Error in if (any(meta_cell[, var_per_cell, drop = FALSE] <= 0)) { : missing value where TRUE/FALSE needed

[maggiebr0wn]

Hello,

Thank you for making a tool which tackles the common statistical issues in DEG detection for single cell!

In trying IDEAS, I'm encountering the following error and am unsure how to proceed overcoming it:

Error in if (any(meta_cell[, var_per_cell, drop = FALSE] <= 0)) { :
missing value where TRUE/FALSE needed
In addition: Warning message:
In Ops.factor(left, right) : ‘<=’ not meaningful for factors

Thanks in advance

[liusi2019]

Hi Maggiebr0wn,

Sorry that I didn't notice this message earlier and sorry for the long overdue. The values in in meta_cell under the column names inside var_per_cell are expected to be numerical values instead of factors. Could you check whether any of these columns have factor format in your data?