable testing endpoints (preferably dedicated for testing purposes) GET_URL = "https://httpbin.org/get" From 89d30d795329ed24e2aeaeeea25177d89fd70ae3 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Fri, 8 Mar 2024 19:25:26 +0000 Subject: [PATCH 22/72] refactor(acled.py): rename output columns --- .../media_impact_monitor/data_loaders/protest/acled.py | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/backend-python/media_impact_monitor/data_loaders/protest/acled.py b/backend-python/media_impact_monitor/data_loaders/protest/acled.py index 08d7ce66..d570fd56 100644 --- a/backend-python/media_impact_monitor/data_loaders/protest/acled.py +++ b/backend-python/media_impact_monitor/data_loaders/protest/acled.py @@ -64,5 +64,11 @@ def get_events( df["assoc_actor_1"].str.lower().str.contains(keyword.lower()) | df["notes"].str.lower().str.contains(keyword.lower()) ] - df = df.rename(columns={"event_date": "date"}) + df = df.rename( + columns={ + "event_date": "date", + "assoc_actor_1": "organization", + "notes": "description", + } + ) return df From 228394b2ccc731285b0c00361d703b61256b503e Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Fri, 8 Mar 2024 19:25:56 +0000 Subject: [PATCH 23/72] feat(api.py): setup very basic API --- backend-python/media_impact_monitor/api.py | 69 ++++ backend-python/media_impact_monitor/types_.py | 33 ++ backend-python/poetry.lock | 342 +++++++++++++++++- backend-python/pyproject.toml | 2 + 4 files changed, 444 insertions(+), 2 deletions(-) create mode 100644 backend-python/media_impact_monitor/api.py create mode 100644 backend-python/media_impact_monitor/types_.py diff --git a/backend-python/media_impact_monitor/api.py b/backend-python/media_impact_monitor/api.py new file mode 100644 index 00000000..acdd87ef --- /dev/null +++ b/backend-python/media_impact_monitor/api.py @@ -0,0 +1,69 @@ +"""API for the Media Impact Monitor. + +Run with: `uvicorn media_impact_monitor.api:app --reload` +Or, if necessary: `poetry run uvicorn media_impact_monitor.api:app --reload` +""" + +from functools import partial + +import pandas as pd +from fastapi import FastAPI +from fastapi.responses import PlainTextResponse +from typing_extensions import Literal + +from media_impact_monitor.data_loaders.news_online.mediacloud_ import ( + get_counts as get_counts_news_online, +) +from media_impact_monitor.data_loaders.news_print.genios import ( + get_counts as get_counts_news_print, +) +from media_impact_monitor.data_loaders.protest.acled import ( + get_events as get_protests, +) +from media_impact_monitor.types_ import CountJson, CountType, EventJson + +app = FastAPI() + + +@app.get("/", response_class=PlainTextResponse) +def welcome() -> str: + version = "0.1.0" + return f"Media Impact Monitor API, v{version}\nDocumentation: /docs" + + +parse_date = partial(pd.to_datetime, format="%Y-%m-%d") + + +@app.get("/events/") +def get_events( + types: list[Literal["protest"]], + keywords: list[str], + organizations: list[str], + start_date: str, + end_date: str, +) -> list[EventJson]: + """Fetch events from the Media Impact Monitor database.""" + events = get_protests() + start_date = parse_date(start_date) + end_date = parse_date(end_date) + # ... TODO + return events.to_dict(orient="records")[:50] + + +@app.get("/counts/") +def get_counts( + types: list[CountType], + keywords: list[str], + start_date: str, + end_date: str, +) -> dict[CountType, list[CountJson]]: + """Fetch media item counts from the Media Impact Monitor database.""" + start_date = parse_date(start_date) + end_date = parse_date(end_date) + results = {} + if "news_online" in types: + results["news_online"] = get_counts_news_online().to_dict(orient="records")[:50] + if "news_print" in types: + results["news_print"] = get_counts_news_print().to_dict(orient="records")[:50] + # ... TODO + return results diff --git a/backend-python/media_impact_monitor/types_.py b/backend-python/media_impact_monitor/types_.py new file mode 100644 index 00000000..64871e7e --- /dev/null +++ b/backend-python/media_impact_monitor/types_.py @@ -0,0 +1,33 @@ +from dataclasses import dataclass +from typing import Literal + +import pandas as pd + + +@dataclass +class Event: + date: pd.Timestamp + organization: str + description: str + + +@dataclass +class EventJson: + date: str + organization: str + description: str + + +@dataclass +class Count: + date: pd.Timestamp + count: int + + +@dataclass +class CountJson: + date: str + count: int + + +CountType = Literal["news_online", "news_print"] diff --git a/backend-python/poetry.lock b/backend-python/poetry.lock index 6e8bae64..24c99344 100644 --- a/backend-python/poetry.lock +++ b/backend-python/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.7.0 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. 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"a05e79ac101a82d7de7845a579e3bdfffeaebef09499403b0ea894dc79141be8" +content-hash = "9688025de784f066db07a3e858dfbf41b253f6cfc29f46ea39b0a7f86ae4f7db" diff --git a/backend-python/pyproject.toml b/backend-python/pyproject.toml index 1ae6b5b3..bdba259a 100644 --- a/backend-python/pyproject.toml +++ b/backend-python/pyproject.toml @@ -26,6 +26,8 @@ openpyxl = "^3.1.2" perscache = "^0.6.1" gcsfs = "^2024.2.0" beartype = "^0.17.2" +fastapi = "^0.110.0" +uvicorn = {extras = ["standard"], version = "^0.27.1"} [tool.poetry.group.dev.dependencies] pytest = "^8.0.2" From da9baa5777b61f72fe3a84b79048016ae2161a19 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Fri, 8 Mar 2024 20:07:37 +0000 Subject: [PATCH 24/72] feat(Dockerfile): add Dockerfile for production --- .devcontainer/devcontainer.json | 33 ++++++++------------------------- Dockerfile | 17 +++++++++++++++++ 2 files changed, 25 insertions(+), 25 deletions(-) create mode 100644 Dockerfile diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json index 5dc55d16..e6bfe1aa 100644 --- a/.devcontainer/devcontainer.json +++ b/.devcontainer/devcontainer.json @@ -7,30 +7,11 @@ "features": { "ghcr.io/devcontainers/features/azure-cli:1": {}, "ghcr.io/devcontainers/features/node:1": {}, - "ghcr.io/devcontainers/features/python:1": { - "installTools": true, - "version": "3.10" - }, - "ghcr.io/rocker-org/devcontainer-features/quarto-cli:1": { - "installTinyTex": false, // not supported, must be installed manually - "installChromium": true - }, - "ghcr.io/rocker-org/devcontainer-features/r-apt:0": { - "installDevTools": true, - "installVscDebugger": true, - "useTesting": true, - "vscodeRSupport": "minimal" - }, - "ghcr.io/rocker-org/devcontainer-features/r-packages:1": { - "packages": [ - // "easystats" - ], - "installSystemRequirements": true - }, - "ghcr.io/rocker-org/devcontainer-features/rstudio-server:0": { - "singleUser": true, - "version": "stable" - }, + "ghcr.io/devcontainers/features/python:1": {}, + "ghcr.io/rocker-org/devcontainer-features/quarto-cli:1": {}, + "ghcr.io/rocker-org/devcontainer-features/r-apt:0": {}, + "ghcr.io/rocker-org/devcontainer-features/r-packages:1": {}, + "ghcr.io/rocker-org/devcontainer-features/rstudio-server:0": {}, "ghcr.io/devcontainers-contrib/features/poetry:2": {}, "ghcr.io/devcontainers-contrib/features/ruff:1": {}, "ghcr.io/devcontainers-contrib/features/starship:1": {}, @@ -39,7 +20,8 @@ "ghcr.io/joshuanianji/devcontainer-features/gcloud-cli-persistence:1": {}, "ghcr.io/nikobockerman/devcontainer-features/poetry-persistent-cache:1": {}, "ghcr.io/rocker-org/devcontainer-features/r-history:0": {}, - "ghcr.io/stuartleeks/dev-container-features/shell-history:0": {} + "ghcr.io/stuartleeks/dev-container-features/shell-history:0": {}, + "ghcr.io/devcontainers/features/docker-in-docker:2": {} }, // Ports & Server ---------------------------------------------------------------------------- // start RStudio Server process in container @@ -71,6 +53,7 @@ // General "eamodio.gitlens", "mhutchie.git-graph", + "knisterpeter.vscode-commitizen", "ms-vscode-remote.vscode-remote-extensionpack", "ms-vsliveshare.vsliveshare", "github.copilot", diff --git a/Dockerfile b/Dockerfile new file mode 100644 index 00000000..51a3aed1 --- /dev/null +++ b/Dockerfile @@ -0,0 +1,17 @@ +# build it: docker build -t mim . +# run it: docker run -e MEDIACLOUD_API_TOKEN="${MEDIACLOUD_API_TOKEN}" -e ACLED_EMAIL="${ACLED_EMAIL}" -e ACLED_KEY="${ACLED_KEY}" mim +FROM python:3.10-slim +# install poetry +RUN pip install --upgrade pip +RUN pip install poetry +# copy the poetry files and install the dependencies +COPY backend-python/poetry.lock backend-python/pyproject.toml /app/backend-python/ +WORKDIR /app/backend-python +RUN poetry config virtualenvs.create false \ + && poetry install --no-interaction --no-ansi +# copy the rest of the files and set the working directory +WORKDIR /app/ +COPY . /app/ +WORKDIR /app/backend-python +# run the application +CMD ["uvicorn", "media_impact_monitor.api:app", "--host", "0.0.0.0", "--port", "80"] From 2135ccb0c0ad698eb896f3e98127e6e3ea635f26 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Fri, 8 Mar 2024 23:11:52 +0000 Subject: [PATCH 25/72] refactor(backend-python): change function names, fix issues with tests --- backend-python/media_impact_monitor/api.py | 24 +++++++++++-------- .../data_loaders/news_online/mediacloud_.py | 3 +-- .../news_online/mediacloud_test.py | 6 +++-- .../data_loaders/news_print/genios.py | 2 +- .../data_loaders/news_print/genios_test.py | 4 ++-- .../data_loaders/protest/acled.py | 2 +- .../data_loaders/protest/acled_test.py | 20 ++++++++-------- 7 files changed, 33 insertions(+), 28 deletions(-) diff --git a/backend-python/media_impact_monitor/api.py b/backend-python/media_impact_monitor/api.py index acdd87ef..192c0fe3 100644 --- a/backend-python/media_impact_monitor/api.py +++ b/backend-python/media_impact_monitor/api.py @@ -12,14 +12,10 @@ from typing_extensions import Literal from media_impact_monitor.data_loaders.news_online.mediacloud_ import ( - get_counts as get_counts_news_online, -) -from media_impact_monitor.data_loaders.news_print.genios import ( - get_counts as get_counts_news_print, -) -from media_impact_monitor.data_loaders.protest.acled import ( - get_events as get_protests, + get_mediacloud_counts, ) +from media_impact_monitor.data_loaders.news_print.genios import get_genios_counts +from media_impact_monitor.data_loaders.protest.acled import get_acled_events from media_impact_monitor.types_ import CountJson, CountType, EventJson app = FastAPI() @@ -43,7 +39,7 @@ def get_events( end_date: str, ) -> list[EventJson]: """Fetch events from the Media Impact Monitor database.""" - events = get_protests() + events = get_acled_events(keyword=keywords[0]) start_date = parse_date(start_date) end_date = parse_date(end_date) # ... TODO @@ -62,8 +58,16 @@ def get_counts( end_date = parse_date(end_date) results = {} if "news_online" in types: - results["news_online"] = get_counts_news_online().to_dict(orient="records")[:50] + results["news_online"] = get_mediacloud_counts( + query=keywords[0], + start_date=start_date, + end_date=end_date, + ).to_dict(orient="records")[:50] if "news_print" in types: - results["news_print"] = get_counts_news_print().to_dict(orient="records")[:50] + results["news_print"] = get_genios_counts( + query=keywords[0], + start_date=start_date, + end_date=end_date, + ).to_dict(orient="records")[:50] # ... TODO return results diff --git a/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_.py b/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_.py index f96e3588..d92326b7 100644 --- a/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_.py +++ b/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_.py @@ -20,7 +20,7 @@ @cloudcache -def get_counts( +def get_mediacloud_counts( query: str, start_date: pd.Timestamp = start, end_date: pd.Timestamp = end, @@ -40,7 +40,6 @@ def get_counts( start_date=start_date.to_pydatetime().date(), end_date=end_date.to_pydatetime().date(), collection_ids=collection_ids, - platform="wayback", ) df = pd.DataFrame(data) df["date"] = pd.to_datetime(df["date"]) diff --git a/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_test.py b/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_test.py index 82c3bd85..7ba04e41 100644 --- a/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_test.py +++ b/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_test.py @@ -1,9 +1,11 @@ import pandas as pd -from media_impact_monitor.data_loaders.news_online.mediacloud_ import get_counts +from media_impact_monitor.data_loaders.news_online.mediacloud_ import ( + get_mediacloud_counts, +) def test_get_counts_mediacloud(): - df = get_counts( + df = get_mediacloud_counts( "Fridays for Future", pd.Timestamp("2023-06-01"), pd.Timestamp("2023-12-01"), diff --git a/backend-python/media_impact_monitor/data_loaders/news_print/genios.py b/backend-python/media_impact_monitor/data_loaders/news_print/genios.py index ff817893..c14774ec 100644 --- a/backend-python/media_impact_monitor/data_loaders/news_print/genios.py +++ b/backend-python/media_impact_monitor/data_loaders/news_print/genios.py @@ -3,7 +3,7 @@ @cloudcache -def get_counts(query: str, start_date: pd.Timestamp, end_date: pd.Timestamp): +def get_genios_counts(query: str, start_date: pd.Timestamp, end_date: pd.Timestamp): response = get( "https://www.genios.de/api/searchResult/Alle/Presse", params={ diff --git a/backend-python/media_impact_monitor/data_loaders/news_print/genios_test.py b/backend-python/media_impact_monitor/data_loaders/news_print/genios_test.py index 3c68e859..077a2f75 100644 --- a/backend-python/media_impact_monitor/data_loaders/news_print/genios_test.py +++ b/backend-python/media_impact_monitor/data_loaders/news_print/genios_test.py @@ -1,9 +1,9 @@ import pandas as pd -from media_impact_monitor.data_loaders.news_print.genios import get_counts +from media_impact_monitor.data_loaders.news_print.genios import get_genios_counts def test_get_counts_genios(): - df = get_counts( + df = get_genios_counts( "Fridays for Future", pd.Timestamp("2023-06-01"), pd.Timestamp("2023-12-01"), diff --git a/backend-python/media_impact_monitor/data_loaders/protest/acled.py b/backend-python/media_impact_monitor/data_loaders/protest/acled.py index d570fd56..a953e22f 100644 --- a/backend-python/media_impact_monitor/data_loaders/protest/acled.py +++ b/backend-python/media_impact_monitor/data_loaders/protest/acled.py @@ -28,7 +28,7 @@ @cloudcache -def get_events( +def get_acled_events( countries: list[str] = [], regions: list[str] = [], keyword: str | None = None ) -> pd.DataFrame: """Fetch protests from the ACLED API. diff --git a/backend-python/media_impact_monitor/data_loaders/protest/acled_test.py b/backend-python/media_impact_monitor/data_loaders/protest/acled_test.py index db9e51a6..3665d4ac 100644 --- a/backend-python/media_impact_monitor/data_loaders/protest/acled_test.py +++ b/backend-python/media_impact_monitor/data_loaders/protest/acled_test.py @@ -1,7 +1,7 @@ import os import pytest -from media_impact_monitor.data_loaders.protest.acled import get_events +from media_impact_monitor.data_loaders.protest.acled import get_acled_events def test_get_protests_with_keyword(): @@ -10,25 +10,25 @@ def test_get_protests_with_keyword(): assert ( "ACLED_EMAIL" in os.environ and "ACLED_KEY" in os.environ ), "Environment variables for ACLED API access are not set." - df = get_events(countries=test_countries, keyword=test_keyword) + df = get_acled_events(countries=test_countries, keyword=test_keyword) assert not df.empty, "The dataframe returned is unexpectedly empty." assert ( - df["notes"].str.lower().str.contains(test_keyword.lower()).all() - ), "Keyword not found in the notes." - expected_columns = ["date", "assoc_actor_1", "notes"] + df["description"].str.lower().str.contains(test_keyword.lower()).all() + ), "Keyword not found in the description." + expected_columns = ["date", "organization", "description"] assert all( column in df.columns for column in expected_columns ), "Not all expected columns are present in the returned DataFrame." movements = ["Fridays for Future", "Extinction Rebellion"] assert ( - df["assoc_actor_1"].str.contains(movements[0]).sum() > 10 - ), "Fridays for Future not found in the assoc_actor_1 column." + df["organization"].str.contains(movements[0]).sum() > 10 + ), "Fridays for Future not found in the organization column." assert ( - df["assoc_actor_1"].str.contains(movements[1]).sum() > 10 - ), "Extinction Rebellion not found in the assoc_actor_1 column." + df["organization"].str.contains(movements[1]).sum() > 10 + ), "Extinction Rebellion not found in the organization column." def test_get_protests_fail_with_both_countries_and_regions(): """Test that the function raises an assertion error when both countries and regions are specified.""" with pytest.raises(AssertionError): - get_events(countries=["United States"], regions=["Western Africa"]) + get_acled_events(countries=["United States"], regions=["Western Africa"]) From 14d20aa9b7a93757b09d3d65715267bca4a21f93 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Fri, 8 Mar 2024 23:12:30 +0000 Subject: [PATCH 26/72] build(pyproject.toml): remove beartype --- backend-python/poetry.lock | 2 +- backend-python/pyproject.toml | 4 ---- 2 files changed, 1 insertion(+), 5 deletions(-) diff --git a/backend-python/poetry.lock b/backend-python/poetry.lock index 24c99344..7a8e362a 100644 --- a/backend-python/poetry.lock +++ b/backend-python/poetry.lock @@ -4299,4 +4299,4 @@ requests = "*" [metadata] lock-version = "2.0" python-versions = "^3.10" -content-hash = "9688025de784f066db07a3e858dfbf41b253f6cfc29f46ea39b0a7f86ae4f7db" +content-hash = "bd73d501fba693e17aa1fde7c2f10a2604de0d03f1f8589fbecf697015c62390" diff --git a/backend-python/pyproject.toml b/backend-python/pyproject.toml index bdba259a..ede811b1 100644 --- a/backend-python/pyproject.toml +++ b/backend-python/pyproject.toml @@ -25,16 +25,12 @@ cloudpathlib = {extras = ["gs"], version = "^0.17.0"} openpyxl = "^3.1.2" perscache = "^0.6.1" gcsfs = "^2024.2.0" -beartype = "^0.17.2" fastapi = "^0.110.0" uvicorn = {extras = ["standard"], version = "^0.27.1"} [tool.poetry.group.dev.dependencies] pytest = "^8.0.2" -[tool.pytest.ini_options] -filterwarnings = "ignore::beartype.roar.BeartypeClawDecorWarning" - [build-system] requires = ["poetry-core"] build-backend = "poetry.core.masonry.api" From fb02209d26cfb96950568af7538db5b872c8c54c Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Fri, 8 Mar 2024 23:14:05 +0000 Subject: [PATCH 27/72] feat(deploy.yml): add github action to test, build, push --- .devcontainer/devcontainer.json | 4 ++- .github/workflows/deploy.yml | 56 +++++++++++++++++++++++++++++++++ .gitignore | 2 ++ 3 files changed, 61 insertions(+), 1 deletion(-) create mode 100644 .github/workflows/deploy.yml diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json index e6bfe1aa..a9463bc0 100644 --- a/.devcontainer/devcontainer.json +++ b/.devcontainer/devcontainer.json @@ -21,7 +21,8 @@ "ghcr.io/nikobockerman/devcontainer-features/poetry-persistent-cache:1": {}, "ghcr.io/rocker-org/devcontainer-features/r-history:0": {}, "ghcr.io/stuartleeks/dev-container-features/shell-history:0": {}, - "ghcr.io/devcontainers/features/docker-in-docker:2": {} + "ghcr.io/devcontainers/features/docker-in-docker:2": {}, + "ghcr.io/devcontainers-contrib/features/act:1": {} }, // Ports & Server ---------------------------------------------------------------------------- // start RStudio Server process in container @@ -54,6 +55,7 @@ "eamodio.gitlens", "mhutchie.git-graph", "knisterpeter.vscode-commitizen", + "github.vscode-github-actions", "ms-vscode-remote.vscode-remote-extensionpack", "ms-vsliveshare.vsliveshare", "github.copilot", diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml new file mode 100644 index 00000000..ad488839 --- /dev/null +++ b/.github/workflows/deploy.yml @@ -0,0 +1,56 @@ +name: CI/CD Pipeline +# run it locally: act --secret-file .secrets --env-file .env + +on: + push: + branches: + - main + +jobs: + test: + runs-on: ubuntu-22.04 + steps: + + - name: Checkout code + uses: actions/checkout@v4 + + - name: Set up Python + uses: actions/setup-python@v2 + with: + python-version: '3.10' + + - name: Install Poetry + run: | + pip install poetry + + - name: Install dependencies + run: | + cd backend-python + poetry install + + - name: Run pytest + run: | + cd backend-python + poetry run pytest -k "not mediacloud and not proxied" # TODO: un-skip tests + + build-and-push: + needs: test + runs-on: ubuntu-22.04 + steps: + + - name: Checkout code + uses: actions/checkout@v4 + + - name: Login to Docker Registry + uses: docker/login-action@v3 + with: + username: ${{ secrets.DOCKER_USERNAME }} + password: ${{ secrets.DOCKER_PASSWORD }} + + - name: Build Docker image + run: docker build -t socialchangelab/media-impact-monitor:${{ github.sha }} . + + - name: Push Docker image + run: docker push socialchangelab/media-impact-monitor:${{ github.sha }} + + diff --git a/.gitignore b/.gitignore index 6f98794f..43f7f69a 100644 --- a/.gitignore +++ b/.gitignore @@ -1,3 +1,5 @@ +.secrets + ### macOS ------------------------------------------------------------------------ # General .DS_Store From 8e84712894479a4576ba246d252697c5c8b4799a Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Sat, 9 Mar 2024 08:08:46 +0000 Subject: [PATCH 28/72] docs(Dockerfile): add some optional labels --- Dockerfile | 8 ++++++++ 1 file changed, 8 insertions(+) diff --git a/Dockerfile b/Dockerfile index 51a3aed1..7b8439bf 100644 --- a/Dockerfile +++ b/Dockerfile @@ -15,3 +15,11 @@ COPY . /app/ WORKDIR /app/backend-python # run the application CMD ["uvicorn", "media_impact_monitor.api:app", "--host", "0.0.0.0", "--port", "80"] +# OCI Labels as per https://github.com/opencontainers/image-spec/blob/main/annotations.md +LABEL org.opencontainers.image.title="media-impact-monitor" +LABEL org.opencontainers.image.description="Media Impact Monitor" +LABEL org.opencontainers.image.authors="Social Change Lab" +LABEL org.opencontainers.image.url="https://hub.docker.com/repository/docker/socialchangelab/media-impact-monitor" +LABEL org.opencontainers.image.source="https://github.com/SocialChangeLab/media-impact-monitor" +LABEL org.opencontainers.image.created=${BUILD_DATE} +LABEL org.opencontainers.image.revision=${VCS_REF} From 862fb09ec63b645e1c4245787e79915b101eb489 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Sat, 9 Mar 2024 08:09:23 +0000 Subject: [PATCH 29/72] ci(devcontainer.json): install terraform in devcontainer --- .devcontainer/devcontainer.json | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json index a9463bc0..b82bc0bf 100644 --- a/.devcontainer/devcontainer.json +++ b/.devcontainer/devcontainer.json @@ -22,7 +22,8 @@ "ghcr.io/rocker-org/devcontainer-features/r-history:0": {}, "ghcr.io/stuartleeks/dev-container-features/shell-history:0": {}, "ghcr.io/devcontainers/features/docker-in-docker:2": {}, - "ghcr.io/devcontainers-contrib/features/act:1": {} + "ghcr.io/devcontainers-contrib/features/act:1": {}, + "ghcr.io/devcontainers/features/terraform:1": {} }, // Ports & Server ---------------------------------------------------------------------------- // start RStudio Server process in container @@ -61,6 +62,7 @@ "github.copilot", "github.copilot-chat", "visualstudioexptteam.vscodeintellicode", + "hashicorp.terraform", // R "quarto.quarto", "REditorSupport.r", From 4fedcec218d4fc1bdfb9c11f0df724e926b43218 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Sat, 9 Mar 2024 08:09:58 +0000 Subject: [PATCH 30/72] ci(main.tf): set up terraform to run the container on Azure --- .gitignore | 36 +++++++++++++++++++++++++++++++ .terraform.lock.hcl | 21 ++++++++++++++++++ main.tf | 52 +++++++++++++++++++++++++++++++++++++++++++++ 3 files changed, 109 insertions(+) create mode 100644 .terraform.lock.hcl create mode 100644 main.tf diff --git a/.gitignore b/.gitignore index 43f7f69a..a4d5ebd6 100644 --- a/.gitignore +++ b/.gitignore @@ -1,4 +1,5 @@ .secrets +.azure ### macOS ------------------------------------------------------------------------ # General @@ -301,3 +302,38 @@ rsconnect/ # End of https://www.toptal.com/developers/gitignore/api/r .quarto + +# Local .terraform directories +**/.terraform/* + +# .tfstate files +*.tfstate +*.tfstate.* + +# Crash log files +crash.log +crash.*.log + +# Exclude all .tfvars files, which are likely to contain sensitive data, such as +# password, private keys, and other secrets. These should not be part of version +# control as they are data points which are potentially sensitive and subject +# to change depending on the environment. +*.tfvars +*.tfvars.json + +# Ignore override files as they are usually used to override resources locally and so +# are not checked in +override.tf +override.tf.json +*_override.tf +*_override.tf.json + +# Include override files you do wish to add to version control using negated pattern +# !example_override.tf + +# Include tfplan files to ignore the plan output of command: terraform plan -out=tfplan +# example: *tfplan* + +# Ignore CLI configuration files +.terraformrc +terraform.rc diff --git a/.terraform.lock.hcl b/.terraform.lock.hcl new file mode 100644 index 00000000..bd57ec6e --- /dev/null +++ b/.terraform.lock.hcl @@ -0,0 +1,21 @@ +# This file is maintained automatically by "terraform init". +# Manual edits may be lost in future updates. + +provider "registry.terraform.io/hashicorp/azurerm" { + version = "3.95.0" + hashes = [ + "h1:Vcd25+tCcLuRyEVaG9w/eHcSJcFI3oH/T5gwGuCHe74=", + "zh:36e96725fb5860b68c4f86d43988eadfe13ece7abfc3368bf01b2f4e253a05f8", + "zh:3f416b574518a63793dfda0efa588dd0d2432d4cbea5908d7a479f82f0a89a01", + "zh:3f94eb8dc1717bd5af524138258b65bb2011917e05db727a0696623d4a2cdf6f", + "zh:4fd395656aeb366830eebc11f10d29b2e9652b4d74e70bbe785768b7cbcf8d5c", + "zh:58bc5bd83a984f91faebbc71f27062d3a6ca4e3abfc2fe7fcd40833d8145c5a8", + "zh:5bfedb1592056da89c3cfa2cb409cdeadedc2d336a862d39c14a9a2a4424cb8a", + "zh:6135572aa2d99e95877a28deaa864742429ba7bba8ca39b5dd8261484d384c06", + "zh:8440dbc750cd06e51a640175acd2187ab2816e080c318ea278ef9657c3000675", + "zh:9dc9e301319f49c639535da6d5ed5d938a7c8153d4467816419466d343784d01", + "zh:e5c99bc6c960d0cc4f4aab4779ccb59ec8cc6802799f2fff9c41c945f2012f85", + "zh:e9d55f63a20054c3cbb95f14dc3670c89575893b9747eb2c2ee067e1bc521c48", + "zh:f569b65999264a9416862bca5cd2a6177d94ccb0424f3a4ef424428912b9cb3c", + ] +} diff --git a/main.tf b/main.tf new file mode 100644 index 00000000..f92f2128 --- /dev/null +++ b/main.tf @@ -0,0 +1,52 @@ +provider "azurerm" { + features {} +} + +resource "azurerm_resource_group" "rg" { + name = "rg-terraform" + location = "Germany West Central" +} + +variable "MEDIACLOUD_API_TOKEN" { + type = string + description = "The API token for the Media Cloud API" +} + +variable "ACLED_EMAIL" { + type = string + description = "The email for the ACLED API" +} + +variable "ACLED_KEY" { + type = string + description = "The API token for the ACLED API" +} + +resource "azurerm_container_group" "media_impact_monitor" { + name = "media-impact-monitor" + location = azurerm_resource_group.rg.location + resource_group_name = azurerm_resource_group.rg.name + os_type = "Linux" + + container { + name = "media-impact-monitor" + image = "socialchangelab/media-impact-monitor:latest" + cpu = "0.5" + memory = "1.5" + + ports { + port = 80 + protocol = "TCP" + } + + environment_variables = { + "MEDIACLOUD_API_TOKEN" = "your-api" + } + } + + ip_address_type = "Public" +} + +output "media_impact_monitor_ip" { + value = azurerm_container_group.media_impact_monitor.ip_address +} From 018f6eb580a681f87e82970fd91c1748d274a661 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Sat, 9 Mar 2024 09:46:47 +0000 Subject: [PATCH 31/72] ci(deploy.yml): test Github actions --- .github/workflows/deploy.yml | 27 +++++++++++++++++++++++++-- 1 file changed, 25 insertions(+), 2 deletions(-) diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index ad488839..fa130961 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -48,9 +48,32 @@ jobs: password: ${{ secrets.DOCKER_PASSWORD }} - name: Build Docker image - run: docker build -t socialchangelab/media-impact-monitor:${{ github.sha }} . + run: | + docker build \ + -t socialchangelab/media-impact-monitor:${{ github.sha }} \ + -t socialchangelab/media-impact-monitor:latest \ + . - name: Push Docker image - run: docker push socialchangelab/media-impact-monitor:${{ github.sha }} + run: docker push --all-tags socialchangelab/media-impact-monitor + deploy: + needs: build-and-push + runs-on: ubuntu-22.04 + steps: + + - name: Checkout code + uses: actions/checkout@v4 + + - name: Setup Azure CLI + uses: azure/login@v2 + with: + creds: ${{ secrets.AZURE_CREDENTIALS }} + + - name: Azure CLI script + uses: azure/CLI@v1 + with: + azcliversion: latest + inlineScript: | + az account show From 1b3d38aeaf9456880faa908732fbe7ff4ab39370 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Sat, 9 Mar 2024 09:47:53 +0000 Subject: [PATCH 32/72] ci(deploy.yml): also run Github Action for this branch --- .github/workflows/deploy.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index fa130961..56339433 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -5,6 +5,7 @@ on: push: branches: - main + - feature/deployment jobs: test: From 3750772dc307a1713eb38934982f14d0986d1d72 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Sat, 9 Mar 2024 09:54:34 +0000 Subject: [PATCH 33/72] ci(deploy.yml): make gh secrets available as env vars for pytest --- .github/workflows/deploy.yml | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index 56339433..f5de3372 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -33,6 +33,11 @@ jobs: run: | cd backend-python poetry run pytest -k "not mediacloud and not proxied" # TODO: un-skip tests + env: + MEDIACLOUD_API_TOKEN: ${{ secrets.MEDIACLOUD_API_TOKEN }} + ACLED_EMAIL: ${{ secrets.ACLED_EMAIL }} + ACLED_KEY: ${{ secrets.ACLED_KEY }} + ZENROWS_API_KEY: ${{ secrets.ZENROWS_API_KEY }} build-and-push: needs: test From 7974b395e39c5ea66d3e0f7087a571da234bfc57 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Sat, 9 Mar 2024 10:02:05 +0000 Subject: [PATCH 34/72] ci(main.tf): pass through Zenrows env var --- main.tf | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/main.tf b/main.tf index f92f2128..ad6b6471 100644 --- a/main.tf +++ b/main.tf @@ -22,6 +22,11 @@ variable "ACLED_KEY" { description = "The API token for the ACLED API" } +variable "ZENROWS_API_KEY" { + type = string + description = "The API token for the Zenrows API" +} + resource "azurerm_container_group" "media_impact_monitor" { name = "media-impact-monitor" location = azurerm_resource_group.rg.location @@ -40,7 +45,10 @@ resource "azurerm_container_group" "media_impact_monitor" { } environment_variables = { - "MEDIACLOUD_API_TOKEN" = "your-api" + MEDIACLOUD_API_TOKEN = var.MEDIACLOUD_API_TOKEN + ACLED_EMAIL = var.ACLED_EMAIL + ACLED_KEY = var.ACLED_KEY + ZENROWS_API_KEY = var.ZENROWS_API_KEY } } From b0ca4f59bcefde6cbfdfdc66447520f215c165b9 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Sat, 9 Mar 2024 10:02:36 +0000 Subject: [PATCH 35/72] ci(deploy.yml): add terrafrom deployment to gh action --- .github/workflows/deploy.yml | 19 ++++++++++++++----- 1 file changed, 14 insertions(+), 5 deletions(-) diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index f5de3372..911d27e7 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -76,10 +76,19 @@ jobs: with: creds: ${{ secrets.AZURE_CREDENTIALS }} - - name: Azure CLI script - uses: azure/CLI@v1 + - name: Setup Terraform + uses: hashicorp/setup-terraform@v3 with: - azcliversion: latest - inlineScript: | - az account show + terraform_version: 1.7.4 + + - name: Terraform Init + run: terraform init + + - name: Terraform Apply + run: terraform apply -auto-approve + env: + TF_VAR_MEDIACLOUD_API_TOKEN: ${{ secrets.MEDIACLOUD_API_TOKEN }} + TF_VAR_ACLED_EMAIL: ${{ secrets.ACLED_EMAIL }} + TF_VAR_ACLED_KEY: ${{ secrets.ACLED_KEY }} + TF_VAR_ZENROWS_API_KEY: ${{ secrets.ZENROWS_API_KEY }} From b6dc6b0563cdab48c976ef0d050297cb11fca09a Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Sat, 9 Mar 2024 11:59:59 +0000 Subject: [PATCH 36/72] ci(main.tf): use Azure storage backend for terraform state --- .github/workflows/deploy.yml | 6 ++++-- .gitignore | 1 - main.tf | 30 ++++++++++++++++++++++-------- 3 files changed, 26 insertions(+), 11 deletions(-) diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index 911d27e7..bfefd7cc 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -64,6 +64,8 @@ jobs: run: docker push --all-tags socialchangelab/media-impact-monitor deploy: + # this pipeline does not work locally with act + # due to some issues with Azure CLI login needs: build-and-push runs-on: ubuntu-22.04 steps: @@ -75,7 +77,7 @@ jobs: uses: azure/login@v2 with: creds: ${{ secrets.AZURE_CREDENTIALS }} - + - name: Setup Terraform uses: hashicorp/setup-terraform@v3 with: @@ -87,8 +89,8 @@ jobs: - name: Terraform Apply run: terraform apply -auto-approve env: + TF_VAR_DOCKER_IMAGE: socialchangelab/media-impact-monitor:${{ github.sha }} TF_VAR_MEDIACLOUD_API_TOKEN: ${{ secrets.MEDIACLOUD_API_TOKEN }} TF_VAR_ACLED_EMAIL: ${{ secrets.ACLED_EMAIL }} TF_VAR_ACLED_KEY: ${{ secrets.ACLED_KEY }} TF_VAR_ZENROWS_API_KEY: ${{ secrets.ZENROWS_API_KEY }} - diff --git a/.gitignore b/.gitignore index a4d5ebd6..dd5d907e 100644 --- a/.gitignore +++ b/.gitignore @@ -1,5 +1,4 @@ .secrets -.azure ### macOS ------------------------------------------------------------------------ # General diff --git a/main.tf b/main.tf index ad6b6471..6461908b 100644 --- a/main.tf +++ b/main.tf @@ -1,3 +1,12 @@ +terraform { + backend "azurerm" { + resource_group_name = "rg-terraform" + storage_account_name = "terraformstatestoragedfx" + container_name = "tfstate" + key = "terraform.tfstate" + } +} + provider "azurerm" { features {} } @@ -7,23 +16,28 @@ resource "azurerm_resource_group" "rg" { location = "Germany West Central" } +variable "DOCKER_IMAGE" { + type = string + description = "The docker image to deploy" +} + variable "MEDIACLOUD_API_TOKEN" { - type = string + type = string description = "The API token for the Media Cloud API" } variable "ACLED_EMAIL" { - type = string + type = string description = "The email for the ACLED API" } variable "ACLED_KEY" { - type = string + type = string description = "The API token for the ACLED API" } variable "ZENROWS_API_KEY" { - type = string + type = string description = "The API token for the Zenrows API" } @@ -35,7 +49,7 @@ resource "azurerm_container_group" "media_impact_monitor" { container { name = "media-impact-monitor" - image = "socialchangelab/media-impact-monitor:latest" + image = var.DOCKER_IMAGE cpu = "0.5" memory = "1.5" @@ -46,9 +60,9 @@ resource "azurerm_container_group" "media_impact_monitor" { environment_variables = { MEDIACLOUD_API_TOKEN = var.MEDIACLOUD_API_TOKEN - ACLED_EMAIL = var.ACLED_EMAIL - ACLED_KEY = var.ACLED_KEY - ZENROWS_API_KEY = var.ZENROWS_API_KEY + ACLED_EMAIL = var.ACLED_EMAIL + ACLED_KEY = var.ACLED_KEY + ZENROWS_API_KEY = var.ZENROWS_API_KEY } } From e2d96cad66c36aefee22243ab3474d115bcc7790 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Sat, 9 Mar 2024 12:17:36 +0000 Subject: [PATCH 37/72] ci(deploy.yml): pass Azure credentials as env to terraform --- .github/workflows/deploy.yml | 9 +++++++++ 1 file changed, 9 insertions(+) diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index bfefd7cc..d097edd0 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -85,10 +85,19 @@ jobs: - name: Terraform Init run: terraform init + env: + ARM_CLIENT_ID: ${{ secrets.ARM_CLIENT_ID }} + ARM_CLIENT_SECRET: ${{ secrets.ARM_CLIENT_SECRET }} + ARM_SUBSCRIPTION_ID: ${{ secrets.ARM_SUBSCRIPTION_ID }} + ARM_TENANT_ID: ${{ secrets.ARM_TENANT_ID }} - name: Terraform Apply run: terraform apply -auto-approve env: + ARM_CLIENT_ID: ${{ secrets.ARM_CLIENT_ID }} + ARM_CLIENT_SECRET: ${{ secrets.ARM_CLIENT_SECRET }} + ARM_SUBSCRIPTION_ID: ${{ secrets.ARM_SUBSCRIPTION_ID }} + ARM_TENANT_ID: ${{ secrets.ARM_TENANT_ID }} TF_VAR_DOCKER_IMAGE: socialchangelab/media-impact-monitor:${{ github.sha }} TF_VAR_MEDIACLOUD_API_TOKEN: ${{ secrets.MEDIACLOUD_API_TOKEN }} TF_VAR_ACLED_EMAIL: ${{ secrets.ACLED_EMAIL }} From 01a0f5b54dacdaf3c3cdee56422bb94cb48f8d2d Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Sat, 9 Mar 2024 12:29:51 +0000 Subject: [PATCH 38/72] ci(deploy.yml): try removing explicit azure login step --- .github/workflows/deploy.yml | 5 ----- README.md | 6 +++++- 2 files changed, 5 insertions(+), 6 deletions(-) diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index d097edd0..9ac3ed3c 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -73,11 +73,6 @@ jobs: - name: Checkout code uses: actions/checkout@v4 - - name: Setup Azure CLI - uses: azure/login@v2 - with: - creds: ${{ secrets.AZURE_CREDENTIALS }} - - name: Setup Terraform uses: hashicorp/setup-terraform@v3 with: diff --git a/README.md b/README.md index d7cc78e2..419588b2 100644 --- a/README.md +++ b/README.md @@ -1 +1,5 @@ -# media-impact-monitor \ No newline at end of file +# media-impact-monitor + + +[![Project Status: WIP – Initial development is in progress](https://www.repostatus.org/badges/latest/wip.svg)](https://www.repostatus.org/#wip) + From 6a00eb28a8009be68e49ab1d866027cd115c01fe Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Sat, 9 Mar 2024 12:42:18 +0000 Subject: [PATCH 39/72] ci(deploy.yml): disable first pripeline parts to fail faster --- .github/workflows/deploy.yml | 117 +++++++++++++++++++---------------- 1 file changed, 62 insertions(+), 55 deletions(-) diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index 9ac3ed3c..6d287508 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -8,71 +8,78 @@ on: - feature/deployment jobs: - test: - runs-on: ubuntu-22.04 - steps: - - - name: Checkout code - uses: actions/checkout@v4 - - - name: Set up Python - uses: actions/setup-python@v2 - with: - python-version: '3.10' - - - name: Install Poetry - run: | - pip install poetry - - - name: Install dependencies - run: | - cd backend-python - poetry install - - - name: Run pytest - run: | - cd backend-python - poetry run pytest -k "not mediacloud and not proxied" # TODO: un-skip tests - env: - MEDIACLOUD_API_TOKEN: ${{ secrets.MEDIACLOUD_API_TOKEN }} - ACLED_EMAIL: ${{ secrets.ACLED_EMAIL }} - ACLED_KEY: ${{ secrets.ACLED_KEY }} - ZENROWS_API_KEY: ${{ secrets.ZENROWS_API_KEY }} - - build-and-push: - needs: test - runs-on: ubuntu-22.04 - steps: - - - name: Checkout code - uses: actions/checkout@v4 - - - name: Login to Docker Registry - uses: docker/login-action@v3 - with: - username: ${{ secrets.DOCKER_USERNAME }} - password: ${{ secrets.DOCKER_PASSWORD }} - - - name: Build Docker image - run: | - docker build \ - -t socialchangelab/media-impact-monitor:${{ github.sha }} \ - -t socialchangelab/media-impact-monitor:latest \ - . - - - name: Push Docker image - run: docker push --all-tags socialchangelab/media-impact-monitor + # test: + # runs-on: ubuntu-22.04 + # steps: + + # - name: Checkout code + # uses: actions/checkout@v4 + + # - name: Set up Python + # uses: actions/setup-python@v2 + # with: + # python-version: '3.10' + + # - name: Install Poetry + # run: | + # pip install poetry + + # - name: Install dependencies + # run: | + # cd backend-python + # poetry install + + # - name: Run pytest + # run: | + # cd backend-python + # poetry run pytest -k "not mediacloud and not proxied" # TODO: un-skip tests + # env: + # MEDIACLOUD_API_TOKEN: ${{ secrets.MEDIACLOUD_API_TOKEN }} + # ACLED_EMAIL: ${{ secrets.ACLED_EMAIL }} + # ACLED_KEY: ${{ secrets.ACLED_KEY }} + # ZENROWS_API_KEY: ${{ secrets.ZENROWS_API_KEY }} + + # build-and-push: + # needs: test + # runs-on: ubuntu-22.04 + # steps: + + # - name: Checkout code + # uses: actions/checkout@v4 + + # - name: Login to Docker Registry + # uses: docker/login-action@v3 + # with: + # username: ${{ secrets.DOCKER_USERNAME }} + # password: ${{ secrets.DOCKER_PASSWORD }} + + # - name: Build Docker image + # run: | + # docker build \ + # -t socialchangelab/media-impact-monitor:${{ github.sha }} \ + # -t socialchangelab/media-impact-monitor:latest \ + # . + + # - name: Push Docker image + # run: docker push --all-tags socialchangelab/media-impact-monitor deploy: # this pipeline does not work locally with act # due to some issues with Azure CLI login - needs: build-and-push + # needs: build-and-push runs-on: ubuntu-22.04 steps: - name: Checkout code uses: actions/checkout@v4 + - name: Setup Azure CLI + uses: azure/login@v2 + with: + client-id: ${{ secrets.ARM_CLIENT_ID }} + tenant-id: ${{ secrets.ARM_TENANT_ID }} + subscription-id: ${{ secrets.ARM_SUBSCRIPTION_ID }} + - name: Setup Terraform uses: hashicorp/setup-terraform@v3 with: From 57b03a422004a279161d2faed19c0bf646a85887 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Sat, 9 Mar 2024 14:26:43 +0000 Subject: [PATCH 40/72] ci(deploy.yml): use creds again --- .github/workflows/deploy.yml | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index 6d287508..0b02179f 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -76,9 +76,7 @@ jobs: - name: Setup Azure CLI uses: azure/login@v2 with: - client-id: ${{ secrets.ARM_CLIENT_ID }} - tenant-id: ${{ secrets.ARM_TENANT_ID }} - subscription-id: ${{ secrets.ARM_SUBSCRIPTION_ID }} + creds: ${{ secrets.AZURE_CREDENTIALS }} - name: Setup Terraform uses: hashicorp/setup-terraform@v3 From 463cb1315126e0367610f4c9d9f71fe3fe1ec94a Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Sat, 9 Mar 2024 14:50:11 +0000 Subject: [PATCH 41/72] ci(main.tf): make things more explicit --- main.tf | 41 ++++++++++++++++------------------------- 1 file changed, 16 insertions(+), 25 deletions(-) diff --git a/main.tf b/main.tf index 6461908b..b8124771 100644 --- a/main.tf +++ b/main.tf @@ -1,3 +1,15 @@ +variable "ARM_SUBSCRIPTION_ID" {} +variable "ARM_CLIENT_ID" {} +variable "ARM_CLIENT_SECRET" {} +variable "ARM_TENANT_ID" {} + +variable "DOCKER_IMAGE" {} + +variable "MEDIACLOUD_API_TOKEN" {} +variable "ACLED_EMAIL" {} +variable "ACLED_KEY" {} +variable "ZENROWS_API_KEY" {} + terraform { backend "azurerm" { resource_group_name = "rg-terraform" @@ -8,6 +20,10 @@ terraform { } provider "azurerm" { + subscription_id = var.ARM_SUBSCRIPTION_ID + client_id = var.ARM_CLIENT_ID + client_secret = var.ARM_CLIENT_SECRET + tenant_id = var.ARM_TENANT_ID features {} } @@ -16,31 +32,6 @@ resource "azurerm_resource_group" "rg" { location = "Germany West Central" } -variable "DOCKER_IMAGE" { - type = string - description = "The docker image to deploy" -} - -variable "MEDIACLOUD_API_TOKEN" { - type = string - description = "The API token for the Media Cloud API" -} - -variable "ACLED_EMAIL" { - type = string - description = "The email for the ACLED API" -} - -variable "ACLED_KEY" { - type = string - description = "The API token for the ACLED API" -} - -variable "ZENROWS_API_KEY" { - type = string - description = "The API token for the Zenrows API" -} - resource "azurerm_container_group" "media_impact_monitor" { name = "media-impact-monitor" location = azurerm_resource_group.rg.location From d773a151d1c9c072e2c2bed5150240d54e593a6f Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Sat, 9 Mar 2024 14:55:24 +0000 Subject: [PATCH 42/72] ci(deploy.yml): pass variables twice, because why not --- .github/workflows/deploy.yml | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index 0b02179f..1875bf9f 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -98,6 +98,10 @@ jobs: ARM_CLIENT_SECRET: ${{ secrets.ARM_CLIENT_SECRET }} ARM_SUBSCRIPTION_ID: ${{ secrets.ARM_SUBSCRIPTION_ID }} ARM_TENANT_ID: ${{ secrets.ARM_TENANT_ID }} + TF_VAR_ARM_CLIENT_ID: ${{ secrets.ARM_CLIENT_ID }} + TF_VAR_ARM_CLIENT_SECRET: ${{ secrets.ARM_CLIENT_SECRET }} + TF_VAR_ARM_SUBSCRIPTION_ID: ${{ secrets.ARM_SUBSCRIPTION_ID }} + TF_VAR_ARM_TENANT_ID: ${{ secrets.ARM_TENANT_ID }} TF_VAR_DOCKER_IMAGE: socialchangelab/media-impact-monitor:${{ github.sha }} TF_VAR_MEDIACLOUD_API_TOKEN: ${{ secrets.MEDIACLOUD_API_TOKEN }} TF_VAR_ACLED_EMAIL: ${{ secrets.ACLED_EMAIL }} From 7da23066e149a8ea3ce5e0bdc5b84d72f3dea9b5 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Sat, 9 Mar 2024 15:02:44 +0000 Subject: [PATCH 43/72] ci(deploy.yml): remove some variables again, let's see --- .github/workflows/deploy.yml | 9 --------- 1 file changed, 9 deletions(-) diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index 1875bf9f..f048c87b 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -85,19 +85,10 @@ jobs: - name: Terraform Init run: terraform init - env: - ARM_CLIENT_ID: ${{ secrets.ARM_CLIENT_ID }} - ARM_CLIENT_SECRET: ${{ secrets.ARM_CLIENT_SECRET }} - ARM_SUBSCRIPTION_ID: ${{ secrets.ARM_SUBSCRIPTION_ID }} - ARM_TENANT_ID: ${{ secrets.ARM_TENANT_ID }} - name: Terraform Apply run: terraform apply -auto-approve env: - ARM_CLIENT_ID: ${{ secrets.ARM_CLIENT_ID }} - ARM_CLIENT_SECRET: ${{ secrets.ARM_CLIENT_SECRET }} - ARM_SUBSCRIPTION_ID: ${{ secrets.ARM_SUBSCRIPTION_ID }} - ARM_TENANT_ID: ${{ secrets.ARM_TENANT_ID }} TF_VAR_ARM_CLIENT_ID: ${{ secrets.ARM_CLIENT_ID }} TF_VAR_ARM_CLIENT_SECRET: ${{ secrets.ARM_CLIENT_SECRET }} TF_VAR_ARM_SUBSCRIPTION_ID: ${{ secrets.ARM_SUBSCRIPTION_ID }} From 59b7f39f56582fc32abe4d94ca2d85981a937bff Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Sat, 9 Mar 2024 15:10:17 +0000 Subject: [PATCH 44/72] ci(deploy.yml): add some variables back (this is art) --- .github/workflows/deploy.yml | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index f048c87b..0111e5a9 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -85,6 +85,11 @@ jobs: - name: Terraform Init run: terraform init + env: + ARM_CLIENT_ID: ${{ secrets.ARM_CLIENT_ID }} + ARM_CLIENT_SECRET: ${{ secrets.ARM_CLIENT_SECRET }} + ARM_SUBSCRIPTION_ID: ${{ secrets.ARM_SUBSCRIPTION_ID }} + ARM_TENANT_ID: ${{ secrets.ARM_TENANT_ID }} - name: Terraform Apply run: terraform apply -auto-approve From f0561358ab60f0aae3660e88e6514a6ef3a1dad5 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Sat, 9 Mar 2024 15:11:23 +0000 Subject: [PATCH 45/72] ci(deploy.yml): enable docker build&push again --- .github/workflows/deploy.yml | 42 ++++++++++++++++++------------------ 1 file changed, 21 insertions(+), 21 deletions(-) diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index 0111e5a9..186e6b98 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -39,29 +39,29 @@ jobs: # ACLED_KEY: ${{ secrets.ACLED_KEY }} # ZENROWS_API_KEY: ${{ secrets.ZENROWS_API_KEY }} - # build-and-push: - # needs: test - # runs-on: ubuntu-22.04 - # steps: - - # - name: Checkout code - # uses: actions/checkout@v4 - - # - name: Login to Docker Registry - # uses: docker/login-action@v3 - # with: - # username: ${{ secrets.DOCKER_USERNAME }} - # password: ${{ secrets.DOCKER_PASSWORD }} + build-and-push: + needs: test + runs-on: ubuntu-22.04 + steps: - # - name: Build Docker image - # run: | - # docker build \ - # -t socialchangelab/media-impact-monitor:${{ github.sha }} \ - # -t socialchangelab/media-impact-monitor:latest \ - # . + - name: Checkout code + uses: actions/checkout@v4 - # - name: Push Docker image - # run: docker push --all-tags socialchangelab/media-impact-monitor + - name: Login to Docker Registry + uses: docker/login-action@v3 + with: + username: ${{ secrets.DOCKER_USERNAME }} + password: ${{ secrets.DOCKER_PASSWORD }} + + - name: Build Docker image + run: | + docker build \ + -t socialchangelab/media-impact-monitor:${{ github.sha }} \ + -t socialchangelab/media-impact-monitor:latest \ + . + + - name: Push Docker image + run: docker push --all-tags socialchangelab/media-impact-monitor deploy: # this pipeline does not work locally with act From 7ec1da482e201c522a44cee73642e581b8b206c7 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Sat, 9 Mar 2024 15:12:27 +0000 Subject: [PATCH 46/72] ci(deploy.yml): seems we actually needed all of the variables! --- .github/workflows/deploy.yml | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index 186e6b98..9e57cfff 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -94,6 +94,10 @@ jobs: - name: Terraform Apply run: terraform apply -auto-approve env: + ARM_CLIENT_ID: ${{ secrets.ARM_CLIENT_ID }} + ARM_CLIENT_SECRET: ${{ secrets.ARM_CLIENT_SECRET }} + ARM_SUBSCRIPTION_ID: ${{ secrets.ARM_SUBSCRIPTION_ID }} + ARM_TENANT_ID: ${{ secrets.ARM_TENANT_ID }} TF_VAR_ARM_CLIENT_ID: ${{ secrets.ARM_CLIENT_ID }} TF_VAR_ARM_CLIENT_SECRET: ${{ secrets.ARM_CLIENT_SECRET }} TF_VAR_ARM_SUBSCRIPTION_ID: ${{ secrets.ARM_SUBSCRIPTION_ID }} From ea3f4d90c06d88c7c9a07b2798d470099a4112ed Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Sat, 9 Mar 2024 15:14:04 +0000 Subject: [PATCH 47/72] ci(deploy.yml): fix dependencies --- .github/workflows/deploy.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index 9e57cfff..3647dfe9 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -40,7 +40,7 @@ jobs: # ZENROWS_API_KEY: ${{ secrets.ZENROWS_API_KEY }} build-and-push: - needs: test + # needs: test runs-on: ubuntu-22.04 steps: @@ -66,7 +66,7 @@ jobs: deploy: # this pipeline does not work locally with act # due to some issues with Azure CLI login - # needs: build-and-push + needs: build-and-push runs-on: ubuntu-22.04 steps: From 079da7baafa7a2473d3437b6c1f465850142d505 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Sat, 9 Mar 2024 15:29:34 +0000 Subject: [PATCH 48/72] chore(api.py): increment version (for testing purposes) --- backend-python/media_impact_monitor/api.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/backend-python/media_impact_monitor/api.py b/backend-python/media_impact_monitor/api.py index 192c0fe3..c5452164 100644 --- a/backend-python/media_impact_monitor/api.py +++ b/backend-python/media_impact_monitor/api.py @@ -23,7 +23,7 @@ @app.get("/", response_class=PlainTextResponse) def welcome() -> str: - version = "0.1.0" + version = "0.1.1" return f"Media Impact Monitor API, v{version}\nDocumentation: /docs" From 44243e5ee1ade6192d8469020e78a0fc01744702 Mon Sep 17 00:00:00 2001 From: Lennart Klein <31488915+kleinlennart@users.noreply.github.com> Date: Wed, 13 Mar 2024 14:05:38 +0000 Subject: [PATCH 49/72] add R renv support --- .devcontainer/.Rprofile | 6 + .devcontainer/devcontainer.json | 86 +- .devcontainer/postCreateCommand.sh | 23 +- .devcontainer/postStartCommand.sh | 4 +- backend-R/.Rprofile | 10 + backend-R/README.md | 22 + .../backend-R.Rproj | 0 backend-R/renv.lock | 427 ++++++ backend-R/renv/.gitignore | 7 + backend-R/renv/activate.R | 1201 +++++++++++++++++ backend-R/renv/settings.json | 19 + renv/.gitignore | 7 + 12 files changed, 1779 insertions(+), 33 deletions(-) create mode 100644 .devcontainer/.Rprofile create mode 100644 backend-R/.Rprofile create mode 100644 backend-R/README.md rename media-impact-monitor.Rproj => backend-R/backend-R.Rproj (100%) create mode 100644 backend-R/renv.lock create mode 100644 backend-R/renv/.gitignore create mode 100644 backend-R/renv/activate.R create mode 100644 backend-R/renv/settings.json create mode 100644 renv/.gitignore diff --git a/.devcontainer/.Rprofile b/.devcontainer/.Rprofile new file mode 100644 index 00000000..ba71a6f2 --- /dev/null +++ b/.devcontainer/.Rprofile @@ -0,0 +1,6 @@ +## Copy to '/home/vscode/.Rprofile' in postCreateCommand.sh + +cat("Loading global R presets from '/home/vscode/.Rprofile'....\n") + +setwd("/workspaces/media-impact-monitor/backend-R") +renv::load(project = "/workspaces/media-impact-monitor/backend-R") diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json index 5dc55d16..16391a97 100644 --- a/.devcontainer/devcontainer.json +++ b/.devcontainer/devcontainer.json @@ -5,47 +5,72 @@ // Or use a Dockerfile or Docker Compose file. More info: https://containers.dev/guide/dockerfile "image": "mcr.microsoft.com/devcontainers/base:jammy", "features": { - "ghcr.io/devcontainers/features/azure-cli:1": {}, - "ghcr.io/devcontainers/features/node:1": {}, + // Web Dev Stack –-------------------------------------------------------- + + // https://github.com/devcontainers/features/tree/main/src/node + "ghcr.io/devcontainers/features/node:1": { + "version": "lts" // Node.js version + }, + + "ghcr.io/devcontainers/features/azure-cli:1": { }, + "ghcr.io/stuartleeks/dev-container-features/azure-cli-persistence:0": { }, + "ghcr.io/dhoeric/features/google-cloud-cli:1": { }, + "ghcr.io/joshuanianji/devcontainer-features/gcloud-cli-persistence:1": { }, + + // Python Stack –-------------------------------------------------------- + "ghcr.io/devcontainers/features/python:1": { "installTools": true, "version": "3.10" }, - "ghcr.io/rocker-org/devcontainer-features/quarto-cli:1": { - "installTinyTex": false, // not supported, must be installed manually - "installChromium": true - }, + "ghcr.io/devcontainers-contrib/features/poetry:2": { }, + "ghcr.io/nikobockerman/devcontainer-features/poetry-persistent-cache:1": { }, + "ghcr.io/devcontainers-contrib/features/ruff:1": { }, + "ghcr.io/devcontainers-contrib/features/starship:1": { }, + + + // R Stack –-------------------------------------------------------- + + // System dependencies + // "ghcr.io/devcontainers-contrib/features/apt-get-packages:1": { + // "packages": "libfribidi-dev,libharfbuzz-dev,cmake" + // }, + + // https://github.com/rocker-org/devcontainer-features/tree/main/src/r-apt + // NOTE: always installs the latest R Version (not fixed!) "ghcr.io/rocker-org/devcontainer-features/r-apt:0": { - "installDevTools": true, + "vscodeRSupport": "full", + "installDevTools": true, // for debugging + "installREnv": false, // -> install with renv cache feature + "installRMarkdown": false, // needed? + "installJupyterlab": false, + "installRadian": true, // better R console "installVscDebugger": true, - "useTesting": true, - "vscodeRSupport": "minimal" - }, - "ghcr.io/rocker-org/devcontainer-features/r-packages:1": { - "packages": [ - // "easystats" - ], - "installSystemRequirements": true + "useTesting": true, // for Debian, default: true + "installBspm": false }, + // https://github.com/rocker-org/devcontainer-features/tree/main/src/rstudio-server "ghcr.io/rocker-org/devcontainer-features/rstudio-server:0": { "singleUser": true, "version": "stable" }, - "ghcr.io/devcontainers-contrib/features/poetry:2": {}, - "ghcr.io/devcontainers-contrib/features/ruff:1": {}, - "ghcr.io/devcontainers-contrib/features/starship:1": {}, - "ghcr.io/dhoeric/features/google-cloud-cli:1": {}, - "ghcr.io/stuartleeks/dev-container-features/azure-cli-persistence:0": {}, - "ghcr.io/joshuanianji/devcontainer-features/gcloud-cli-persistence:1": {}, - "ghcr.io/nikobockerman/devcontainer-features/poetry-persistent-cache:1": {}, - "ghcr.io/rocker-org/devcontainer-features/r-history:0": {}, - "ghcr.io/stuartleeks/dev-container-features/shell-history:0": {} + // https://github.com/rocker-org/devcontainer-features/tree/main/src/quarto-cli + "ghcr.io/rocker-org/devcontainer-features/quarto-cli:1": { + "installTinyTex": false, + "installChromium": false // https://github.com/rocker-org/devcontainer-features/tree/main/src/quarto-cli#install-chromium + }, + // https://github.com/rocker-org/devcontainer-features/tree/main/src/renv-cache + "ghcr.io/rocker-org/devcontainer-features/renv-cache:0": { }, + + // Misc –----------------------------------------------------------------------------------- + + "ghcr.io/stuartleeks/dev-container-features/shell-history:0": { } }, // Ports & Server ---------------------------------------------------------------------------- - // start RStudio Server process in container - "postAttachCommand": { - "rstudio-start": "rserver" - }, + // start RStudio Server process in container, not needed automatically + // "postAttachCommand": { + // "rstudio-start": "rserver" + // }, // https://containers.dev/implementors/json_reference/#port-attributes "forwardPorts": [ 8787 @@ -83,8 +108,11 @@ "ms-python.python", "ms-toolsai.jupyter", "charliermarsh.ruff", - "tamasfe.even-better-toml", + "tamasfe.even-better-toml" ], + // "codespaces": { + // "openFiles": [ "README.md" ] + // }, "settings": { "editor.codeActionsOnSave": { "source.fixAll": "always", diff --git a/.devcontainer/postCreateCommand.sh b/.devcontainer/postCreateCommand.sh index 84f524eb..01f248bd 100644 --- a/.devcontainer/postCreateCommand.sh +++ b/.devcontainer/postCreateCommand.sh @@ -1,5 +1,24 @@ #!/usr/bin/bash ## postCreateCommand.sh -echo 'eval "$(starship init bash)"' >> ~/.bashrc; -cd backend-python && poetry install; # install everything once at setup +## Node Startup +# https://github.com/devcontainers/features/tree/main/src/node#using-nvm-from-postcreatecommand-or-another-lifecycle-command +# . ${NVM_DIR}/nvm.sh && nvm install --lts + +## R ---- + +## R system dependencies +sudo apt-get update && sudo apt-get install -y \ + libfribidi-dev \ + libharfbuzz-dev \ + cmake + +## setup R env prefs +cp /workspaces/media-impact-monitor/.devcontainer/.Rprofile /home/vscode/.Rprofile + +Rscript -e 'renv::restore(project = "/workspaces/media-impact-monitor/backend-R")' + +#### + +echo 'eval "$(starship init bash)"' >> ~/.bashrc +cd backend-python && poetry install # install everything once at setup \ No newline at end of file diff --git a/.devcontainer/postStartCommand.sh b/.devcontainer/postStartCommand.sh index 08963572..b3021c39 100644 --- a/.devcontainer/postStartCommand.sh +++ b/.devcontainer/postStartCommand.sh @@ -1,5 +1,5 @@ #!/usr/bin/bash ## postStartCommand.sh -cd backend-python && poetry install; # install changed packages -bash +cd backend-python && poetry install # install changed packages +# bash diff --git a/backend-R/.Rprofile b/backend-R/.Rprofile new file mode 100644 index 00000000..297746f6 --- /dev/null +++ b/backend-R/.Rprofile @@ -0,0 +1,10 @@ +# library(renv) + +renv::settings$snapshot.type("all") +# renv::config$ + +# custom cache location +# renv::paths$cache("/path/to/your/cache") + + +source("renv/activate.R") diff --git a/backend-R/README.md b/backend-R/README.md new file mode 100644 index 00000000..681b5ba4 --- /dev/null +++ b/backend-R/README.md @@ -0,0 +1,22 @@ + + + +## {renv} + +- ?renv::settings + +``` +> .libPaths() +[1] "/workspaces/media-impact-monitor/backend-R/renv/library/R-4.3/x86_64-pc-linux-gnu" +[2] "/usr/local/lib/R/site-library" +[3] "/usr/lib/R/site-library" +[4] "/usr/lib/R/library" +``` + +# Installed packages in global library: `/usr/lib/R/site-library` + +### Within renv project folder + +> .libPaths() +[1] "/workspaces/media-impact-monitor/backend-R/renv/library/R-4.3/x86_64-pc-linux-gnu" +[2] "/home/vscode/.cache/R/renv/sandbox/R-4.3/x86_64-pc-linux-gnu/9a444a72" diff --git a/media-impact-monitor.Rproj b/backend-R/backend-R.Rproj similarity index 100% rename from media-impact-monitor.Rproj rename to backend-R/backend-R.Rproj diff --git a/backend-R/renv.lock b/backend-R/renv.lock new file mode 100644 index 00000000..14d576ef --- /dev/null +++ b/backend-R/renv.lock @@ -0,0 +1,427 @@ +{ + "R": { + "Version": "4.3.3", + "Repositories": [ + { + "Name": "CRAN", + "URL": "https://cloud.r-project.org" + } + ] + }, + "Packages": { + "R6": { + "Package": "R6", + "Version": "2.5.1", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R" + ], + "Hash": "470851b6d5d0ac559e9d01bb352b4021" + }, + "askpass": { + "Package": "askpass", + "Version": "1.2.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "sys" + ], + "Hash": "cad6cf7f1d5f6e906700b9d3e718c796" + }, + "cli": { + "Package": "cli", + "Version": "3.6.2", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "utils" + ], + "Hash": "1216ac65ac55ec0058a6f75d7ca0fd52" + }, + "clipr": { + "Package": "clipr", + "Version": "0.8.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "utils" + ], + "Hash": "3f038e5ac7f41d4ac41ce658c85e3042" + }, + "crayon": { + "Package": "crayon", + "Version": "1.5.2", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "grDevices", + "methods", + "utils" + ], + "Hash": "e8a1e41acf02548751f45c718d55aa6a" + }, + "credentials": { + "Package": "credentials", + "Version": "2.0.1", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "askpass", + "curl", + "jsonlite", + "openssl", + "sys" + ], + "Hash": "c7844b32098dcbd1c59cbd8dddb4ecc6" + }, + "curl": { + "Package": "curl", + "Version": "5.2.1", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R" + ], + "Hash": "411ca2c03b1ce5f548345d2fc2685f7a" + }, + "desc": { + "Package": "desc", + "Version": "1.4.3", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "R6", + "cli", + "utils" + ], + "Hash": "99b79fcbd6c4d1ce087f5c5c758b384f" + }, + "fs": { + "Package": "fs", + "Version": "1.6.3", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "methods" + ], + "Hash": "47b5f30c720c23999b913a1a635cf0bb" + }, + "gert": { + "Package": "gert", + "Version": "2.0.1", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "askpass", + "credentials", + "openssl", + "rstudioapi", + "sys", + "zip" + ], + "Hash": "f70d3fe2d9e7654213a946963d1591eb" + }, + "gh": { + "Package": "gh", + "Version": "1.4.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "cli", + "gitcreds", + "httr2", + "ini", + "jsonlite", + "rlang" + ], + "Hash": "03533b1c875028233598f848fda44c4c" + }, + "gitcreds": { + "Package": "gitcreds", + "Version": "0.1.2", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R" + ], + "Hash": "ab08ac61f3e1be454ae21911eb8bc2fe" + }, + "glue": { + "Package": "glue", + "Version": "1.7.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "methods" + ], + "Hash": "e0b3a53876554bd45879e596cdb10a52" + }, + "httr2": { + "Package": "httr2", + "Version": "1.0.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "R6", + "cli", + "curl", + "glue", + "lifecycle", + "magrittr", + "openssl", + "rappdirs", + "rlang", + "vctrs", + "withr" + ], + "Hash": "e2b30f1fc039a0bab047dd52bb20ef71" + }, + "ini": { + "Package": "ini", + "Version": "0.3.1", + "Source": "Repository", + "Repository": "CRAN", + "Hash": "6154ec2223172bce8162d4153cda21f7" + }, + "jsonlite": { + "Package": "jsonlite", + "Version": "1.8.8", + "Source": 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"1.0.2", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "cli", + "lifecycle", + "magrittr", + "rlang", + "vctrs" + ], + "Hash": "1cba04a4e9414bdefc9dcaa99649a8dc" + }, + "rappdirs": { + "Package": "rappdirs", + "Version": "0.3.3", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R" + ], + "Hash": "5e3c5dc0b071b21fa128676560dbe94d" + }, + "renv": { + "Package": "renv", + "Version": "1.0.5", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "utils" + ], + "Hash": "32c3f93e8360f667ca5863272ec8ba6a" + }, + "rlang": { + "Package": "rlang", + "Version": "1.1.3", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "utils" + ], + "Hash": "42548638fae05fd9a9b5f3f437fbbbe2" + }, + "rprojroot": { + "Package": "rprojroot", + "Version": "2.0.4", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R" + ], + "Hash": "4c8415e0ec1e29f3f4f6fc108bef0144" + }, + "rstudioapi": { + 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"gert", + "gh", + "glue", + "jsonlite", + "lifecycle", + "purrr", + "rappdirs", + "rlang", + "rprojroot", + "rstudioapi", + "stats", + "utils", + "whisker", + "withr", + "yaml" + ], + "Hash": "d524fd42c517035027f866064417d7e6" + }, + "vctrs": { + "Package": "vctrs", + "Version": "0.6.5", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "cli", + "glue", + "lifecycle", + "rlang" + ], + "Hash": "c03fa420630029418f7e6da3667aac4a" + }, + "whisker": { + "Package": "whisker", + "Version": "0.4.1", + "Source": "Repository", + "Repository": "CRAN", + "Hash": "c6abfa47a46d281a7d5159d0a8891e88" + }, + "withr": { + "Package": "withr", + "Version": "3.0.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "grDevices", + "graphics" + ], + "Hash": "d31b6c62c10dcf11ec530ca6b0dd5d35" + }, + "yaml": { + "Package": "yaml", + "Version": "2.3.8", + "Source": "Repository", + "Repository": "CRAN", + "Hash": "29240487a071f535f5e5d5a323b7afbd" + }, + "zip": { + "Package": "zip", + "Version": "2.3.1", + "Source": "Repository", + "Repository": "CRAN", + "Hash": "fcc4bd8e6da2d2011eb64a5e5cc685ab" + } + } +} diff --git a/backend-R/renv/.gitignore b/backend-R/renv/.gitignore new file mode 100644 index 00000000..0ec0cbba --- /dev/null +++ b/backend-R/renv/.gitignore @@ -0,0 +1,7 @@ +library/ +local/ +cellar/ +lock/ +python/ +sandbox/ +staging/ diff --git a/backend-R/renv/activate.R b/backend-R/renv/activate.R new file mode 100644 index 00000000..9b2e7f18 --- /dev/null +++ b/backend-R/renv/activate.R @@ -0,0 +1,1201 @@ + +local({ + + # the requested version of renv + version <- "1.0.5" + attr(version, "sha") <- NULL + + # the project directory + project <- getwd() + + # use start-up diagnostics if enabled + diagnostics <- Sys.getenv("RENV_STARTUP_DIAGNOSTICS", unset = "FALSE") + if (diagnostics) { + start <- Sys.time() + profile <- tempfile("renv-startup-", fileext = ".Rprof") + utils::Rprof(profile) + on.exit({ + utils::Rprof(NULL) + elapsed <- signif(difftime(Sys.time(), start, units = "auto"), digits = 2L) + writeLines(sprintf("- renv took %s to run the autoloader.", format(elapsed))) + writeLines(sprintf("- Profile: %s", profile)) + print(utils::summaryRprof(profile)) + }, add = TRUE) + } + + # figure out whether the autoloader is enabled + enabled <- local({ + + # first, check config option + override <- getOption("renv.config.autoloader.enabled") + if (!is.null(override)) + return(override) + + # if we're being run in a context where R_LIBS is already set, + # don't load -- presumably we're being run as a sub-process and + # the parent process has already set up library paths for us + rcmd <- Sys.getenv("R_CMD", unset = NA) + rlibs <- Sys.getenv("R_LIBS", unset = NA) + if (!is.na(rlibs) && !is.na(rcmd)) + return(FALSE) + + # next, check environment variables + # TODO: prefer using the configuration one in the future + envvars <- c( + "RENV_CONFIG_AUTOLOADER_ENABLED", + "RENV_AUTOLOADER_ENABLED", + "RENV_ACTIVATE_PROJECT" + ) + + for (envvar in envvars) { + envval <- Sys.getenv(envvar, unset = NA) + if (!is.na(envval)) + return(tolower(envval) %in% c("true", "t", "1")) + } + + # enable by default + TRUE + + }) + + # bail if we're not enabled + if (!enabled) { + + # if we're not enabled, we might still need to manually load + # the user profile here + profile <- Sys.getenv("R_PROFILE_USER", unset = "~/.Rprofile") + if (file.exists(profile)) { + cfg <- Sys.getenv("RENV_CONFIG_USER_PROFILE", unset = "TRUE") + if (tolower(cfg) %in% c("true", "t", "1")) + sys.source(profile, envir = globalenv()) + } + + return(FALSE) + + } + + # avoid recursion + if (identical(getOption("renv.autoloader.running"), TRUE)) { + warning("ignoring recursive attempt to run renv autoloader") + return(invisible(TRUE)) + } + + # signal that we're loading renv during R startup + options(renv.autoloader.running = TRUE) + on.exit(options(renv.autoloader.running = NULL), add = TRUE) + + # signal that we've consented to use renv + options(renv.consent = TRUE) + + # load the 'utils' package eagerly -- this ensures that renv shims, which + # mask 'utils' packages, will come first on the search path + library(utils, lib.loc = .Library) + + # unload renv if it's already been loaded + if ("renv" %in% loadedNamespaces()) + unloadNamespace("renv") + + # load bootstrap tools + `%||%` <- function(x, y) { + if (is.null(x)) y else x + } + + catf <- function(fmt, ..., appendLF = TRUE) { + + quiet <- getOption("renv.bootstrap.quiet", default = FALSE) + if (quiet) + return(invisible()) + + msg <- sprintf(fmt, ...) + cat(msg, file = stdout(), sep = if (appendLF) "\n" else "") + + invisible(msg) + + } + + header <- function(label, + ..., + prefix = "#", + suffix = "-", + n = min(getOption("width"), 78)) + { + label <- sprintf(label, ...) + n <- max(n - nchar(label) - nchar(prefix) - 2L, 8L) + if (n <= 0) + return(paste(prefix, label)) + + tail <- paste(rep.int(suffix, n), collapse = "") + paste0(prefix, " ", label, " ", tail) + + } + + startswith <- function(string, prefix) { + substring(string, 1, nchar(prefix)) == prefix + } + + bootstrap <- function(version, library) { + + friendly <- renv_bootstrap_version_friendly(version) + section <- header(sprintf("Bootstrapping renv %s", friendly)) + catf(section) + + # attempt to download renv + catf("- Downloading renv ... ", appendLF = FALSE) + withCallingHandlers( + tarball <- renv_bootstrap_download(version), + error = function(err) { + catf("FAILED") + stop("failed to download:\n", conditionMessage(err)) + } + ) + catf("OK") + on.exit(unlink(tarball), add = TRUE) + + # now attempt to install + catf("- Installing renv ... ", appendLF = FALSE) + withCallingHandlers( + status <- renv_bootstrap_install(version, tarball, library), + error = function(err) { + catf("FAILED") + stop("failed to install:\n", conditionMessage(err)) + } + ) + catf("OK") + + # add empty line to break up bootstrapping from normal output + catf("") + + return(invisible()) + } + + renv_bootstrap_tests_running <- function() { + getOption("renv.tests.running", default = FALSE) + } + + renv_bootstrap_repos <- function() { + + # get CRAN repository + cran <- getOption("renv.repos.cran", "https://cloud.r-project.org") + + # check for repos override + repos <- Sys.getenv("RENV_CONFIG_REPOS_OVERRIDE", unset = NA) + if (!is.na(repos)) { + + # check for RSPM; if set, use a fallback repository for renv + rspm <- Sys.getenv("RSPM", unset = NA) + if (identical(rspm, repos)) + repos <- c(RSPM = rspm, CRAN = cran) + + return(repos) + + } + + # check for lockfile repositories + repos <- tryCatch(renv_bootstrap_repos_lockfile(), error = identity) + if (!inherits(repos, "error") && length(repos)) + return(repos) + + # retrieve current repos + repos <- getOption("repos") + + # ensure @CRAN@ entries are resolved + repos[repos == "@CRAN@"] <- cran + + # add in renv.bootstrap.repos if set + default <- c(FALLBACK = "https://cloud.r-project.org") + extra <- getOption("renv.bootstrap.repos", default = default) + repos <- c(repos, extra) + + # remove duplicates that might've snuck in + dupes <- duplicated(repos) | duplicated(names(repos)) + repos[!dupes] + + } + + renv_bootstrap_repos_lockfile <- function() { + + lockpath <- Sys.getenv("RENV_PATHS_LOCKFILE", unset = "renv.lock") + if (!file.exists(lockpath)) + return(NULL) + + lockfile <- tryCatch(renv_json_read(lockpath), error = identity) + if (inherits(lockfile, "error")) { + warning(lockfile) + return(NULL) + } + + repos <- lockfile$R$Repositories + if (length(repos) == 0) + return(NULL) + + keys <- vapply(repos, `[[`, "Name", FUN.VALUE = character(1)) + vals <- vapply(repos, `[[`, "URL", FUN.VALUE = character(1)) + names(vals) <- keys + + return(vals) + + } + + renv_bootstrap_download <- function(version) { + + sha <- attr(version, "sha", exact = TRUE) + + methods <- if (!is.null(sha)) { + + # attempting to bootstrap a development version of renv + c( + function() renv_bootstrap_download_tarball(sha), + function() renv_bootstrap_download_github(sha) + ) + + } else { + + # attempting to bootstrap a release version of renv + c( + function() renv_bootstrap_download_tarball(version), + function() renv_bootstrap_download_cran_latest(version), + function() renv_bootstrap_download_cran_archive(version) + ) + + } + + for (method in methods) { + path <- tryCatch(method(), error = identity) + if (is.character(path) && file.exists(path)) + return(path) + } + + stop("All download methods failed") + + } + + renv_bootstrap_download_impl <- function(url, destfile) { + + mode <- "wb" + + # https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17715 + fixup <- + Sys.info()[["sysname"]] == "Windows" && + substring(url, 1L, 5L) == "file:" + + if (fixup) + mode <- "w+b" + + args <- list( + url = url, + destfile = destfile, + mode = mode, + quiet = TRUE + ) + + if ("headers" %in% names(formals(utils::download.file))) + args$headers <- renv_bootstrap_download_custom_headers(url) + + do.call(utils::download.file, args) + + } + + renv_bootstrap_download_custom_headers <- function(url) { + + headers <- getOption("renv.download.headers") + if (is.null(headers)) + return(character()) + + if (!is.function(headers)) + stopf("'renv.download.headers' is not a function") + + headers <- headers(url) + if (length(headers) == 0L) + return(character()) + + if (is.list(headers)) + headers <- unlist(headers, recursive = FALSE, use.names = TRUE) + + ok <- + is.character(headers) && + is.character(names(headers)) && + all(nzchar(names(headers))) + + if (!ok) + stop("invocation of 'renv.download.headers' did not return a named character vector") + + headers + + } + + renv_bootstrap_download_cran_latest <- function(version) { + + spec <- renv_bootstrap_download_cran_latest_find(version) + type <- spec$type + repos <- spec$repos + + baseurl <- utils::contrib.url(repos = repos, type = type) + ext <- if (identical(type, "source")) + ".tar.gz" + else if (Sys.info()[["sysname"]] == "Windows") + ".zip" + else + ".tgz" + name <- sprintf("renv_%s%s", version, ext) + url <- paste(baseurl, name, sep = "/") + + destfile <- file.path(tempdir(), name) + status <- tryCatch( + renv_bootstrap_download_impl(url, destfile), + condition = identity + ) + + if (inherits(status, "condition")) + return(FALSE) + + # report success and return + destfile + + } + + renv_bootstrap_download_cran_latest_find <- function(version) { + + # check whether binaries are supported on this system + binary <- + getOption("renv.bootstrap.binary", default = TRUE) && + !identical(.Platform$pkgType, "source") && + !identical(getOption("pkgType"), "source") && + Sys.info()[["sysname"]] %in% c("Darwin", "Windows") + + types <- c(if (binary) "binary", "source") + + # iterate over types + repositories + for (type in types) { + for (repos in renv_bootstrap_repos()) { + + # retrieve package database + db <- tryCatch( + as.data.frame( + utils::available.packages(type = type, repos = repos), + stringsAsFactors = FALSE + ), + error = identity + ) + + if (inherits(db, "error")) + next + + # check for compatible entry + entry <- db[db$Package %in% "renv" & db$Version %in% version, ] + if (nrow(entry) == 0) + next + + # found it; return spec to caller + spec <- list(entry = entry, type = type, repos = repos) + return(spec) + + } + } + + # if we got here, we failed to find renv + fmt <- "renv %s is not available from your declared package repositories" + stop(sprintf(fmt, version)) + + } + + renv_bootstrap_download_cran_archive <- function(version) { + + name <- sprintf("renv_%s.tar.gz", version) + repos <- renv_bootstrap_repos() + urls <- file.path(repos, "src/contrib/Archive/renv", name) + destfile <- file.path(tempdir(), name) + + for (url in urls) { + + status <- tryCatch( + renv_bootstrap_download_impl(url, destfile), + condition = identity + ) + + if (identical(status, 0L)) + return(destfile) + + } + + return(FALSE) + + } + + renv_bootstrap_download_tarball <- function(version) { + + # if the user has provided the path to a tarball via + # an environment variable, then use it + tarball <- Sys.getenv("RENV_BOOTSTRAP_TARBALL", unset = NA) + if (is.na(tarball)) + return() + + # allow directories + if (dir.exists(tarball)) { + name <- sprintf("renv_%s.tar.gz", version) + tarball <- file.path(tarball, name) + } + + # bail if it doesn't exist + if (!file.exists(tarball)) { + + # let the user know we weren't able to honour their request + fmt <- "- RENV_BOOTSTRAP_TARBALL is set (%s) but does not exist." + msg <- sprintf(fmt, tarball) + warning(msg) + + # bail + return() + + } + + catf("- Using local tarball '%s'.", tarball) + tarball + + } + + renv_bootstrap_download_github <- function(version) { + + enabled <- Sys.getenv("RENV_BOOTSTRAP_FROM_GITHUB", unset = "TRUE") + if (!identical(enabled, "TRUE")) + return(FALSE) + + # prepare download options + pat <- Sys.getenv("GITHUB_PAT") + if (nzchar(Sys.which("curl")) && nzchar(pat)) { + fmt <- "--location --fail --header \"Authorization: token %s\"" + extra <- sprintf(fmt, pat) + saved <- options("download.file.method", "download.file.extra") + options(download.file.method = "curl", download.file.extra = extra) + on.exit(do.call(base::options, saved), add = TRUE) + } else if (nzchar(Sys.which("wget")) && nzchar(pat)) { + fmt <- "--header=\"Authorization: token %s\"" + extra <- sprintf(fmt, pat) + saved <- options("download.file.method", "download.file.extra") + options(download.file.method = "wget", download.file.extra = extra) + on.exit(do.call(base::options, saved), add = TRUE) + } + + url <- file.path("https://api.github.com/repos/rstudio/renv/tarball", version) + name <- sprintf("renv_%s.tar.gz", version) + destfile <- file.path(tempdir(), name) + + status <- tryCatch( + renv_bootstrap_download_impl(url, destfile), + condition = identity + ) + + if (!identical(status, 0L)) + return(FALSE) + + renv_bootstrap_download_augment(destfile) + + return(destfile) + + } + + # Add Sha to DESCRIPTION. This is stop gap until #890, after which we + # can use renv::install() to fully capture metadata. + renv_bootstrap_download_augment <- function(destfile) { + sha <- renv_bootstrap_git_extract_sha1_tar(destfile) + if (is.null(sha)) { + return() + } + + # Untar + tempdir <- tempfile("renv-github-") + on.exit(unlink(tempdir, recursive = TRUE), add = TRUE) + untar(destfile, exdir = tempdir) + pkgdir <- dir(tempdir, full.names = TRUE)[[1]] + + # Modify description + desc_path <- file.path(pkgdir, "DESCRIPTION") + desc_lines <- readLines(desc_path) + remotes_fields <- c( + "RemoteType: github", + "RemoteHost: api.github.com", + "RemoteRepo: renv", + "RemoteUsername: rstudio", + "RemotePkgRef: rstudio/renv", + paste("RemoteRef: ", sha), + paste("RemoteSha: ", sha) + ) + writeLines(c(desc_lines[desc_lines != ""], remotes_fields), con = desc_path) + + # Re-tar + local({ + old <- setwd(tempdir) + on.exit(setwd(old), add = TRUE) + + tar(destfile, compression = "gzip") + }) + invisible() + } + + # Extract the commit hash from a git archive. Git archives include the SHA1 + # hash as the comment field of the tarball pax extended header + # (see https://www.kernel.org/pub/software/scm/git/docs/git-archive.html) + # For GitHub archives this should be the first header after the default one + # (512 byte) header. + renv_bootstrap_git_extract_sha1_tar <- function(bundle) { + + # open the bundle for reading + # We use gzcon for everything because (from ?gzcon) + # > Reading from a connection which does not supply a 'gzip' magic + # > header is equivalent to reading from the original connection + conn <- gzcon(file(bundle, open = "rb", raw = TRUE)) + on.exit(close(conn)) + + # The default pax header is 512 bytes long and the first pax extended header + # with the comment should be 51 bytes long + # `52 comment=` (11 chars) + 40 byte SHA1 hash + len <- 0x200 + 0x33 + res <- rawToChar(readBin(conn, "raw", n = len)[0x201:len]) + + if (grepl("^52 comment=", res)) { + sub("52 comment=", "", res) + } else { + NULL + } + } + + renv_bootstrap_install <- function(version, tarball, library) { + + # attempt to install it into project library + dir.create(library, showWarnings = FALSE, recursive = TRUE) + output <- renv_bootstrap_install_impl(library, tarball) + + # check for successful install + status <- attr(output, "status") + if (is.null(status) || identical(status, 0L)) + return(status) + + # an error occurred; report it + header <- "installation of renv failed" + lines <- paste(rep.int("=", nchar(header)), collapse = "") + text <- paste(c(header, lines, output), collapse = "\n") + stop(text) + + } + + renv_bootstrap_install_impl <- function(library, tarball) { + + # invoke using system2 so we can capture and report output + bin <- R.home("bin") + exe <- if (Sys.info()[["sysname"]] == "Windows") "R.exe" else "R" + R <- file.path(bin, exe) + + args <- c( + "--vanilla", "CMD", "INSTALL", "--no-multiarch", + "-l", shQuote(path.expand(library)), + shQuote(path.expand(tarball)) + ) + + system2(R, args, stdout = TRUE, stderr = TRUE) + + } + + renv_bootstrap_platform_prefix <- function() { + + # construct version prefix + version <- paste(R.version$major, R.version$minor, sep = ".") + prefix <- paste("R", numeric_version(version)[1, 1:2], sep = "-") + + # include SVN revision for development versions of R + # (to avoid sharing platform-specific artefacts with released versions of R) + devel <- + identical(R.version[["status"]], "Under development (unstable)") || + identical(R.version[["nickname"]], "Unsuffered Consequences") + + if (devel) + prefix <- paste(prefix, R.version[["svn rev"]], sep = "-r") + + # build list of path components + components <- c(prefix, R.version$platform) + + # include prefix if provided by user + prefix <- renv_bootstrap_platform_prefix_impl() + if (!is.na(prefix) && nzchar(prefix)) + components <- c(prefix, components) + + # build prefix + paste(components, collapse = "/") + + } + + renv_bootstrap_platform_prefix_impl <- function() { + + # if an explicit prefix has been supplied, use it + prefix <- Sys.getenv("RENV_PATHS_PREFIX", unset = NA) + if (!is.na(prefix)) + return(prefix) + + # if the user has requested an automatic prefix, generate it + auto <- Sys.getenv("RENV_PATHS_PREFIX_AUTO", unset = NA) + if (auto %in% c("TRUE", "True", "true", "1")) + return(renv_bootstrap_platform_prefix_auto()) + + # empty string on failure + "" + + } + + renv_bootstrap_platform_prefix_auto <- function() { + + prefix <- tryCatch(renv_bootstrap_platform_os(), error = identity) + if (inherits(prefix, "error") || prefix %in% "unknown") { + + msg <- paste( + "failed to infer current operating system", + "please file a bug report at https://github.com/rstudio/renv/issues", + sep = "; " + ) + + warning(msg) + + } + + prefix + + } + + renv_bootstrap_platform_os <- function() { + + sysinfo <- Sys.info() + sysname <- sysinfo[["sysname"]] + + # handle Windows + macOS up front + if (sysname == "Windows") + return("windows") + else if (sysname == "Darwin") + return("macos") + + # check for os-release files + for (file in c("/etc/os-release", "/usr/lib/os-release")) + if (file.exists(file)) + return(renv_bootstrap_platform_os_via_os_release(file, sysinfo)) + + # check for redhat-release files + if (file.exists("/etc/redhat-release")) + return(renv_bootstrap_platform_os_via_redhat_release()) + + "unknown" + + } + + renv_bootstrap_platform_os_via_os_release <- function(file, sysinfo) { + + # read /etc/os-release + release <- utils::read.table( + file = file, + sep = "=", + quote = c("\"", "'"), + col.names = c("Key", "Value"), + comment.char = "#", + stringsAsFactors = FALSE + ) + + vars <- as.list(release$Value) + names(vars) <- release$Key + + # get os name + os <- tolower(sysinfo[["sysname"]]) + + # read id + id <- "unknown" + for (field in c("ID", "ID_LIKE")) { + if (field %in% names(vars) && nzchar(vars[[field]])) { + id <- vars[[field]] + break + } + } + + # read version + version <- "unknown" + for (field in c("UBUNTU_CODENAME", "VERSION_CODENAME", "VERSION_ID", "BUILD_ID")) { + if (field %in% names(vars) && nzchar(vars[[field]])) { + version <- vars[[field]] + break + } + } + + # join together + paste(c(os, id, version), collapse = "-") + + } + + renv_bootstrap_platform_os_via_redhat_release <- function() { + + # read /etc/redhat-release + contents <- readLines("/etc/redhat-release", warn = FALSE) + + # infer id + id <- if (grepl("centos", contents, ignore.case = TRUE)) + "centos" + else if (grepl("redhat", contents, ignore.case = TRUE)) + "redhat" + else + "unknown" + + # try to find a version component (very hacky) + version <- "unknown" + + parts <- strsplit(contents, "[[:space:]]")[[1L]] + for (part in parts) { + + nv <- tryCatch(numeric_version(part), error = identity) + if (inherits(nv, "error")) + next + + version <- nv[1, 1] + break + + } + + paste(c("linux", id, version), collapse = "-") + + } + + renv_bootstrap_library_root_name <- function(project) { + + # use project name as-is if requested + asis <- Sys.getenv("RENV_PATHS_LIBRARY_ROOT_ASIS", unset = "FALSE") + if (asis) + return(basename(project)) + + # otherwise, disambiguate based on project's path + id <- substring(renv_bootstrap_hash_text(project), 1L, 8L) + paste(basename(project), id, sep = "-") + + } + + renv_bootstrap_library_root <- function(project) { + + prefix <- renv_bootstrap_profile_prefix() + + path <- Sys.getenv("RENV_PATHS_LIBRARY", unset = NA) + if (!is.na(path)) + return(paste(c(path, prefix), collapse = "/")) + + path <- renv_bootstrap_library_root_impl(project) + if (!is.null(path)) { + name <- renv_bootstrap_library_root_name(project) + return(paste(c(path, prefix, name), collapse = "/")) + } + + renv_bootstrap_paths_renv("library", project = project) + + } + + renv_bootstrap_library_root_impl <- function(project) { + + root <- Sys.getenv("RENV_PATHS_LIBRARY_ROOT", unset = NA) + if (!is.na(root)) + return(root) + + type <- renv_bootstrap_project_type(project) + if (identical(type, "package")) { + userdir <- renv_bootstrap_user_dir() + return(file.path(userdir, "library")) + } + + } + + renv_bootstrap_validate_version <- function(version, description = NULL) { + + # resolve description file + # + # avoid passing lib.loc to `packageDescription()` below, since R will + # use the loaded version of the package by default anyhow. note that + # this function should only be called after 'renv' is loaded + # https://github.com/rstudio/renv/issues/1625 + description <- description %||% packageDescription("renv") + + # check whether requested version 'version' matches loaded version of renv + sha <- attr(version, "sha", exact = TRUE) + valid <- if (!is.null(sha)) + renv_bootstrap_validate_version_dev(sha, description) + else + renv_bootstrap_validate_version_release(version, description) + + if (valid) + return(TRUE) + + # the loaded version of renv doesn't match the requested version; + # give the user instructions on how to proceed + remote <- if (!is.null(description[["RemoteSha"]])) { + paste("rstudio/renv", description[["RemoteSha"]], sep = "@") + } else { + paste("renv", description[["Version"]], sep = "@") + } + + # display both loaded version + sha if available + friendly <- renv_bootstrap_version_friendly( + version = description[["Version"]], + sha = description[["RemoteSha"]] + ) + + fmt <- paste( + "renv %1$s was loaded from project library, but this project is configured to use renv %2$s.", + "- Use `renv::record(\"%3$s\")` to record renv %1$s in the lockfile.", + "- Use `renv::restore(packages = \"renv\")` to install renv %2$s into the project library.", + sep = "\n" + ) + catf(fmt, friendly, renv_bootstrap_version_friendly(version), remote) + + FALSE + + } + + renv_bootstrap_validate_version_dev <- function(version, description) { + expected <- description[["RemoteSha"]] + is.character(expected) && startswith(expected, version) + } + + renv_bootstrap_validate_version_release <- function(version, description) { + expected <- description[["Version"]] + is.character(expected) && identical(expected, version) + } + + renv_bootstrap_hash_text <- function(text) { + + hashfile <- tempfile("renv-hash-") + on.exit(unlink(hashfile), add = TRUE) + + writeLines(text, con = hashfile) + tools::md5sum(hashfile) + + } + + renv_bootstrap_load <- function(project, libpath, version) { + + # try to load renv from the project library + if (!requireNamespace("renv", lib.loc = libpath, quietly = TRUE)) + return(FALSE) + + # warn if the version of renv loaded does not match + renv_bootstrap_validate_version(version) + + # execute renv load hooks, if any + hooks <- getHook("renv::autoload") + for (hook in hooks) + if (is.function(hook)) + tryCatch(hook(), error = warnify) + + # load the project + renv::load(project) + + TRUE + + } + + renv_bootstrap_profile_load <- function(project) { + + # if RENV_PROFILE is already set, just use that + profile <- Sys.getenv("RENV_PROFILE", unset = NA) + if (!is.na(profile) && nzchar(profile)) + return(profile) + + # check for a profile file (nothing to do if it doesn't exist) + path <- renv_bootstrap_paths_renv("profile", profile = FALSE, project = project) + if (!file.exists(path)) + return(NULL) + + # read the profile, and set it if it exists + contents <- readLines(path, warn = FALSE) + if (length(contents) == 0L) + return(NULL) + + # set RENV_PROFILE + profile <- contents[[1L]] + if (!profile %in% c("", "default")) + Sys.setenv(RENV_PROFILE = profile) + + profile + + } + + renv_bootstrap_profile_prefix <- function() { + profile <- renv_bootstrap_profile_get() + if (!is.null(profile)) + return(file.path("profiles", profile, "renv")) + } + + renv_bootstrap_profile_get <- function() { + profile <- Sys.getenv("RENV_PROFILE", unset = "") + renv_bootstrap_profile_normalize(profile) + } + + renv_bootstrap_profile_set <- function(profile) { + profile <- renv_bootstrap_profile_normalize(profile) + if (is.null(profile)) + Sys.unsetenv("RENV_PROFILE") + else + Sys.setenv(RENV_PROFILE = profile) + } + + renv_bootstrap_profile_normalize <- function(profile) { + + if (is.null(profile) || profile %in% c("", "default")) + return(NULL) + + profile + + } + + renv_bootstrap_path_absolute <- function(path) { + + substr(path, 1L, 1L) %in% c("~", "/", "\\") || ( + substr(path, 1L, 1L) %in% c(letters, LETTERS) && + substr(path, 2L, 3L) %in% c(":/", ":\\") + ) + + } + + renv_bootstrap_paths_renv <- function(..., profile = TRUE, project = NULL) { + renv <- Sys.getenv("RENV_PATHS_RENV", unset = "renv") + root <- if (renv_bootstrap_path_absolute(renv)) NULL else project + prefix <- if (profile) renv_bootstrap_profile_prefix() + components <- c(root, renv, prefix, ...) + paste(components, collapse = "/") + } + + renv_bootstrap_project_type <- function(path) { + + descpath <- file.path(path, "DESCRIPTION") + if (!file.exists(descpath)) + return("unknown") + + desc <- tryCatch( + read.dcf(descpath, all = TRUE), + error = identity + ) + + if (inherits(desc, "error")) + return("unknown") + + type <- desc$Type + if (!is.null(type)) + return(tolower(type)) + + package <- desc$Package + if (!is.null(package)) + return("package") + + "unknown" + + } + + renv_bootstrap_user_dir <- function() { + dir <- renv_bootstrap_user_dir_impl() + path.expand(chartr("\\", "/", dir)) + } + + renv_bootstrap_user_dir_impl <- function() { + + # use local override if set + override <- getOption("renv.userdir.override") + if (!is.null(override)) + return(override) + + # use R_user_dir if available + tools <- asNamespace("tools") + if (is.function(tools$R_user_dir)) + return(tools$R_user_dir("renv", "cache")) + + # try using our own backfill for older versions of R + envvars <- c("R_USER_CACHE_DIR", "XDG_CACHE_HOME") + for (envvar in envvars) { + root <- Sys.getenv(envvar, unset = NA) + if (!is.na(root)) + return(file.path(root, "R/renv")) + } + + # use platform-specific default fallbacks + if (Sys.info()[["sysname"]] == "Windows") + file.path(Sys.getenv("LOCALAPPDATA"), "R/cache/R/renv") + else if (Sys.info()[["sysname"]] == "Darwin") + "~/Library/Caches/org.R-project.R/R/renv" + else + "~/.cache/R/renv" + + } + + renv_bootstrap_version_friendly <- function(version, shafmt = NULL, sha = NULL) { + sha <- sha %||% attr(version, "sha", exact = TRUE) + parts <- c(version, sprintf(shafmt %||% " [sha: %s]", substring(sha, 1L, 7L))) + paste(parts, collapse = "") + } + + renv_bootstrap_exec <- function(project, libpath, version) { + if (!renv_bootstrap_load(project, libpath, version)) + renv_bootstrap_run(version, libpath) + } + + renv_bootstrap_run <- function(version, libpath) { + + # perform bootstrap + bootstrap(version, libpath) + + # exit early if we're just testing bootstrap + if (!is.na(Sys.getenv("RENV_BOOTSTRAP_INSTALL_ONLY", unset = NA))) + return(TRUE) + + # try again to load + if (requireNamespace("renv", lib.loc = libpath, quietly = TRUE)) { + return(renv::load(project = getwd())) + } + + # failed to download or load renv; warn the user + msg <- c( + "Failed to find an renv installation: the project will not be loaded.", + "Use `renv::activate()` to re-initialize the project." + ) + + warning(paste(msg, collapse = "\n"), call. = FALSE) + + } + + renv_json_read <- function(file = NULL, text = NULL) { + + jlerr <- NULL + + # if jsonlite is loaded, use that instead + if ("jsonlite" %in% loadedNamespaces()) { + + json <- tryCatch(renv_json_read_jsonlite(file, text), error = identity) + if (!inherits(json, "error")) + return(json) + + jlerr <- json + + } + + # otherwise, fall back to the default JSON reader + json <- tryCatch(renv_json_read_default(file, text), error = identity) + if (!inherits(json, "error")) + return(json) + + # report an error + if (!is.null(jlerr)) + stop(jlerr) + else + stop(json) + + } + + renv_json_read_jsonlite <- function(file = NULL, text = NULL) { + text <- paste(text %||% readLines(file, warn = FALSE), collapse = "\n") + jsonlite::fromJSON(txt = text, simplifyVector = FALSE) + } + + renv_json_read_default <- function(file = NULL, text = NULL) { + + # find strings in the JSON + text <- paste(text %||% readLines(file, warn = FALSE), collapse = "\n") + pattern <- '["](?:(?:\\\\.)|(?:[^"\\\\]))*?["]' + locs <- gregexpr(pattern, text, perl = TRUE)[[1]] + + # if any are found, replace them with placeholders + replaced <- text + strings <- character() + replacements <- character() + + if (!identical(c(locs), -1L)) { + + # get the string values + starts <- locs + ends <- locs + attr(locs, "match.length") - 1L + strings <- substring(text, starts, ends) + + # only keep those requiring escaping + strings <- grep("[[\\]{}:]", strings, perl = TRUE, value = TRUE) + + # compute replacements + replacements <- sprintf('"\032%i\032"', seq_along(strings)) + + # replace the strings + mapply(function(string, replacement) { + replaced <<- sub(string, replacement, replaced, fixed = TRUE) + }, strings, replacements) + + } + + # transform the JSON into something the R parser understands + transformed <- replaced + transformed <- gsub("{}", "`names<-`(list(), character())", transformed, fixed = TRUE) + transformed <- gsub("[[{]", "list(", transformed, perl = TRUE) + transformed <- gsub("[]}]", ")", transformed, perl = TRUE) + transformed <- gsub(":", "=", transformed, fixed = TRUE) + text <- paste(transformed, collapse = "\n") + + # parse it + json <- parse(text = text, keep.source = FALSE, srcfile = NULL)[[1L]] + + # construct map between source strings, replaced strings + map <- as.character(parse(text = strings)) + names(map) <- as.character(parse(text = replacements)) + + # convert to list + map <- as.list(map) + + # remap strings in object + remapped <- renv_json_read_remap(json, map) + + # evaluate + eval(remapped, envir = baseenv()) + + } + + renv_json_read_remap <- function(json, map) { + + # fix names + if (!is.null(names(json))) { + lhs <- match(names(json), names(map), nomatch = 0L) + rhs <- match(names(map), names(json), nomatch = 0L) + names(json)[rhs] <- map[lhs] + } + + # fix values + if (is.character(json)) + return(map[[json]] %||% json) + + # handle true, false, null + if (is.name(json)) { + text <- as.character(json) + if (text == "true") + return(TRUE) + else if (text == "false") + return(FALSE) + else if (text == "null") + return(NULL) + } + + # recurse + if (is.recursive(json)) { + for (i in seq_along(json)) { + json[i] <- list(renv_json_read_remap(json[[i]], map)) + } + } + + json + + } + + # load the renv profile, if any + renv_bootstrap_profile_load(project) + + # construct path to library root + root <- renv_bootstrap_library_root(project) + + # construct library prefix for platform + prefix <- renv_bootstrap_platform_prefix() + + # construct full libpath + libpath <- file.path(root, prefix) + + # run bootstrap code + renv_bootstrap_exec(project, libpath, version) + + invisible() + +}) diff --git a/backend-R/renv/settings.json b/backend-R/renv/settings.json new file mode 100644 index 00000000..a1ae2284 --- /dev/null +++ b/backend-R/renv/settings.json @@ -0,0 +1,19 @@ +{ + "bioconductor.version": null, + "external.libraries": [], + "ignored.packages": [], + "package.dependency.fields": [ + "Imports", + "Depends", + "LinkingTo" + ], + "ppm.enabled": null, + "ppm.ignored.urls": [], + "r.version": null, + "snapshot.type": "all", + "use.cache": true, + "vcs.ignore.cellar": true, + "vcs.ignore.library": true, + "vcs.ignore.local": true, + "vcs.manage.ignores": true +} diff --git a/renv/.gitignore b/renv/.gitignore new file mode 100644 index 00000000..0ec0cbba --- /dev/null +++ b/renv/.gitignore @@ -0,0 +1,7 @@ +library/ +local/ +cellar/ +lock/ +python/ +sandbox/ +staging/ From 4ea79f2f4325e33d68a21932817067898d519666 Mon Sep 17 00:00:00 2001 From: Lennart Klein <31488915+kleinlennart@users.noreply.github.com> Date: Wed, 13 Mar 2024 15:41:54 +0000 Subject: [PATCH 50/72] add tidyverse support and add full RStudio Server customization --- .devcontainer/{ => R}/.Rprofile | 0 .devcontainer/R/addins.json | 3 + .devcontainer/R/r.snippets | 2 + .devcontainer/R/rstudio-prefs.json | 10 + .devcontainer/postCreateCommand.sh | 35 +- backend-R/.Rprofile | 11 +- backend-R/renv.lock | 2184 ++++++++++++++++++++++++++-- 7 files changed, 2111 insertions(+), 134 deletions(-) rename .devcontainer/{ => R}/.Rprofile (100%) create mode 100644 .devcontainer/R/addins.json create mode 100644 .devcontainer/R/r.snippets create mode 100644 .devcontainer/R/rstudio-prefs.json diff --git a/.devcontainer/.Rprofile b/.devcontainer/R/.Rprofile similarity index 100% rename from .devcontainer/.Rprofile rename to .devcontainer/R/.Rprofile diff --git a/.devcontainer/R/addins.json b/.devcontainer/R/addins.json new file mode 100644 index 00000000..fcdc8aa2 --- /dev/null +++ b/.devcontainer/R/addins.json @@ -0,0 +1,3 @@ +{ + "styler::style_active_file": "Shift+Cmd+F" +} \ No newline at end of file diff --git a/.devcontainer/R/r.snippets b/.devcontainer/R/r.snippets new file mode 100644 index 00000000..3067f3b2 --- /dev/null +++ b/.devcontainer/R/r.snippets @@ -0,0 +1,2 @@ +snippet tidy + library(tidyverse) diff --git a/.devcontainer/R/rstudio-prefs.json b/.devcontainer/R/rstudio-prefs.json new file mode 100644 index 00000000..4b1b550e --- /dev/null +++ b/.devcontainer/R/rstudio-prefs.json @@ -0,0 +1,10 @@ +{ + "always_save_history": false, + "save_workspace": "never", + "load_workspace": false, + "initial_working_directory": "/workspaces/media-impact-monitor/backend-R", + "restore_last_project": true, + "jobs_tab_visibility": "shown", + "rainbow_parentheses": true, + "auto_append_newline": true +} \ No newline at end of file diff --git a/.devcontainer/postCreateCommand.sh b/.devcontainer/postCreateCommand.sh index 01f248bd..c9e23eb1 100644 --- a/.devcontainer/postCreateCommand.sh +++ b/.devcontainer/postCreateCommand.sh @@ -5,17 +5,44 @@ # https://github.com/devcontainers/features/tree/main/src/node#using-nvm-from-postcreatecommand-or-another-lifecycle-command # . ${NVM_DIR}/nvm.sh && nvm install --lts -## R ---- +## R ------------------------------------ ## R system dependencies -sudo apt-get update && sudo apt-get install -y \ +sudo apt-get update +sudo apt-get install -y \ + cmake + +## tidyverse dependencies (from https://packagemanager.posit.co/client/#/repos/cran/packages/overview?search=tidyverse) +sudo apt-get install -y \ + libicu-dev \ + make \ + libcurl4-openssl-dev \ + libssl-dev \ + zlib1g-dev \ + libfontconfig1-dev \ + libfreetype6-dev \ libfribidi-dev \ libharfbuzz-dev \ - cmake + libjpeg-dev \ + libpng-dev \ + libtiff-dev \ + pandoc \ + libxml2-dev ## setup R env prefs -cp /workspaces/media-impact-monitor/.devcontainer/.Rprofile /home/vscode/.Rprofile +# ~ = /home/vscode/ for Codespaces +cp /workspaces/media-impact-monitor/.devcontainer/R/.Rprofile ~/.Rprofile +cp /workspaces/media-impact-monitor/.devcontainer/R/.Renviron ~/.Renviron + +# https://docs.rstudio.com/ide/server-pro/session-user-settings.html +cp /workspaces/media-impact-monitor/.devcontainer/R/rstudio-prefs.json ~/.config/rstudio/rstudio-prefs.json + +mkdir -p ~/.config/rstudio/keybindings +cp /workspaces/media-impact-monitor/.devcontainer/R/addins.json ~/.config/rstudio/keybindings/addins.json +mkdir -p ~/.config/rstudio/snippets +cp /workspaces/media-impact-monitor/.devcontainer/R/r.snippets ~/.config/rstudio/snippets/r.snippets +## Restore renv library from lockfile Rscript -e 'renv::restore(project = "/workspaces/media-impact-monitor/backend-R")' #### diff --git a/backend-R/.Rprofile b/backend-R/.Rprofile index 297746f6..00971986 100644 --- a/backend-R/.Rprofile +++ b/backend-R/.Rprofile @@ -1,10 +1,15 @@ # library(renv) +# ?renv::settings + renv::settings$snapshot.type("all") -# renv::config$ +options(renv.config.auto.snapshot = TRUE) -# custom cache location -# renv::paths$cache("/path/to/your/cache") +# ?renv::config +# renv::config$auto.snapshot() + +# custom cache location +# renv::paths$cache() source("renv/activate.R") diff --git a/backend-R/renv.lock b/backend-R/renv.lock index 14d576ef..f4704bc7 100644 --- a/backend-R/renv.lock +++ b/backend-R/renv.lock @@ -9,6 +9,103 @@ ] }, "Packages": { + "DBI": { + "Package": "DBI", + "Version": "1.2.2", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "methods" + ], + "Hash": "164809cd72e1d5160b4cb3aa57f510fe" + }, + "MASS": { + "Package": "MASS", + "Version": "7.3-60.0.1", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "grDevices", + "graphics", + "methods", + "stats", + "utils" + ], + "Hash": "b765b28387acc8ec9e9c1530713cb19c" + }, + "Matrix": { + "Package": "Matrix", + "Version": "1.6-5", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "grDevices", + "graphics", + "grid", + "lattice", + "methods", + "stats", + "utils" + ], + "Hash": "8c7115cd3a0e048bda2a7cd110549f7a" + }, + "R.cache": { + "Package": "R.cache", + "Version": "0.16.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "R.methodsS3", + "R.oo", + "R.utils", + "digest", + "utils" + ], + "Hash": "fe539ca3f8efb7410c3ae2cf5fe6c0f8" + }, + "R.methodsS3": { + "Package": "R.methodsS3", + "Version": "1.8.2", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "utils" + ], + "Hash": "278c286fd6e9e75d0c2e8f731ea445c8" + }, + "R.oo": { + "Package": "R.oo", + "Version": "1.26.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "R.methodsS3", + "methods", + "utils" + ], + "Hash": "4fed809e53ddb5407b3da3d0f572e591" + }, + "R.utils": { + "Package": "R.utils", + "Version": "2.12.3", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "R.methodsS3", + "R.oo", + "methods", + "tools", + "utils" + ], + "Hash": "3dc2829b790254bfba21e60965787651" + }, "R6": { "Package": "R6", "Version": "2.5.1", @@ -19,6 +116,27 @@ ], "Hash": "470851b6d5d0ac559e9d01bb352b4021" }, + "RColorBrewer": { + "Package": "RColorBrewer", + "Version": "1.1-3", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R" + ], + "Hash": "45f0398006e83a5b10b72a90663d8d8c" + }, + "Rcpp": { + "Package": "Rcpp", + "Version": "1.0.12", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "methods", + "utils" + ], + "Hash": "5ea2700d21e038ace58269ecdbeb9ec0" + }, "askpass": { "Package": "askpass", "Version": "1.2.0", @@ -29,6 +147,157 @@ ], "Hash": "cad6cf7f1d5f6e906700b9d3e718c796" }, + "backports": { + "Package": "backports", + "Version": "1.4.1", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R" + ], + "Hash": "c39fbec8a30d23e721980b8afb31984c" + }, + "base64enc": { + "Package": "base64enc", + "Version": "0.1-3", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R" + ], + "Hash": "543776ae6848fde2f48ff3816d0628bc" + }, + "bit": { + "Package": "bit", + "Version": "4.0.5", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R" + ], + "Hash": "d242abec29412ce988848d0294b208fd" + }, + "bit64": { + "Package": "bit64", + "Version": "4.0.5", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "bit", + "methods", + "stats", + "utils" + ], + "Hash": "9fe98599ca456d6552421db0d6772d8f" + }, + "blob": { + "Package": "blob", + "Version": "1.2.4", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "methods", + "rlang", + "vctrs" + ], + "Hash": "40415719b5a479b87949f3aa0aee737c" + }, + "brew": { + "Package": "brew", + "Version": "1.0-10", + "Source": "Repository", + "Repository": "CRAN", + "Hash": "8f4a384e19dccd8c65356dc096847b76" + }, + "brio": { + "Package": "brio", + "Version": "1.1.4", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R" + ], + "Hash": "68bd2b066e1fe780bbf62fc8bcc36de3" + }, + "broom": { + "Package": "broom", + "Version": "1.0.5", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "backports", + "dplyr", + "ellipsis", + "generics", + "glue", + "lifecycle", + "purrr", + "rlang", + "stringr", + "tibble", + "tidyr" + ], + "Hash": "fd25391c3c4f6ecf0fa95f1e6d15378c" + }, + "bslib": { + "Package": "bslib", + "Version": "0.6.1", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "base64enc", + "cachem", + "grDevices", + "htmltools", + "jquerylib", + "jsonlite", + "lifecycle", + "memoise", + "mime", + "rlang", + "sass" + ], + "Hash": "c0d8599494bc7fb408cd206bbdd9cab0" + }, + "cachem": { + "Package": "cachem", + "Version": "1.0.8", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "fastmap", + "rlang" + ], + "Hash": "c35768291560ce302c0a6589f92e837d" + }, + "callr": { + "Package": "callr", + "Version": "3.7.5", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "R6", + "processx", + "utils" + ], + "Hash": "9f0e4fae4963ba775a5e5c520838c87b" + }, + "cellranger": { + "Package": "cellranger", + "Version": "1.1.0", + 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"CRAN", + "Hash": "5d8225445acb167abf7797de48b2ee3c" + }, + "conflicted": { + "Package": "conflicted", + "Version": "1.2.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "cli", + "memoise", + "rlang" + ], + "Hash": "bb097fccb22d156624fd07cd2894ddb6" + }, + "cpp11": { + "Package": "cpp11", + "Version": "0.4.7", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R" + ], + "Hash": "5a295d7d963cc5035284dcdbaf334f4e" + }, "crayon": { "Package": "crayon", "Version": "1.5.2", @@ -86,6 +416,59 @@ ], "Hash": "411ca2c03b1ce5f548345d2fc2685f7a" }, + "cyclocomp": { + "Package": "cyclocomp", + "Version": "1.1.1", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "callr", + "crayon", + "desc", + "remotes", + "withr" + ], + "Hash": "cdc4a473222b0112d4df0bcfbed12d44" + }, + "data.table": { + "Package": "data.table", + "Version": "1.15.2", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "methods" + ], + "Hash": "536dfe4ac4093b5d115caed7a1a7223b" + }, + "dbplyr": { + "Package": "dbplyr", + "Version": "2.4.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "DBI", + "R", + "R6", + "blob", + "cli", + "dplyr", + "glue", + "lifecycle", + "magrittr", + "methods", + "pillar", + "purrr", + "rlang", + "tibble", + "tidyr", + "tidyselect", + "utils", + "vctrs", + "withr" + ], + "Hash": "59351f28a81f0742720b85363c4fdd61" + }, "desc": { "Package": "desc", "Version": "1.4.3", @@ -99,35 +482,291 @@ ], "Hash": "99b79fcbd6c4d1ce087f5c5c758b384f" }, - "fs": { - "Package": "fs", - "Version": "1.6.3", + "devtools": { + "Package": "devtools", + "Version": "2.4.5", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "R", - "methods" + "cli", + "desc", + "ellipsis", + "fs", + "lifecycle", + "memoise", + "miniUI", + "pkgbuild", + "pkgdown", + "pkgload", + "profvis", + "rcmdcheck", + "remotes", + "rlang", + "roxygen2", + "rversions", + "sessioninfo", + 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"Hash": "3a1be13d68d47a8cd0bfd74739ca1555" + "Hash": "409328b8e1253c8d729a7836fe7f7a16" }, "usethis": { "Package": "usethis", @@ -376,6 +2174,26 @@ ], "Hash": "d524fd42c517035027f866064417d7e6" }, + "utf8": { + "Package": "utf8", + "Version": "1.2.4", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R" + ], + "Hash": "62b65c52671e6665f803ff02954446e9" + }, + "uuid": { + "Package": "uuid", + "Version": "1.2-0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R" + ], + "Hash": "303c19bfd970bece872f93a824e323d9" + }, "vctrs": { "Package": "vctrs", "Version": "0.6.5", @@ -390,6 +2208,60 @@ ], "Hash": "c03fa420630029418f7e6da3667aac4a" }, + "viridisLite": { + "Package": "viridisLite", + "Version": "0.4.2", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R" + ], + "Hash": "c826c7c4241b6fc89ff55aaea3fa7491" + }, + "vroom": { + "Package": "vroom", + "Version": "1.6.5", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "bit64", + "cli", + "cpp11", + "crayon", + "glue", + "hms", + "lifecycle", + "methods", + "progress", + "rlang", + "stats", + "tibble", + "tidyselect", + "tzdb", + "vctrs", + "withr" + ], + "Hash": "390f9315bc0025be03012054103d227c" + }, + "waldo": { + "Package": "waldo", + "Version": "0.5.2", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "cli", + "diffobj", + "fansi", + "glue", + "methods", + "rematch2", + "rlang", + "tibble" + ], + "Hash": "c7d3fd6d29ab077cbac8f0e2751449e6" + }, "whisker": { "Package": "whisker", "Version": "0.4.1", @@ -409,6 +2281,64 @@ ], "Hash": "d31b6c62c10dcf11ec530ca6b0dd5d35" }, + "xfun": { + "Package": "xfun", + "Version": "0.42", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "grDevices", + "stats", + "tools" + ], + "Hash": "fd1349170df31f7a10bd98b0189e85af" + }, + "xml2": { + "Package": "xml2", + "Version": "1.3.6", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "cli", + "methods", + "rlang" + ], + "Hash": "1d0336142f4cd25d8d23cd3ba7a8fb61" + }, + "xmlparsedata": { + "Package": "xmlparsedata", + "Version": "1.0.5", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R" + ], + "Hash": "45e4bf3c46476896e821fc0a408fb4fc" + }, + "xopen": { + "Package": "xopen", + "Version": "1.0.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "processx" + ], + "Hash": "6c85f015dee9cc7710ddd20f86881f58" + }, + "xtable": { + "Package": "xtable", + "Version": "1.8-4", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "stats", + "utils" + ], + "Hash": "b8acdf8af494d9ec19ccb2481a9b11c2" + }, "yaml": { "Package": "yaml", "Version": "2.3.8", From 73d86b8961728df733e180983ba8c277cff26ad3 Mon Sep 17 00:00:00 2001 From: Lennart Klein <31488915+kleinlennart@users.noreply.github.com> Date: Wed, 13 Mar 2024 18:36:32 +0000 Subject: [PATCH 51/72] fix renv and .Renviron --- .devcontainer/R/.Renviron | 3 +++ .gitignore | 6 +----- backend-R/.Renviron | 1 + backend-R/renv.lock | 12 ------------ renv/.gitignore | 7 ------- 5 files changed, 5 insertions(+), 24 deletions(-) create mode 100644 .devcontainer/R/.Renviron create mode 100644 backend-R/.Renviron delete mode 100644 renv/.gitignore diff --git a/.devcontainer/R/.Renviron b/.devcontainer/R/.Renviron new file mode 100644 index 00000000..54c73317 --- /dev/null +++ b/.devcontainer/R/.Renviron @@ -0,0 +1,3 @@ +## Global .Renviron + +RENV_PATHS_CACHE="/renv/cache" \ No newline at end of file diff --git a/.gitignore b/.gitignore index 6f98794f..6606783e 100644 --- a/.gitignore +++ b/.gitignore @@ -7,7 +7,6 @@ # Icon must end with two \r Icon - # Thumbnails ._* @@ -33,7 +32,6 @@ Temporary Items # End of https://www.toptal.com/developers/gitignore/api/macos - ### Windows ------------------------------------------------------------------------ # Windows thumbnail cache files @@ -63,7 +61,6 @@ $RECYCLE.BIN/ # End of https://www.toptal.com/developers/gitignore/api/windows - ### Python ------------------------------------------------------------------------ # Byte-compiled / optimized / DLL files @@ -239,7 +236,6 @@ pyrightconfig.json # End of https://www.toptal.com/developers/gitignore/api/python - ### R ------------------------------------------------------------------------ # History files @@ -281,7 +277,7 @@ vignettes/*.pdf *.knit.md # R Environment Variables -.Renviron +# .Renviron # pkgdown site docs/ diff --git a/backend-R/.Renviron b/backend-R/.Renviron new file mode 100644 index 00000000..eed6a7fc --- /dev/null +++ b/backend-R/.Renviron @@ -0,0 +1 @@ +## Local .Renviron diff --git a/backend-R/renv.lock b/backend-R/renv.lock index f4704bc7..2da9e2c1 100644 --- a/backend-R/renv.lock +++ b/backend-R/renv.lock @@ -1294,18 +1294,6 @@ ], "Hash": "2a0dc8c6adfb6f032e4d4af82d258ab5" }, - "pak": { - "Package": "pak", - "Version": "0.7.1", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R", - "tools", - "utils" - ], - "Hash": "17c4c32b4bdc087508f35e8b7dcf4191" - }, "pillar": { "Package": "pillar", "Version": "1.9.0", diff --git a/renv/.gitignore b/renv/.gitignore deleted file mode 100644 index 0ec0cbba..00000000 --- a/renv/.gitignore +++ /dev/null @@ -1,7 +0,0 @@ -library/ -local/ -cellar/ -lock/ -python/ -sandbox/ -staging/ From 9f87e3e785c307b5f6997532a483683bedce9c38 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Thu, 14 Mar 2024 11:39:27 +0000 Subject: [PATCH 52/72] ci(deploy.yml): remove terraform from gh actions pipeline --- .github/workflows/deploy.yml | 97 ++++++++++-------------------------- 1 file changed, 26 insertions(+), 71 deletions(-) diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index 3647dfe9..f625a39c 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -8,39 +8,39 @@ on: - feature/deployment jobs: - # test: - # runs-on: ubuntu-22.04 - # steps: + test: + runs-on: ubuntu-22.04 + steps: - # - name: Checkout code - # uses: actions/checkout@v4 + - name: Checkout code + uses: actions/checkout@v4 - # - name: Set up Python - # uses: actions/setup-python@v2 - # with: - # python-version: '3.10' + - name: Set up Python + uses: actions/setup-python@v2 + with: + python-version: '3.10' - # - name: Install Poetry - # run: | - # pip install poetry + - name: Install Poetry + run: | + pip install poetry - # - name: Install dependencies - # run: | - # cd backend-python - # poetry install + - name: Install dependencies + run: | + cd backend-python + poetry install - # - name: Run pytest - # run: | - # cd backend-python - # poetry run pytest -k "not mediacloud and not proxied" # TODO: un-skip tests - # env: - # MEDIACLOUD_API_TOKEN: ${{ secrets.MEDIACLOUD_API_TOKEN }} - # ACLED_EMAIL: ${{ secrets.ACLED_EMAIL }} - # ACLED_KEY: ${{ secrets.ACLED_KEY }} - # ZENROWS_API_KEY: ${{ secrets.ZENROWS_API_KEY }} + - name: Run pytest + run: | + cd backend-python + poetry run pytest -k "not mediacloud and not proxied" # TODO: un-skip tests + env: + MEDIACLOUD_API_TOKEN: ${{ secrets.MEDIACLOUD_API_TOKEN }} + ACLED_EMAIL: ${{ secrets.ACLED_EMAIL }} + ACLED_KEY: ${{ secrets.ACLED_KEY }} + ZENROWS_API_KEY: ${{ secrets.ZENROWS_API_KEY }} build-and-push: - # needs: test + needs: test runs-on: ubuntu-22.04 steps: @@ -62,48 +62,3 @@ jobs: - name: Push Docker image run: docker push --all-tags socialchangelab/media-impact-monitor - - deploy: - # this pipeline does not work locally with act - # due to some issues with Azure CLI login - needs: build-and-push - runs-on: ubuntu-22.04 - steps: - - - name: Checkout code - uses: actions/checkout@v4 - - - name: Setup Azure CLI - uses: azure/login@v2 - with: - creds: ${{ secrets.AZURE_CREDENTIALS }} - - - name: Setup Terraform - uses: hashicorp/setup-terraform@v3 - with: - terraform_version: 1.7.4 - - - name: Terraform Init - run: terraform init - env: - ARM_CLIENT_ID: ${{ secrets.ARM_CLIENT_ID }} - ARM_CLIENT_SECRET: ${{ secrets.ARM_CLIENT_SECRET }} - ARM_SUBSCRIPTION_ID: ${{ secrets.ARM_SUBSCRIPTION_ID }} - ARM_TENANT_ID: ${{ secrets.ARM_TENANT_ID }} - - - name: Terraform Apply - run: terraform apply -auto-approve - env: - ARM_CLIENT_ID: ${{ secrets.ARM_CLIENT_ID }} - ARM_CLIENT_SECRET: ${{ secrets.ARM_CLIENT_SECRET }} - ARM_SUBSCRIPTION_ID: ${{ secrets.ARM_SUBSCRIPTION_ID }} - ARM_TENANT_ID: ${{ secrets.ARM_TENANT_ID }} - TF_VAR_ARM_CLIENT_ID: ${{ secrets.ARM_CLIENT_ID }} - TF_VAR_ARM_CLIENT_SECRET: ${{ secrets.ARM_CLIENT_SECRET }} - TF_VAR_ARM_SUBSCRIPTION_ID: ${{ secrets.ARM_SUBSCRIPTION_ID }} - TF_VAR_ARM_TENANT_ID: ${{ secrets.ARM_TENANT_ID }} - TF_VAR_DOCKER_IMAGE: socialchangelab/media-impact-monitor:${{ github.sha }} - TF_VAR_MEDIACLOUD_API_TOKEN: ${{ secrets.MEDIACLOUD_API_TOKEN }} - TF_VAR_ACLED_EMAIL: ${{ secrets.ACLED_EMAIL }} - TF_VAR_ACLED_KEY: ${{ secrets.ACLED_KEY }} - TF_VAR_ZENROWS_API_KEY: ${{ secrets.ZENROWS_API_KEY }} From 9c3a0b871b76d8e8c40300e68ecc4e186216ff17 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Thu, 14 Mar 2024 12:08:57 +0000 Subject: [PATCH 53/72] docs(mediacloud.py): comment and check about mediacloud bug --- .../data_loaders/news_online/mediacloud_.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_.py b/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_.py index d92326b7..4321dfb9 100644 --- a/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_.py +++ b/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_.py @@ -5,7 +5,6 @@ import mediacloud.api import pandas as pd from dotenv import load_dotenv -from media_impact_monitor.util.cache import cloudcache load_dotenv() @@ -19,13 +18,13 @@ Platform = Literal["onlinenews-mediacloud", "onlinenews-waybackmachine"] -@cloudcache def get_mediacloud_counts( query: str, start_date: pd.Timestamp = start, end_date: pd.Timestamp = end, countries: list | None = None, ): + assert len(countries) == 1, "Currently only supports one country at a time." collection_ids: list[str] = [] if countries: collection_ids = [] @@ -39,6 +38,7 @@ def get_mediacloud_counts( query=query, start_date=start_date.to_pydatetime().date(), end_date=end_date.to_pydatetime().date(), + # There seems to be a bug in the library relating to `collection_ids`: collection_ids=collection_ids, ) df = pd.DataFrame(data) From 2e1933f16d041a5d967e3e1248547f8180216283 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Thu, 14 Mar 2024 12:38:12 +0000 Subject: [PATCH 54/72] test(mediacloud_test.py, cache_test.py): disable tests directly in the test code --- .github/workflows/deploy.yml | 2 +- .../data_loaders/news_online/mediacloud_test.py | 2 ++ backend-python/media_impact_monitor/util/cache_test.py | 4 ++++ 3 files changed, 7 insertions(+), 1 deletion(-) diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index f625a39c..6af17474 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -32,7 +32,7 @@ jobs: - name: Run pytest run: | cd backend-python - poetry run pytest -k "not mediacloud and not proxied" # TODO: un-skip tests + poetry run pytest env: MEDIACLOUD_API_TOKEN: ${{ secrets.MEDIACLOUD_API_TOKEN }} ACLED_EMAIL: ${{ secrets.ACLED_EMAIL }} diff --git a/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_test.py b/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_test.py index 7ba04e41..ca295699 100644 --- a/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_test.py +++ b/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_test.py @@ -1,9 +1,11 @@ import pandas as pd +import pytest from media_impact_monitor.data_loaders.news_online.mediacloud_ import ( get_mediacloud_counts, ) +@pytest.mark.skip(reason="There are some bugs with the mediacloud library.") def test_get_counts_mediacloud(): df = get_mediacloud_counts( "Fridays for Future", diff --git a/backend-python/media_impact_monitor/util/cache_test.py b/backend-python/media_impact_monitor/util/cache_test.py index 9c8348ca..139094bc 100644 --- a/backend-python/media_impact_monitor/util/cache_test.py +++ b/backend-python/media_impact_monitor/util/cache_test.py @@ -1,3 +1,4 @@ +import pytest from media_impact_monitor.util.cache import get, get_proxied, post # URLs for the stable testing endpoints (preferably dedicated for testing purposes) @@ -30,6 +31,9 @@ def test_post_retrieval(): ), "The response body should contain the JSON data we sent" +@pytest.mark.skip( + reason="Our API key has expired, we will get a new one once we really need it." +) def test_get_proxied(): """ Test if the `get_proxied` function can successfully retrieve content. From d76bfb19680747c2e81b3c17b35cbd271df9c65a Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Thu, 14 Mar 2024 12:44:23 +0000 Subject: [PATCH 55/72] fix(backend-python): merge fixes from feature/deployment these were accidentally committed to the wrong branch --- .../media_impact_monitor/__init__.py | 4 ---- .../data_loaders/news_online/mediacloud_.py | 10 +++------ .../news_online/mediacloud_test.py | 8 +++++-- .../data_loaders/news_print/genios.py | 6 ++---- .../data_loaders/news_print/genios_test.py | 4 ++-- .../data_loaders/protest/acled.py | 13 +++++++----- .../data_loaders/protest/acled_test.py | 21 ++++++++++--------- .../media_impact_monitor/util/cache.py | 2 -- .../media_impact_monitor/util/cache_test.py | 6 +++++- 9 files changed, 37 insertions(+), 37 deletions(-) diff --git a/backend-python/media_impact_monitor/__init__.py b/backend-python/media_impact_monitor/__init__.py index a4f0d5c5..cc7ddfa7 100644 --- a/backend-python/media_impact_monitor/__init__.py +++ b/backend-python/media_impact_monitor/__init__.py @@ -1,5 +1 @@ """Main module for media_impact_monitor package.""" - -from beartype.claw import beartype_this_package - -beartype_this_package() diff --git a/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_.py b/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_.py index 2906f687..4321dfb9 100644 --- a/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_.py +++ b/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_.py @@ -5,9 +5,6 @@ import mediacloud.api import pandas as pd from dotenv import load_dotenv -from beartype import beartype - -from media_impact_monitor.util.cache import cloudcache, get load_dotenv() @@ -21,14 +18,13 @@ Platform = Literal["onlinenews-mediacloud", "onlinenews-waybackmachine"] -@cloudcache -@beartype -def get_counts( +def get_mediacloud_counts( query: str, start_date: pd.Timestamp = start, end_date: pd.Timestamp = end, countries: list | None = None, ): + assert len(countries) == 1, "Currently only supports one country at a time." collection_ids: list[str] = [] if countries: collection_ids = [] @@ -42,8 +38,8 @@ def get_counts( query=query, start_date=start_date.to_pydatetime().date(), end_date=end_date.to_pydatetime().date(), + # There seems to be a bug in the library relating to `collection_ids`: collection_ids=collection_ids, - platform="wayback", ) df = pd.DataFrame(data) df["date"] = pd.to_datetime(df["date"]) diff --git a/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_test.py b/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_test.py index 01b99ba4..ca295699 100644 --- a/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_test.py +++ b/backend-python/media_impact_monitor/data_loaders/news_online/mediacloud_test.py @@ -1,9 +1,13 @@ -from media_impact_monitor.data_loaders.news_online.mediacloud_ import get_counts import pandas as pd +import pytest +from media_impact_monitor.data_loaders.news_online.mediacloud_ import ( + get_mediacloud_counts, +) +@pytest.mark.skip(reason="There are some bugs with the mediacloud library.") def test_get_counts_mediacloud(): - df = get_counts( + df = get_mediacloud_counts( "Fridays for Future", pd.Timestamp("2023-06-01"), pd.Timestamp("2023-12-01"), diff --git a/backend-python/media_impact_monitor/data_loaders/news_print/genios.py b/backend-python/media_impact_monitor/data_loaders/news_print/genios.py index 051d981c..c14774ec 100644 --- a/backend-python/media_impact_monitor/data_loaders/news_print/genios.py +++ b/backend-python/media_impact_monitor/data_loaders/news_print/genios.py @@ -1,11 +1,9 @@ -from media_impact_monitor.util.cache import cloudcache, get import pandas as pd -from beartype import beartype +from media_impact_monitor.util.cache import cloudcache, get @cloudcache -@beartype -def get_counts(query: str, start_date: pd.Timestamp, end_date: pd.Timestamp): +def get_genios_counts(query: str, start_date: pd.Timestamp, end_date: pd.Timestamp): response = get( "https://www.genios.de/api/searchResult/Alle/Presse", params={ diff --git a/backend-python/media_impact_monitor/data_loaders/news_print/genios_test.py b/backend-python/media_impact_monitor/data_loaders/news_print/genios_test.py index 9206cb62..077a2f75 100644 --- a/backend-python/media_impact_monitor/data_loaders/news_print/genios_test.py +++ b/backend-python/media_impact_monitor/data_loaders/news_print/genios_test.py @@ -1,9 +1,9 @@ -from media_impact_monitor.data_loaders.news_print.genios import get_counts import pandas as pd +from media_impact_monitor.data_loaders.news_print.genios import get_genios_counts def test_get_counts_genios(): - df = get_counts( + df = get_genios_counts( "Fridays for Future", pd.Timestamp("2023-06-01"), pd.Timestamp("2023-12-01"), diff --git a/backend-python/media_impact_monitor/data_loaders/protest/acled.py b/backend-python/media_impact_monitor/data_loaders/protest/acled.py index deed9e2f..a953e22f 100644 --- a/backend-python/media_impact_monitor/data_loaders/protest/acled.py +++ b/backend-python/media_impact_monitor/data_loaders/protest/acled.py @@ -2,9 +2,7 @@ import pandas as pd from dotenv import load_dotenv - from media_impact_monitor.util.cache import cloudcache, get -from beartype import beartype load_dotenv() @@ -30,8 +28,7 @@ @cloudcache -@beartype -def get_events( +def get_acled_events( countries: list[str] = [], regions: list[str] = [], keyword: str | None = None ) -> pd.DataFrame: """Fetch protests from the ACLED API. @@ -67,5 +64,11 @@ def get_events( df["assoc_actor_1"].str.lower().str.contains(keyword.lower()) | df["notes"].str.lower().str.contains(keyword.lower()) ] - df = df.rename(columns={"event_date": "date"}) + df = df.rename( + columns={ + "event_date": "date", + "assoc_actor_1": "organization", + "notes": "description", + } + ) return df diff --git a/backend-python/media_impact_monitor/data_loaders/protest/acled_test.py b/backend-python/media_impact_monitor/data_loaders/protest/acled_test.py index e16b11b4..3665d4ac 100644 --- a/backend-python/media_impact_monitor/data_loaders/protest/acled_test.py +++ b/backend-python/media_impact_monitor/data_loaders/protest/acled_test.py @@ -1,6 +1,7 @@ import os + import pytest -from media_impact_monitor.data_loaders.protest.acled import get_events +from media_impact_monitor.data_loaders.protest.acled import get_acled_events def test_get_protests_with_keyword(): @@ -9,25 +10,25 @@ def test_get_protests_with_keyword(): assert ( "ACLED_EMAIL" in os.environ and "ACLED_KEY" in os.environ ), "Environment variables for ACLED API access are not set." - df = get_events(countries=test_countries, keyword=test_keyword) + df = get_acled_events(countries=test_countries, keyword=test_keyword) assert not df.empty, "The dataframe returned is unexpectedly empty." assert ( - df["notes"].str.lower().str.contains(test_keyword.lower()).all() - ), "Keyword not found in the notes." - expected_columns = ["date", "assoc_actor_1", "notes"] + df["description"].str.lower().str.contains(test_keyword.lower()).all() + ), "Keyword not found in the description." + expected_columns = ["date", "organization", "description"] assert all( column in df.columns for column in expected_columns ), "Not all expected columns are present in the returned DataFrame." movements = ["Fridays for Future", "Extinction Rebellion"] assert ( - df["assoc_actor_1"].str.contains(movements[0]).sum() > 10 - ), "Fridays for Future not found in the assoc_actor_1 column." + df["organization"].str.contains(movements[0]).sum() > 10 + ), "Fridays for Future not found in the organization column." assert ( - df["assoc_actor_1"].str.contains(movements[1]).sum() > 10 - ), "Extinction Rebellion not found in the assoc_actor_1 column." + df["organization"].str.contains(movements[1]).sum() > 10 + ), "Extinction Rebellion not found in the organization column." def test_get_protests_fail_with_both_countries_and_regions(): """Test that the function raises an assertion error when both countries and regions are specified.""" with pytest.raises(AssertionError): - get_events(countries=["United States"], regions=["Western Africa"]) + get_acled_events(countries=["United States"], regions=["Western Africa"]) diff --git a/backend-python/media_impact_monitor/util/cache.py b/backend-python/media_impact_monitor/util/cache.py index 833a822b..028c68ea 100644 --- a/backend-python/media_impact_monitor/util/cache.py +++ b/backend-python/media_impact_monitor/util/cache.py @@ -10,8 +10,6 @@ from requests import post as _post from zenrows import ZenRowsClient -from media_impact_monitor.util.paths import src, data - load_dotenv() storage = GoogleCloudStorage("/media-impact-monitor/cache") diff --git a/backend-python/media_impact_monitor/util/cache_test.py b/backend-python/media_impact_monitor/util/cache_test.py index f2a524a6..139094bc 100644 --- a/backend-python/media_impact_monitor/util/cache_test.py +++ b/backend-python/media_impact_monitor/util/cache_test.py @@ -1,4 +1,5 @@ -from media_impact_monitor.util.cache import get, post, get_proxied +import pytest +from media_impact_monitor.util.cache import get, get_proxied, post # URLs for the stable testing endpoints (preferably dedicated for testing purposes) GET_URL = "https://httpbin.org/get" @@ -30,6 +31,9 @@ def test_post_retrieval(): ), "The response body should contain the JSON data we sent" +@pytest.mark.skip( + reason="Our API key has expired, we will get a new one once we really need it." +) def test_get_proxied(): """ Test if the `get_proxied` function can successfully retrieve content. From c547feeda3fe2ab52e030edb6e3cf255a8b4639d Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Thu, 14 Mar 2024 12:48:30 +0000 Subject: [PATCH 56/72] docs(backend-python): add brief usage docs for Python backend --- backend-python/README.md | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/backend-python/README.md b/backend-python/README.md index 0519ecba..6f407796 100644 --- a/backend-python/README.md +++ b/backend-python/README.md @@ -1 +1,7 @@ - \ No newline at end of file +# Python backend + +## Usage + +- `poetry install` to install dependencies +- `poetry run python xyz.py` to run a Python script +- `poetry run pytest` to run tests From 05f14630381a4837694ab33adadff00c59915a00 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Thu, 14 Mar 2024 14:58:32 +0000 Subject: [PATCH 57/72] chore(api): closes 30 From 5b49657ff5d14360839ae44f1633c204c79fc037 Mon Sep 17 00:00:00 2001 From: Lucas Vogel Date: Thu, 14 Mar 2024 12:33:02 -0300 Subject: [PATCH 58/72] feat: Add all logos to the assets folder --- assets/logos/bmbf-hybrid.svg | 8 ++++++++ assets/logos/bmbf-negative.svg | 8 ++++++++ assets/logos/bmbf-positive.svg | 8 ++++++++ assets/logos/prototypefund-hybrid.svg | 17 +++++++++++++++ assets/logos/prototypefund-negative.svg | 17 +++++++++++++++ assets/logos/prototypefund-positive.svg | 17 +++++++++++++++ assets/logos/socialchangelab-hybrid.svg | 25 +++++++++++++++++++++++ assets/logos/socialchangelab-negative.svg | 25 +++++++++++++++++++++++ assets/logos/socialchangelab-positive.svg | 25 +++++++++++++++++++++++ 9 files changed, 150 insertions(+) create mode 100644 assets/logos/bmbf-hybrid.svg create mode 100644 assets/logos/bmbf-negative.svg create mode 100644 assets/logos/bmbf-positive.svg create mode 100644 assets/logos/prototypefund-hybrid.svg create mode 100644 assets/logos/prototypefund-negative.svg create mode 100644 assets/logos/prototypefund-positive.svg create mode 100644 assets/logos/socialchangelab-hybrid.svg create mode 100644 assets/logos/socialchangelab-negative.svg create mode 100644 assets/logos/socialchangelab-positive.svg diff --git a/assets/logos/bmbf-hybrid.svg b/assets/logos/bmbf-hybrid.svg new file mode 100644 index 00000000..287df864 --- /dev/null +++ b/assets/logos/bmbf-hybrid.svg @@ -0,0 +1,8 @@ + + + + + + + diff --git a/assets/logos/bmbf-negative.svg b/assets/logos/bmbf-negative.svg new file mode 100644 index 00000000..86369d9a --- /dev/null +++ b/assets/logos/bmbf-negative.svg @@ -0,0 +1,8 @@ + + + + + + + diff --git a/assets/logos/bmbf-positive.svg b/assets/logos/bmbf-positive.svg new file mode 100644 index 00000000..c7014083 --- /dev/null +++ b/assets/logos/bmbf-positive.svg @@ -0,0 +1,8 @@ + + + + + + + diff --git a/assets/logos/prototypefund-hybrid.svg b/assets/logos/prototypefund-hybrid.svg new file mode 100644 index 00000000..95723593 --- /dev/null +++ b/assets/logos/prototypefund-hybrid.svg @@ -0,0 +1,17 @@ + + + + + + + + + + + + + + + + diff --git a/assets/logos/prototypefund-negative.svg b/assets/logos/prototypefund-negative.svg new file mode 100644 index 00000000..cffb9e5d --- /dev/null +++ b/assets/logos/prototypefund-negative.svg @@ -0,0 +1,17 @@ + + + + + + + + + + + + + + + + diff --git a/assets/logos/prototypefund-positive.svg b/assets/logos/prototypefund-positive.svg new file mode 100644 index 00000000..83b9ccd2 --- /dev/null +++ b/assets/logos/prototypefund-positive.svg @@ -0,0 +1,17 @@ + + + + + + + + + + + + + + + + diff --git a/assets/logos/socialchangelab-hybrid.svg b/assets/logos/socialchangelab-hybrid.svg new file mode 100644 index 00000000..eee8fdd4 --- /dev/null +++ b/assets/logos/socialchangelab-hybrid.svg @@ -0,0 +1,25 @@ + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/logos/socialchangelab-negative.svg b/assets/logos/socialchangelab-negative.svg new file mode 100644 index 00000000..e7fa6e32 --- /dev/null +++ b/assets/logos/socialchangelab-negative.svg @@ -0,0 +1,25 @@ + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/logos/socialchangelab-positive.svg b/assets/logos/socialchangelab-positive.svg new file mode 100644 index 00000000..82ebff85 --- /dev/null +++ b/assets/logos/socialchangelab-positive.svg @@ -0,0 +1,25 @@ + + + + + + + + + + + + + + + + + + + + + + + + From bf106963b4d21e7abd0e0564680c9e2935ae9bd7 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Thu, 14 Mar 2024 20:42:57 +0000 Subject: [PATCH 59/72] ci(server): replace terraform with server setup script --- main.tf | 65 ------------------------------------------------- setup_server.sh | 35 ++++++++++++++++++++++++++ 2 files changed, 35 insertions(+), 65 deletions(-) delete mode 100644 main.tf create mode 100644 setup_server.sh diff --git a/main.tf b/main.tf deleted file mode 100644 index b8124771..00000000 --- a/main.tf +++ /dev/null @@ -1,65 +0,0 @@ -variable "ARM_SUBSCRIPTION_ID" {} -variable "ARM_CLIENT_ID" {} -variable "ARM_CLIENT_SECRET" {} -variable "ARM_TENANT_ID" {} - -variable "DOCKER_IMAGE" {} - -variable "MEDIACLOUD_API_TOKEN" {} -variable "ACLED_EMAIL" {} -variable "ACLED_KEY" {} -variable "ZENROWS_API_KEY" {} - -terraform { - backend "azurerm" { - resource_group_name = "rg-terraform" - storage_account_name = "terraformstatestoragedfx" - container_name = "tfstate" - key = "terraform.tfstate" - } -} - -provider "azurerm" { - subscription_id = var.ARM_SUBSCRIPTION_ID - client_id = var.ARM_CLIENT_ID - client_secret = var.ARM_CLIENT_SECRET - tenant_id = var.ARM_TENANT_ID - features {} -} - -resource "azurerm_resource_group" "rg" { - name = "rg-terraform" - location = "Germany West Central" -} - -resource "azurerm_container_group" "media_impact_monitor" { - name = "media-impact-monitor" - location = azurerm_resource_group.rg.location - resource_group_name = azurerm_resource_group.rg.name - os_type = "Linux" - - container { - name = "media-impact-monitor" - image = var.DOCKER_IMAGE - cpu = "0.5" - memory = "1.5" - - ports { - port = 80 - protocol = "TCP" - } - - environment_variables = { - MEDIACLOUD_API_TOKEN = var.MEDIACLOUD_API_TOKEN - ACLED_EMAIL = var.ACLED_EMAIL - ACLED_KEY = var.ACLED_KEY - ZENROWS_API_KEY = var.ZENROWS_API_KEY - } - } - - ip_address_type = "Public" -} - -output "media_impact_monitor_ip" { - value = azurerm_container_group.media_impact_monitor.ip_address -} diff --git a/setup_server.sh b/setup_server.sh new file mode 100644 index 00000000..5e48678a --- /dev/null +++ b/setup_server.sh @@ -0,0 +1,35 @@ +# run this on a fresh Ubuntu 22.04 server to set it up for serving the Docker image + +# setup nginx to serve the app from port 80 +sudo apt update +sudo apt install -y nginx certbot python3-certbot-nginx +sudo systemctl start nginx +NGINX_TEMPLATE=$(cat <<'EOF' +server { + listen 80; + server_name api.mediaimpactmonitor.app; + + location / { + proxy_pass http://localhost:8000; + proxy_http_version 1.1; + proxy_set_header Upgrade \$http_upgrade; + proxy_set_header Connection 'upgrade'; + proxy_set_header Host \$host; + proxy_cache_bypass \$http_upgrade; + } +} +EOF +) +echo "$NGINX_TEMPLATE" | sudo tee /etc/nginx/sites-available/default +sudo nginx -t && sudo systemctl reload nginx + +# setup SSL with certbot +# sudo certbot --nginx --non-interactive --agree-tos \ +# -d api.mediaimpactmonitor.app \ +# --email david@socialchangelab.org + +# install Docker +curl -fsSL https://get.docker.com -o get-docker.sh + +# pull the Docker image +sudo docker pull socialchangelab/media-impact-monitor:latest From 22e0b7c38191bb0e5a33397650bb87f6453b21df Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Thu, 14 Mar 2024 20:43:33 +0000 Subject: [PATCH 60/72] ci(deploy.yml): test deploy via ssh --- .github/workflows/deploy.yml | 115 +++++++++++++++++++++-------------- 1 file changed, 70 insertions(+), 45 deletions(-) diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index 6af17474..342e3676 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -1,5 +1,14 @@ name: CI/CD Pipeline -# run it locally: act --secret-file .secrets --env-file .env +# run it locally: +# act \ +# --secret DOCKER_USERNAME=$DOCKER_USERNAME \ +# --secret DOCKER_PASSWORD=$DOCKER_PASSWORD \ +# --secret SERVER_IP=$SERVER_IP \ +# --secret SERVER_USERNAME=$SERVER_USERNAME \ +# --secret SERVER_SSH_KEY="$SERVER_SSH_KEY" \ +# --env MEDIACLOUD_API_TOKEN=$MEDIACLOUD_API_TOKEN \ +# --env ACLED_EMAIL=$ACLED_EMAIL \ +# --env ACLED_KEY=$ACLED_KEY on: push: @@ -8,57 +17,73 @@ on: - feature/deployment jobs: - test: - runs-on: ubuntu-22.04 - steps: + # test: + # runs-on: ubuntu-22.04 + # steps: - - name: Checkout code - uses: actions/checkout@v4 + # - name: Checkout code + # uses: actions/checkout@v4 - - name: Set up Python - uses: actions/setup-python@v2 - with: - python-version: '3.10' + # - name: Set up Python + # uses: actions/setup-python@v2 + # with: + # python-version: '3.10' - - name: Install Poetry - run: | - pip install poetry + # - name: Install Poetry + # run: | + # pip install poetry - - name: Install dependencies - run: | - cd backend-python - poetry install + # - name: Install dependencies + # run: | + # cd backend-python + # poetry install - - name: Run pytest - run: | - cd backend-python - poetry run pytest - env: - MEDIACLOUD_API_TOKEN: ${{ secrets.MEDIACLOUD_API_TOKEN }} - ACLED_EMAIL: ${{ secrets.ACLED_EMAIL }} - ACLED_KEY: ${{ secrets.ACLED_KEY }} - ZENROWS_API_KEY: ${{ secrets.ZENROWS_API_KEY }} + # - name: Run pytest + # run: | + # cd backend-python + # poetry run pytest + # env: + # MEDIACLOUD_API_TOKEN: ${{ secrets.MEDIACLOUD_API_TOKEN }} + # ACLED_EMAIL: ${{ secrets.ACLED_EMAIL }} + # ACLED_KEY: ${{ secrets.ACLED_KEY }} + # ZENROWS_API_KEY: ${{ secrets.ZENROWS_API_KEY }} - build-and-push: - needs: test - runs-on: ubuntu-22.04 - steps: + # build-and-push: + # needs: test + # runs-on: ubuntu-22.04 + # steps: - - name: Checkout code - uses: actions/checkout@v4 + # - name: Checkout code + # uses: actions/checkout@v4 - - name: Login to Docker Registry - uses: docker/login-action@v3 - with: - username: ${{ secrets.DOCKER_USERNAME }} - password: ${{ secrets.DOCKER_PASSWORD }} + # - name: Login to Docker Registry + # uses: docker/login-action@v3 + # with: + # username: ${{ secrets.DOCKER_USERNAME }} + # password: ${{ secrets.DOCKER_PASSWORD }} + + # - name: Build Docker image + # run: | + # docker build \ + # -t socialchangelab/media-impact-monitor:${{ github.sha }} \ + # -t socialchangelab/media-impact-monitor:latest \ + # . - - name: Build Docker image - run: | - docker build \ - -t socialchangelab/media-impact-monitor:${{ github.sha }} \ - -t socialchangelab/media-impact-monitor:latest \ - . + # - name: Push Docker image + # run: docker push --all-tags socialchangelab/media-impact-monitor - - name: Push Docker image - run: docker push --all-tags socialchangelab/media-impact-monitor + deploy: + # needs: build-and-push + runs-on: ubuntu-22.04 + steps: + - name: Deploy to server + uses: appleboy/ssh-action@master + with: + host: ${{ secrets.SERVER_IP }} + username: ${{ secrets.SERVER_USERNAME }} + key: ${{ secrets.SERVER_SSH_KEY }} + script: | + sudo docker pull socialchangelab/media-impact-monitor:latest + sudo docker stop media-impact-monitor || true + sudo docker rm media-impact-monitor || true + sudo docker run -d -p 80:80 --name media-impact-monitor socialchangelab/media-impact-monitor:latest From 873bbcd4e6463aa2e36c1e4c28625a17ef580002 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Thu, 14 Mar 2024 20:54:38 +0000 Subject: [PATCH 61/72] ci(deploy.yml): test again --- .github/workflows/deploy.yml | 2 +- setup_server.sh | 3 +++ 2 files changed, 4 insertions(+), 1 deletion(-) diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index 342e3676..cba33bcb 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -86,4 +86,4 @@ jobs: sudo docker pull socialchangelab/media-impact-monitor:latest sudo docker stop media-impact-monitor || true sudo docker rm media-impact-monitor || true - sudo docker run -d -p 80:80 --name media-impact-monitor socialchangelab/media-impact-monitor:latest + sudo docker run -d -p 80:8000 --name media-impact-monitor socialchangelab/media-impact-monitor:latest diff --git a/setup_server.sh b/setup_server.sh index 5e48678a..1e3feaa6 100644 --- a/setup_server.sh +++ b/setup_server.sh @@ -33,3 +33,6 @@ curl -fsSL https://get.docker.com -o get-docker.sh # pull the Docker image sudo docker pull socialchangelab/media-impact-monitor:latest + +# run the Docker image +sudo docker run -d -p 80:8000 --name media-impact-monitor socialchangelab/media-impact-monitor:latest From 26044421ac862fb42b5188a409821e9c92a04322 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Thu, 14 Mar 2024 20:56:08 +0000 Subject: [PATCH 62/72] ci(deploy.yml): fix port order --- .github/workflows/deploy.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index cba33bcb..90ecfa00 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -86,4 +86,4 @@ jobs: sudo docker pull socialchangelab/media-impact-monitor:latest sudo docker stop media-impact-monitor || true sudo docker rm media-impact-monitor || true - sudo docker run -d -p 80:8000 --name media-impact-monitor socialchangelab/media-impact-monitor:latest + sudo docker run -d -p 8000:80 --name media-impact-monitor socialchangelab/media-impact-monitor:latest From 4e2bccaa6018c86b437f1fc646e8bb297f20a0b4 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Thu, 14 Mar 2024 20:57:13 +0000 Subject: [PATCH 63/72] refactor(server): change port to 8000 --- .github/workflows/deploy.yml | 2 +- Dockerfile | 2 +- setup_server.sh | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index 90ecfa00..534c7d30 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -86,4 +86,4 @@ jobs: sudo docker pull socialchangelab/media-impact-monitor:latest sudo docker stop media-impact-monitor || true sudo docker rm media-impact-monitor || true - sudo docker run -d -p 8000:80 --name media-impact-monitor socialchangelab/media-impact-monitor:latest + sudo docker run -d -p 8000:8000 --name media-impact-monitor socialchangelab/media-impact-monitor:latest diff --git a/Dockerfile b/Dockerfile index 7b8439bf..f71bf1c4 100644 --- a/Dockerfile +++ b/Dockerfile @@ -14,7 +14,7 @@ WORKDIR /app/ COPY . /app/ WORKDIR /app/backend-python # run the application -CMD ["uvicorn", "media_impact_monitor.api:app", "--host", "0.0.0.0", "--port", "80"] +CMD ["uvicorn", "media_impact_monitor.api:app", "--host", "0.0.0.0", "--port", "8000"] # OCI Labels as per https://github.com/opencontainers/image-spec/blob/main/annotations.md LABEL org.opencontainers.image.title="media-impact-monitor" LABEL org.opencontainers.image.description="Media Impact Monitor" diff --git a/setup_server.sh b/setup_server.sh index 1e3feaa6..eea3314c 100644 --- a/setup_server.sh +++ b/setup_server.sh @@ -35,4 +35,4 @@ curl -fsSL https://get.docker.com -o get-docker.sh sudo docker pull socialchangelab/media-impact-monitor:latest # run the Docker image -sudo docker run -d -p 80:8000 --name media-impact-monitor socialchangelab/media-impact-monitor:latest +sudo docker run -d -p 8000:8000 --name media-impact-monitor socialchangelab/media-impact-monitor:latest From 9b345ae2242c7ab61130c17d02941ff0617781d6 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Thu, 14 Mar 2024 20:58:33 +0000 Subject: [PATCH 64/72] ci(api): bump api version, enable all build steps --- .github/workflows/deploy.yml | 88 +++++++++++----------- backend-python/media_impact_monitor/api.py | 2 +- 2 files changed, 45 insertions(+), 45 deletions(-) diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index 534c7d30..e43df3f0 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -17,60 +17,60 @@ on: - feature/deployment jobs: - # test: - # runs-on: ubuntu-22.04 - # steps: + test: + runs-on: ubuntu-22.04 + steps: - # - name: Checkout code - # uses: actions/checkout@v4 + - name: Checkout code + uses: actions/checkout@v4 - # - name: Set up Python - # uses: actions/setup-python@v2 - # with: - # python-version: '3.10' + - name: Set up Python + uses: actions/setup-python@v2 + with: + python-version: '3.10' - # - name: Install Poetry - # run: | - # pip install poetry + - name: Install Poetry + run: | + pip install poetry - # - name: Install dependencies - # run: | - # cd backend-python - # poetry install + - name: Install dependencies + run: | + cd backend-python + poetry install - # - name: Run pytest - # run: | - # cd backend-python - # poetry run pytest - # env: - # MEDIACLOUD_API_TOKEN: ${{ secrets.MEDIACLOUD_API_TOKEN }} - # ACLED_EMAIL: ${{ secrets.ACLED_EMAIL }} - # ACLED_KEY: ${{ secrets.ACLED_KEY }} - # ZENROWS_API_KEY: ${{ secrets.ZENROWS_API_KEY }} + - name: Run pytest + run: | + cd backend-python + poetry run pytest + env: + MEDIACLOUD_API_TOKEN: ${{ secrets.MEDIACLOUD_API_TOKEN }} + ACLED_EMAIL: ${{ secrets.ACLED_EMAIL }} + ACLED_KEY: ${{ secrets.ACLED_KEY }} + ZENROWS_API_KEY: ${{ secrets.ZENROWS_API_KEY }} - # build-and-push: - # needs: test - # runs-on: ubuntu-22.04 - # steps: + build-and-push: + needs: test + runs-on: ubuntu-22.04 + steps: - # - name: Checkout code - # uses: actions/checkout@v4 + - name: Checkout code + uses: actions/checkout@v4 - # - name: Login to Docker Registry - # uses: docker/login-action@v3 - # with: - # username: ${{ secrets.DOCKER_USERNAME }} - # password: ${{ secrets.DOCKER_PASSWORD }} + - name: Login to Docker Registry + uses: docker/login-action@v3 + with: + username: ${{ secrets.DOCKER_USERNAME }} + password: ${{ secrets.DOCKER_PASSWORD }} - # - name: Build Docker image - # run: | - # docker build \ - # -t socialchangelab/media-impact-monitor:${{ github.sha }} \ - # -t socialchangelab/media-impact-monitor:latest \ - # . + - name: Build Docker image + run: | + docker build \ + -t socialchangelab/media-impact-monitor:${{ github.sha }} \ + -t socialchangelab/media-impact-monitor:latest \ + . - # - name: Push Docker image - # run: docker push --all-tags socialchangelab/media-impact-monitor + - name: Push Docker image + run: docker push --all-tags socialchangelab/media-impact-monitor deploy: # needs: build-and-push diff --git a/backend-python/media_impact_monitor/api.py b/backend-python/media_impact_monitor/api.py index c5452164..3e7b6491 100644 --- a/backend-python/media_impact_monitor/api.py +++ b/backend-python/media_impact_monitor/api.py @@ -23,7 +23,7 @@ @app.get("/", response_class=PlainTextResponse) def welcome() -> str: - version = "0.1.1" + version = "0.1.2" return f"Media Impact Monitor API, v{version}\nDocumentation: /docs" From 6837100ccf54b41ac25ce7bf711f682022c31239 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Thu, 14 Mar 2024 21:00:38 +0000 Subject: [PATCH 65/72] ci(deply.yml): uncomment dependency --- .github/workflows/deploy.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index e43df3f0..03281589 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -73,7 +73,7 @@ jobs: run: docker push --all-tags socialchangelab/media-impact-monitor deploy: - # needs: build-and-push + needs: build-and-push runs-on: ubuntu-22.04 steps: - name: Deploy to server From 70d296602672550a5a1de3eaa8ba091938b74c5e Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Thu, 14 Mar 2024 21:10:58 +0000 Subject: [PATCH 66/72] ci(deploy.yml): add env variables to Docker call --- .github/workflows/deploy.yml | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index 03281589..81594b8f 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -86,4 +86,10 @@ jobs: sudo docker pull socialchangelab/media-impact-monitor:latest sudo docker stop media-impact-monitor || true sudo docker rm media-impact-monitor || true - sudo docker run -d -p 8000:8000 --name media-impact-monitor socialchangelab/media-impact-monitor:latest + sudo docker run -d \ + -p 8000:8000 \ + -e MEDIACLOUD_API_TOKEN={{ secrets.MEDIACLOUD_API_TOKEN }} \ + -e ACLED_EMAIL={{ secrets.ACLED_EMAIL }} \ + -e ACLED_KEY={{ secrets.ACLED_KEY }} \ + --name media-impact-monitor \ + socialchangelab/media-impact-monitor:latest From 9052a183f431f219a1bb528ec7b3bca6f2bfe44f Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Thu, 14 Mar 2024 21:18:19 +0000 Subject: [PATCH 67/72] ci(deploy.yml): fix: add missing $ --- .github/workflows/deploy.yml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index 81594b8f..2c1ffbb5 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -88,8 +88,8 @@ jobs: sudo docker rm media-impact-monitor || true sudo docker run -d \ -p 8000:8000 \ - -e MEDIACLOUD_API_TOKEN={{ secrets.MEDIACLOUD_API_TOKEN }} \ - -e ACLED_EMAIL={{ secrets.ACLED_EMAIL }} \ - -e ACLED_KEY={{ secrets.ACLED_KEY }} \ + -e MEDIACLOUD_API_TOKEN=${{ secrets.MEDIACLOUD_API_TOKEN }} \ + -e ACLED_EMAIL=${{ secrets.ACLED_EMAIL }} \ + -e ACLED_KEY=${{ secrets.ACLED_KEY }} \ --name media-impact-monitor \ socialchangelab/media-impact-monitor:latest From 59ca55ff1eb6e9b38e1bd7687e07c3b5d2462b6e Mon Sep 17 00:00:00 2001 From: Lucas Vogel Date: Thu, 14 Mar 2024 20:15:25 -0300 Subject: [PATCH 68/72] docs: Add contributors and credits to README --- .all-contributorsrc | 55 +++++++++++++++++++++++++++++++++ README.md | 75 ++++++++++++++++++++++++++++++++++++++++++++- 2 files changed, 129 insertions(+), 1 deletion(-) create mode 100644 .all-contributorsrc diff --git a/.all-contributorsrc b/.all-contributorsrc new file mode 100644 index 00000000..80a70c27 --- /dev/null +++ b/.all-contributorsrc @@ -0,0 +1,55 @@ +{ + "projectName": "media-impact-monitor-website", + "projectOwner": "SocialChangeLab", + "repoType": "github", + "repoHost": "https://github.com", + "files": [ + "README.md" + ], + "imageSize": 64, + "commit": false, + "commitConvention": "angular", + "contributors": [ + { + "login": "vogelino", + "name": "Lucas Vogel", + "avatar_url": "https://avatars.githubusercontent.com/u/2759340?v=4", + "profile": "https://github.com/vogelino", + "contributions": [ + "code", + "design", + "doc", + "projectManagement" + ] + }, + { + "login": "davidpomerenke", + "name": "David Pomerenke", + "avatar_url": "https://avatars.githubusercontent.com/u/46022183?v=4", + "profile": "https://github.com/davidpomerenke", + "contributions": [ + "code", + "content", + "data", + "doc", + "projectManagement", + "research" + ] + }, + { + "login": "Lennartklein", + "name": "lennartklein", + "avatar_url": "https://avatars.githubusercontent.com/u/132817556?v=4", + "profile": "https://github.com/Lennartklein", + "contributions": [ + "code", + "data", + "doc", + "projectManagement", + "research" + ] + } + ], + "contributorsPerLine": 10, + "linkToUsage": true +} \ No newline at end of file diff --git a/README.md b/README.md index e1378a8a..096f18b9 100644 --- a/README.md +++ b/README.md @@ -1 +1,74 @@ -# Media Impact Monitor – Assets +[![Logo of the Media Impact Monitor app](https://mediaimpactmonitor.app/assets/logos/mim-alternate-hybrid.svg)](https://mediaimpactmonitor.app/) + +
+ +# Media Impact Monitor + + + +[![All Contributors](https://img.shields.io/badge/all_contributors-3-orange.svg?style=flat-square)](#contributors-) + + + +The _Media Impact Monitor_ is be a novel tool for protest groups and NGOs to measure and visualize their impact on public discourse. The tool will show how activist events affect the discourse across various media sources, such as local and national newspapers, social media, parliamentary debates, and more. Protest groups can use it to quantitatively and qualitatively evaluate their actions and adapt them in a targeted manner to draw attention to their issues. + +The _Media Impact Monitor_ project is hosted by [Social Change Lab](http://socialchangelab.org/) and funded by [Prototype Fund](https://prototypefund.de/en/) ([BMBF](https://www.bmbf.de/bmbf/de/home/home_node.html)). Development is primarily taking place from March–August 2024. + +## Motivation + +NGOs and protest groups often want to draw more public attention to important issues in order to initiate social change. To do this, they organise panel discussions, publish articles on social media, send out press releases, organize demonstrations, practice civil disobedience, implement art actions, and so on. To evaluate their work, organizations often use "press hits" as a metric - but this is a poor substitute for the broader impact on agenda setting within public discourse, which the organizations are interested in but cannot easily analyze. + +This impact on agenda setting is difficult to capture statistically because of the complex causal relationship between discourse, action events, and external events. A correlational and even a simple regression analysis would therefore lead to statistically biased results. + +This is where we will start with the Media Impact Monitor: It aims to use innovative causal inference methods to quantify and visualize how action events affect agenda setting in public discourse. + +**Examples:** The "Last Generation" can use it to see, for example, whether their actions distract from actual climate policy discussion or contribute to it constructively; and NGOs such as Greenpeace can evaluate which of their formats are most effective in media terms, and can use their media impact as an argument for donating to them. + +## Team + +The project team is constituted from: + +- **David Pomerenke** (@davidpomerenke) – Data Science – M.A. Artificial Intelligence +- **Lennard Klein** (@kleinlennart) – Data Science – B.A. Political Science +- **Lucas Vogel** (@vogelino) – Frontend UI/UX Development – B.A. Interface Design + +## Contact + +We are seeking activists and NGO employees to help us shape the tool: We are curious about your experience with media evaluation, your ideas and dreams, and your feedback on our prototypes! + +Please [send us an email](mailto:david@socialchangelab.org) or [book a short meeting](https://cal.com/davidpomerenke/meeting-mim) with us 🤗 + +## Contributors + + + + + + + + + + + + + + + + + +
Lucas Vogel
Lucas Vogel
💻 🎨 📖 📆		David Pomerenke
David Pomerenke
💻 🖋 🔣 📖 📆 🔬		lennartklein
lennartklein
💻 🔣 📖 📆 🔬
+ + Add your contributions + +
+ + + + + + +## Partners + +| Hosted by | Funded by | | +| ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | --------------------------------------------------------------------------------------------------------------------------------- | ----------------------------------------------------------------------------------------------------------------------------------------------------- | +| [![Logo of the Social Change Lab](https://mediaimpactmonitor.app/assets/logos/socialchangelab-hybrid.svg)](https://socialchangelab.org/)       | [![Logo of the Prototype Fund](https://mediaimpactmonitor.app/assets/logos/prototypefund-hybrid.svg)](https://prototypefund.org/) | [![Logo of the Bundesministerium für Bildung und Forschung](https://mediaimpactmonitor.app/assets/logos/bmbf-hybrid.svg)](https://prototypefund.org/) | From 37009c6a029d80e42fc6e79cb9fa1b18668c102b Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Fri, 15 Mar 2024 10:22:16 +0000 Subject: [PATCH 69/72] docs(README.md): minor content adjustment so that it matches the website --- README.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index 096f18b9..b7052302 100644 --- a/README.md +++ b/README.md @@ -10,19 +10,19 @@ -The _Media Impact Monitor_ is be a novel tool for protest groups and NGOs to measure and visualize their impact on public discourse. The tool will show how activist events affect the discourse across various media sources, such as local and national newspapers, social media, parliamentary debates, and more. Protest groups can use it to quantitatively and qualitatively evaluate their actions and adapt them in a targeted manner to draw attention to their issues. +The _Media Impact Monitor_ is a novel tool for protest groups and NGOs to measure and visualize their impact on public discourse. The tool shows how activist events affect the discourse across various media sources, such as local and national newspapers, social media, parliamentary debates, and more. Protest groups can use it to quantitatively and qualitatively evaluate their actions and adapt them in a targeted manner to draw attention to their issues. The _Media Impact Monitor_ project is hosted by [Social Change Lab](http://socialchangelab.org/) and funded by [Prototype Fund](https://prototypefund.de/en/) ([BMBF](https://www.bmbf.de/bmbf/de/home/home_node.html)). Development is primarily taking place from March–August 2024. -## Motivation +## Background NGOs and protest groups often want to draw more public attention to important issues in order to initiate social change. To do this, they organise panel discussions, publish articles on social media, send out press releases, organize demonstrations, practice civil disobedience, implement art actions, and so on. To evaluate their work, organizations often use "press hits" as a metric - but this is a poor substitute for the broader impact on agenda setting within public discourse, which the organizations are interested in but cannot easily analyze. This impact on agenda setting is difficult to capture statistically because of the complex causal relationship between discourse, action events, and external events. A correlational and even a simple regression analysis would therefore lead to statistically biased results. -This is where we will start with the Media Impact Monitor: It aims to use innovative causal inference methods to quantify and visualize how action events affect agenda setting in public discourse. +This is where the _Media Impact Monitor_ comes in: It uses innovative causal inference methods to quantify and visualize how action events affect agenda setting in public discourse. -**Examples:** The "Last Generation" can use it to see, for example, whether their actions distract from actual climate policy discussion or contribute to it constructively; and NGOs such as Greenpeace can evaluate which of their formats are most effective in media terms, and can use their media impact as an argument for donating to them. +**Examples:** Protest groups such as "Last Generation" can use it to see whether their actions distract from actual climate policy discussion or contribute to it constructively; and NGOs such as Greenpeace can evaluate which of their formats are most effective in media terms, and can use their media impact as an argument for donating to them. ## Team From 398f13ad3b298de76df2a9b05459abf622fa8665 Mon Sep 17 00:00:00 2001 From: David Pomerenke <46022183+davidpomerenke@users.noreply.github.com> Date: Fri, 15 Mar 2024 10:32:18 +0000 Subject: [PATCH 70/72] feat(setup_server.sh): uncomment SSL setup block --- setup_server.sh | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/setup_server.sh b/setup_server.sh index eea3314c..8f453dfd 100644 --- a/setup_server.sh +++ b/setup_server.sh @@ -24,9 +24,9 @@ echo "$NGINX_TEMPLATE" | sudo tee /etc/nginx/sites-available/default sudo nginx -t && sudo systemctl reload nginx # setup SSL with certbot -# sudo certbot --nginx --non-interactive --agree-tos \ -# -d api.mediaimpactmonitor.app \ -# --email david@socialchangelab.org +sudo certbot --nginx --non-interactive --agree-tos \ + -d api.mediaimpactmonitor.app \ + --email david@socialchangelab.org # install Docker curl -fsSL https://get.docker.com -o get-docker.sh From 3a6402852b7cbe3ccb6c145b72ff9dfa6b7793f1 Mon Sep 17 00:00:00 2001 From: Lucas Vogel Date: Fri, 15 Mar 2024 08:41:03 -0300 Subject: [PATCH 71/72] docs(README): Fix lennartklein into kleinlennart --- .all-contributorsrc | 8 ++++---- README.md | 4 +--- 2 files changed, 5 insertions(+), 7 deletions(-) diff --git a/.all-contributorsrc b/.all-contributorsrc index 80a70c27..b2872756 100644 --- a/.all-contributorsrc +++ b/.all-contributorsrc @@ -37,10 +37,10 @@ ] }, { - "login": "Lennartklein", - "name": "lennartklein", - "avatar_url": "https://avatars.githubusercontent.com/u/132817556?v=4", - "profile": "https://github.com/Lennartklein", + "login": "kleinlennart", + "name": "Lennart Klein", + "avatar_url": "https://avatars.githubusercontent.com/u/31488915?v=4", + "profile": "https://www.kleinbutsignificant.com/", "contributions": [ "code", "data", diff --git a/README.md b/README.md index 096f18b9..5e0f889f 100644 --- a/README.md +++ b/README.md @@ -5,9 +5,7 @@ # Media Impact Monitor - [![All Contributors](https://img.shields.io/badge/all_contributors-3-orange.svg?style=flat-square)](#contributors-) - The _Media Impact Monitor_ is be a novel tool for protest groups and NGOs to measure and visualize their impact on public discourse. The tool will show how activist events affect the discourse across various media sources, such as local and national newspapers, social media, parliamentary debates, and more. Protest groups can use it to quantitatively and qualitatively evaluate their actions and adapt them in a targeted manner to draw attention to their issues. @@ -48,7 +46,7 @@ Please [send us an email](mailto:david@socialchangelab.org) or [book a short mee Lucas Vogel
Lucas Vogel
💻 🎨 📖 📆 David Pomerenke
David Pomerenke
💻 🖋 🔣 📖 📆 🔬 - lennartklein
lennartklein
💻 🔣 📖 📆 🔬 + Lennart Klein
Lennart Klein
💻 🔣 📖 📆 🔬 From 3ecd2c6c336b6b6286e1746cd7d1cc6ab00f303e Mon Sep 17 00:00:00 2001 From: Lucas Vogel Date: Fri, 15 Mar 2024 09:00:40 -0300 Subject: [PATCH 72/72] docs(README): Add OKFN logo to README --- README.md | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index 250f3551..671de0fe 100644 --- a/README.md +++ b/README.md @@ -5,7 +5,9 @@ # Media Impact Monitor + [![All Contributors](https://img.shields.io/badge/all_contributors-3-orange.svg?style=flat-square)](#contributors-) + The _Media Impact Monitor_ is a novel tool for protest groups and NGOs to measure and visualize their impact on public discourse. The tool shows how activist events affect the discourse across various media sources, such as local and national newspapers, social media, parliamentary debates, and more. Protest groups can use it to quantitatively and qualitatively evaluate their actions and adapt them in a targeted manner to draw attention to their issues. @@ -67,6 +69,6 @@ Please [send us an email](mailto:david@socialchangelab.org) or [book a short mee ## Partners -| Hosted by | Funded by | | -| ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | --------------------------------------------------------------------------------------------------------------------------------- | ----------------------------------------------------------------------------------------------------------------------------------------------------- | -| [![Logo of the Social Change Lab](https://mediaimpactmonitor.app/assets/logos/socialchangelab-hybrid.svg)](https://socialchangelab.org/)       | [![Logo of the Prototype Fund](https://mediaimpactmonitor.app/assets/logos/prototypefund-hybrid.svg)](https://prototypefund.org/) | [![Logo of the Bundesministerium für Bildung und Forschung](https://mediaimpactmonitor.app/assets/logos/bmbf-hybrid.svg)](https://prototypefund.org/) | +| Hosted by | Funded by | | | +| ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | --------------------------------------------------------------------------------------------------------------------------------- | ----------------------------------------------------------------------------------------------------------------------------------------------------- | ------------------------------------------------------------------------------------------------------------------------- | +| [![Logo of the Social Change Lab](https://mediaimpactmonitor.app/assets/logos/socialchangelab-hybrid.svg)](https://socialchangelab.org/)       | [![Logo of the Prototype Fund](https://mediaimpactmonitor.app/assets/logos/prototypefund-hybrid.svg)](https://prototypefund.org/) | [![Logo of the Bundesministerium für Bildung und Forschung](https://mediaimpactmonitor.app/assets/logos/bmbf-hybrid.svg)](https://prototypefund.org/) | [![Logo of the Open Knowledge Founfation](https://mediaimpactmonitor.app/assets/logos/okf-hybrid.svg)](https://okfn.org/) |