AVR128DB64 Port configuration

[concon]

I want to use the following configuration using avr128db64 in my project, but I am very confused about PWM. I have been reading dxcore's PWM configuration for days, but I don't understand anything. Can you help me with this, your help will be greatly appreciated.

PA0 __ DI // OUTPUT
PA1 __ RO // INPUT
PA2 __ SLAVE_LED_6 // OUTPUT (PWM)
PA3 __ Re/De // OUTPUT (PWM)
PA4 __ MASTER_LED_6 // OUTPUT (PWM)
PA5 __ SLAVE_LED_5 // OUTPUT (PWM)
PA6 __ MASTER_LED_5 // OUTPUT (PWM)
PA7 __ SLAVE_LED_4 // OUTPUT (PWM)
PB0 __ MASTER_LED_4 // OUTPUT (PWM)
PB1 __ ON_OFF_BUTTON_12 // INPUT (PULLUP)
PB2 __ ON_OFF_BUTTON_11 // INPUT (PULLUP)
PB3 __ ON_OFF_BUTTON_10 // INPUT (PULLUP)
PB4 __ ON_OFF_BUTTON_9 // INPUT (PULLUP)
PB5 __ ON_OFF_BUTTON_8 // INPUT (PULLUP)
PB6 __ ON_OFF_BUTTON_7 // INPUT (PULLUP)
PB7 __ MASTER_6 // OUTPUT (PWM)
PC0 __ ALARM // OUTPUT
PC1 __ BUZZER_1 // OUTPUT
PC2 __ MASTER_1 // OUTPUT (PWM)
PC3 __ FUTURE // OUTPUT
PC4 __ SLAVE_1 // OUTPUT (PWM)
PC5 __ MASTER_2 // OUTPUT (PWM)
PC6 __ SLAVE_2 // OUTPUT (PWM)
PC7 __ MASTER_3 // OUTPUT (PWM)
PD0 __ MASTER_ADC_1 // ADC
PD1 __ SLAVE_ADC_1 // ADC
PD2 __ MASTER_ADC_2 // ADC
PD3 __ SLAVE_ADC_2 // ADC
PD4 __ MASTER_ADC_3 // ADC
PD5 __ SLAVE_ADC_3 // ADC
PD6 __ MASTER_ADC_4 // ADC
PD7 __ SLAVE_ADC_4 // ADC
PE0 __ MASTER_ADC_5 // ADC
PE1 __ SLAVE_ADC_5 // ADC
PE2 __ MASTER_ADC_6 // ADC
PE3 __ SLAVE_ADC_6 // ADC
PE4 __ MASTER_LED_1 // OUTPUT (PWM)
PE5 __ SLAVE_LED_1 // OUTPUT (PWM)
PE6 __ ON_OFF_BUTTON_6 // INPUT (PULLUP)
PE7 __ ON_OFF_BUTTON_5 // INPUT (PULLUP)
PF0 __ ON_OFF_BUTTON_4 // INPUT (PULLUP)
PF1 __ ON_OFF_BUTTON_3 // INPUT (PULLUP)
PF2 __ ON_OFF_BUTTON_2 // INPUT (PULLUP)
PF3 __ ON_OFF_BUTTON_1 // INPUT (PULLUP)
PF4 __ MASTER_5 // OUTPUT (PWM)
PF5 __ SLAVE_5 // OUTPUT (PWM)
PF6 __ BUZZER_OFF_TEST // INPUT (PULLUP)
PF7 __ UPDI.
PG0 __ SLAVE_6 // OUTPUT (PWM)
PG1 __ MASTER_4 // OUTPUT (PWM)
PG2 __ SLAVE_LED_3 // OUTPUT (PWM)
PG3 __ MASTER_LED_2 // OUTPUT (PWM)
PG4 __ SLAVE_LED_2 // OUTPUT (PWM)
PG5 __ MASTER_LED_3 // OUTPUT (PWM)
PG6 __ SLAVE_3 // OUTPUT (PWM)
PG7 __ SLAVE_4 // OUTPUT (PWM)